SRR2431390_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2431390_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3296883
Sequences flagged as poor quality	0
Sequence length	100
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	30411	0.9224167190646438	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	24451	0.7416399065420277	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15826	0.4800291669434432	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8662	0.2627330117568625	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	6970	0.21141180927560974	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5316	0.1612432106325884	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5203	0.15781573079784753	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4716	0.143044202660513	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	10060	64.17557	1
GTATCAA	20350	45.24238	1
TATAACG	325	43.403214	2
GTGGTAT	3265	37.300426	1
ATCAACG	26375	34.709175	3
TCAACGC	26620	34.3544	4
TATCAAC	26750	34.27637	2
TGGTATC	3415	33.871033	2
ATAACGC	480	33.30493	3
CAACGCA	27475	33.233982	5
AACGCAG	28395	32.258915	6
TACCTGG	2745	32.031944	2
CGCAGAG	32005	28.473429	8
ACGCAGA	32090	28.441946	7
CATGGGT	9560	27.984995	4
GTACCTG	3190	27.41697	1
GTACATG	19260	27.392632	1
TACATGG	19045	27.059116	2
ACATGGG	19100	26.709589	3
GCAGAGT	34385	26.31125	9