Basic Statistics
Measure | Value |
---|---|
Filename | SRR2431385_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3850968 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 42796 | 1.111305001755403 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 33755 | 0.8765328613481078 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 23752 | 0.6167799888235893 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9944 | 0.2582207902013208 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6831 | 0.17738397202988962 | No Hit |
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6437 | 0.1671527782105694 | No Hit |
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6289 | 0.16330958865407347 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 6146 | 0.15959623658259428 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 13185 | 0.0 | 66.11649 | 1 |
GTATCAA | 27220 | 0.0 | 46.311504 | 1 |
ATCAACG | 36030 | 0.0 | 34.736828 | 3 |
GTGGTAT | 4095 | 0.0 | 34.33187 | 1 |
TCAACGC | 36535 | 0.0 | 34.230503 | 4 |
TATCAAC | 36850 | 0.0 | 33.977932 | 2 |
CAACGCA | 37670 | 0.0 | 33.211613 | 5 |
TATAACG | 340 | 0.0 | 33.18911 | 2 |
TGGTATC | 4130 | 0.0 | 33.01499 | 2 |
AACGCAG | 39025 | 0.0 | 32.178864 | 6 |
ACGCAGA | 43650 | 0.0 | 28.715471 | 7 |
CGCAGAG | 43465 | 0.0 | 28.664686 | 8 |
GCAGAGT | 46040 | 0.0 | 26.887943 | 9 |
CATGGGT | 10990 | 0.0 | 26.609299 | 4 |
GTACATG | 25525 | 0.0 | 26.323687 | 1 |
TACATGG | 24870 | 0.0 | 26.240793 | 2 |
ACATGGG | 24840 | 0.0 | 25.325083 | 3 |
TACCTGG | 2305 | 0.0 | 24.68185 | 2 |
GAGTACT | 32690 | 0.0 | 22.700968 | 12-13 |
ATGGGTG | 6090 | 0.0 | 22.69712 | 5 |