Basic Statistics
Measure | Value |
---|---|
Filename | SRR2431374_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3290898 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 49500 | 1.5041487156393178 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATAACG | 350 | 0.0 | 38.94269 | 2 |
GGTATCA | 4070 | 0.0 | 37.761513 | 1 |
GTATCAA | 7435 | 0.0 | 36.348198 | 1 |
TACCTGG | 3315 | 0.0 | 35.870136 | 2 |
GTACCTG | 3490 | 0.0 | 34.4755 | 1 |
ATAACGC | 375 | 0.0 | 33.83986 | 3 |
TCAACGC | 8095 | 0.0 | 31.294495 | 4 |
ATCAACG | 8185 | 0.0 | 31.065233 | 3 |
CAACGCA | 8425 | 0.0 | 30.124502 | 5 |
AACGCAG | 8840 | 0.0 | 28.763453 | 6 |
TATCAAC | 9260 | 0.0 | 28.321697 | 2 |
ACCTGGG | 4000 | 0.0 | 28.19988 | 3 |
GTCTCGC | 730 | 0.0 | 26.39715 | 1 |
TAACGCA | 550 | 0.0 | 25.636255 | 4 |
CGCAGAG | 9785 | 0.0 | 25.601322 | 8 |
ACGCAGA | 9950 | 0.0 | 25.318485 | 7 |
GTACATG | 11965 | 0.0 | 25.179167 | 1 |
TACATGG | 11535 | 0.0 | 24.28425 | 2 |
TCTGTCG | 715 | 0.0 | 22.349556 | 8 |
ACATGGG | 12285 | 0.0 | 21.806992 | 3 |