FastQCFastQC Report
Wed 25 May 2016
SRR2431368_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2431368_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3204563
Sequences flagged as poor quality0
Sequence length100
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA387811.2101806080891528No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA41850.051.7731441
GTATCAA83550.043.990551
TCAACGC99450.035.5862734
ATCAACG99450.035.5390133
CAACGCA108450.032.7197275
AACGCAG113250.031.2914336
ACGCAGA127000.027.644537
TATCAAC132500.027.63212
CGCAGAG126700.027.4132238
GTACATG198850.024.9123151
TACATGG186750.024.361672
GCAGAGT139350.024.1152299
CGCAGAA4150.022.6503122
ACATGGG193250.022.4721583
CATGGGT29850.020.468754
AATCCGC7250.020.0962966
GTGGTAT21650.019.3210721
CAGAGTA135650.019.3160110-11
TGGTATC20500.019.0290262
AGAGTAC130900.018.93978710-11