Basic Statistics
Measure | Value |
---|---|
Filename | SRR2431368_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3204563 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 38781 | 1.2101806080891528 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4185 | 0.0 | 51.773144 | 1 |
GTATCAA | 8355 | 0.0 | 43.99055 | 1 |
TCAACGC | 9945 | 0.0 | 35.586273 | 4 |
ATCAACG | 9945 | 0.0 | 35.539013 | 3 |
CAACGCA | 10845 | 0.0 | 32.719727 | 5 |
AACGCAG | 11325 | 0.0 | 31.291433 | 6 |
ACGCAGA | 12700 | 0.0 | 27.64453 | 7 |
TATCAAC | 13250 | 0.0 | 27.6321 | 2 |
CGCAGAG | 12670 | 0.0 | 27.413223 | 8 |
GTACATG | 19885 | 0.0 | 24.912315 | 1 |
TACATGG | 18675 | 0.0 | 24.36167 | 2 |
GCAGAGT | 13935 | 0.0 | 24.115229 | 9 |
CGCAGAA | 415 | 0.0 | 22.650312 | 2 |
ACATGGG | 19325 | 0.0 | 22.472158 | 3 |
CATGGGT | 2985 | 0.0 | 20.46875 | 4 |
AATCCGC | 725 | 0.0 | 20.096296 | 6 |
GTGGTAT | 2165 | 0.0 | 19.321072 | 1 |
CAGAGTA | 13565 | 0.0 | 19.31601 | 10-11 |
TGGTATC | 2050 | 0.0 | 19.029026 | 2 |
AGAGTAC | 13090 | 0.0 | 18.939787 | 10-11 |