FastQCFastQC Report
Wed 25 May 2016
SRR2431350_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2431350_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2847400
Sequences flagged as poor quality0
Sequence length100
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT310401.090117299992976No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT216080.7588677389899557No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT195860.6878555875535576No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT191540.6726838519350986No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA78760.2766032169698672No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT75110.2637845051626045No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT57790.20295708365526444No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT35470.12456978295989324No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA85650.057.841581
GTATCAA172500.046.1312031
TAACGCA2400.043.0816734
TACACGG2250.041.776172
TATAACG2600.039.76772
TACCTGG20850.036.2911722
GTACACG2550.035.0219461
ATCAACG235450.033.654263
TCAACGC238450.033.2505534
CAACGCA244800.032.3304565
TATCAAC250700.031.7008152
AACGCAG250500.031.5947936
GTACCTG24850.031.5876261
ATAACGC4300.029.510493
ACGCAGA278350.028.3323047
CGCAGAG280650.028.016388
ACCTGGG26450.027.8968473
GCAGAGT298000.026.18029
GTGGTAT31550.025.9224951
TACATGG149550.024.1983322