Basic Statistics
Measure | Value |
---|---|
Filename | SRR2431350_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2847400 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 31040 | 1.090117299992976 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 21608 | 0.7588677389899557 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 19586 | 0.6878555875535576 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 19154 | 0.6726838519350986 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 7876 | 0.2766032169698672 | No Hit |
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7511 | 0.2637845051626045 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5779 | 0.20295708365526444 | No Hit |
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3547 | 0.12456978295989324 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 8565 | 0.0 | 57.84158 | 1 |
GTATCAA | 17250 | 0.0 | 46.131203 | 1 |
TAACGCA | 240 | 0.0 | 43.081673 | 4 |
TACACGG | 225 | 0.0 | 41.77617 | 2 |
TATAACG | 260 | 0.0 | 39.7677 | 2 |
TACCTGG | 2085 | 0.0 | 36.291172 | 2 |
GTACACG | 255 | 0.0 | 35.021946 | 1 |
ATCAACG | 23545 | 0.0 | 33.65426 | 3 |
TCAACGC | 23845 | 0.0 | 33.250553 | 4 |
CAACGCA | 24480 | 0.0 | 32.330456 | 5 |
TATCAAC | 25070 | 0.0 | 31.700815 | 2 |
AACGCAG | 25050 | 0.0 | 31.594793 | 6 |
GTACCTG | 2485 | 0.0 | 31.587626 | 1 |
ATAACGC | 430 | 0.0 | 29.51049 | 3 |
ACGCAGA | 27835 | 0.0 | 28.332304 | 7 |
CGCAGAG | 28065 | 0.0 | 28.01638 | 8 |
ACCTGGG | 2645 | 0.0 | 27.896847 | 3 |
GCAGAGT | 29800 | 0.0 | 26.1802 | 9 |
GTGGTAT | 3155 | 0.0 | 25.922495 | 1 |
TACATGG | 14955 | 0.0 | 24.198332 | 2 |