##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140412_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 31441964 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.785299957725286 34.0 31.0 34.0 31.0 34.0 2 33.004061387513836 34.0 31.0 34.0 31.0 34.0 3 33.08321512612889 34.0 33.0 34.0 31.0 34.0 4 36.42154249651835 37.0 37.0 37.0 35.0 37.0 5 36.30590356887375 37.0 37.0 37.0 35.0 37.0 6 36.26844630316351 37.0 37.0 37.0 35.0 37.0 7 36.28607414600437 37.0 37.0 37.0 35.0 37.0 8 36.26630690118467 37.0 37.0 37.0 35.0 37.0 9 38.062879564393626 39.0 39.0 39.0 37.0 39.0 10 38.010296939465995 39.0 38.0 39.0 35.0 39.0 11 38.06494110864067 39.0 39.0 39.0 37.0 39.0 12 38.0413169800716 39.0 38.0 39.0 35.0 39.0 13 38.00628799778538 39.0 38.0 39.0 35.0 39.0 14 39.537137215728634 41.0 40.0 41.0 37.0 41.0 15 39.526797117381086 41.0 40.0 41.0 37.0 41.0 16 39.507203398617214 41.0 40.0 41.0 37.0 41.0 17 39.487463919238635 41.0 40.0 41.0 37.0 41.0 18 39.477128718803954 41.0 40.0 41.0 37.0 41.0 19 39.48613658485201 41.0 40.0 41.0 37.0 41.0 20 39.47523230419067 41.0 40.0 41.0 37.0 41.0 21 39.437225995170024 41.0 39.0 41.0 37.0 41.0 22 39.40727179129141 41.0 39.0 41.0 36.0 41.0 23 39.36590592750504 41.0 39.0 41.0 36.0 41.0 24 39.35594096475653 41.0 39.0 41.0 36.0 41.0 25 39.31673495332544 41.0 39.0 41.0 36.0 41.0 26 39.26156762980837 41.0 39.0 41.0 36.0 41.0 27 39.19743741198864 41.0 39.0 41.0 36.0 41.0 28 39.148811410126925 40.0 39.0 41.0 36.0 41.0 29 39.10989170396608 40.0 39.0 41.0 36.0 41.0 30 39.046484596191256 40.0 39.0 41.0 36.0 41.0 31 39.0054585330611 40.0 39.0 41.0 35.0 41.0 32 38.948402459846335 40.0 39.0 41.0 35.0 41.0 33 38.89647761825565 40.0 38.0 41.0 35.0 41.0 34 38.80947513329638 40.0 38.0 41.0 35.0 41.0 35 38.78054236688268 40.0 38.0 41.0 35.0 41.0 36 38.707901357561504 40.0 38.0 41.0 35.0 41.0 37 38.65019045884029 40.0 38.0 41.0 35.0 41.0 38 38.58017886541693 40.0 38.0 41.0 35.0 41.0 39 38.5178242046203 40.0 38.0 41.0 34.0 41.0 40 38.45530307839548 40.0 38.0 41.0 34.0 41.0 41 38.36984432651853 40.0 38.0 41.0 34.0 41.0 42 38.28513686358778 40.0 38.0 41.0 34.0 41.0 43 38.20515967132333 40.0 38.0 41.0 34.0 41.0 44 38.134072159105585 40.0 38.0 41.0 33.0 41.0 45 38.049232897792265 40.0 38.0 41.0 33.0 41.0 46 37.942858276919345 40.0 37.0 41.0 33.0 41.0 47 38.145809180368 40.0 38.0 41.0 33.0 41.0 48 38.15190962625617 40.0 38.0 41.0 34.0 41.0 49 38.14440255704128 40.0 37.0 41.0 34.0 41.0 50 38.07531307522647 40.0 37.0 41.0 33.0 41.0 51 38.00711634934764 40.0 37.0 41.0 33.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 1268.0 3 69.0 4 133.0 5 221.0 6 259.0 7 325.0 8 429.0 9 540.0 10 740.0 11 931.0 12 1317.0 13 1845.0 14 2448.0 15 3394.0 16 4483.0 17 5498.0 18 6256.0 19 7751.0 20 8705.0 21 10040.0 22 12955.0 23 17293.0 24 26188.0 25 39864.0 26 61440.0 27 90432.0 28 128506.0 29 177016.0 30 236076.0 31 310478.0 32 406212.0 33 536863.0 34 749298.0 35 1075629.0 36 1636211.0 37 2762808.0 38 6055531.0 39 1.7041629E7 40 20883.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 31.119034920075705 12.74873624471106 13.68540717029865 42.44682166491459 2 23.30495957568045 19.33543019132011 31.473205681426265 25.88640455157318 3 26.43472271643082 20.653099151185337 22.86672995363776 30.04544817874609 4 28.20722013421299 26.489398054141912 19.588709534811503 25.7146722768336 5 29.337747476588934 28.620457678788767 21.25518940229052 20.786605442331783 6 25.040216953368432 32.95031124646031 20.789203880520947 21.22026791965031 7 21.540015757285392 20.4163009664409 36.34564940027283 21.698033876000874 8 22.399033342828076 23.557974940751155 27.933840265194632 26.109151451226136 9 22.343947725402906 21.825872582259812 30.512674081046594 25.31750561129069 10 23.168517717277457 33.776058009607794 23.854619895881825 19.200804377232924 11 27.61929248440078 25.960464810658774 20.445993768073777 25.97424893686667 12 24.504885295439788 23.53059321530953 25.93967108736983 26.02485040188085 13 23.743532687716325 25.431267588754952 27.172933599186106 23.652266124342614 14 24.12672121881445 25.38280687555014 26.58173643351287 23.908735472122544 15 24.402489615470586 25.45528962503742 25.80962499670822 24.332595762783775 16 24.83958699272094 25.26780133709205 25.60344512830051 24.289166541886505 17 24.958348657863738 25.59754218915841 25.41556246295556 24.02854669002229 18 24.56691636692924 25.853318196026176 25.480965502027797 24.098799935016782 19 24.751997044459436 25.408400060505127 25.43729774641304 24.402305148622393 20 24.719305066312018 25.569528671936652 25.50886134212227 24.202304919629068 21 24.431996866347532 25.58711139121855 25.748361167949625 24.232530574484294 22 24.601500720502063 25.603203413120124 25.49438705546511 24.300908810912702 23 24.673191519055262 25.680499226935105 25.5915028602272 24.054806393782428 24 24.39876033149848 25.846062239007157 25.671505657695448 24.083671771798915 25 24.737293243365738 25.589042315833332 25.43314053805626 24.240523902744666 26 24.636029128674334 25.8642949512204 25.445028216212673 24.054647703892595 27 24.391540800181886 25.810625286387907 25.576495717007813 24.221338196422394 28 24.678018743656658 25.48096478976907 25.457515815970215 24.383500650604056 29 24.67566141997286 25.56996593848125 25.4676035792283 24.286769062317596 30 24.413027566667367 25.67099796915625 25.590173905965514 24.325800558210865 31 24.543838360604266 25.531047820034498 25.39694287544105 24.52817094392019 32 24.530327095963937 25.839348982322097 25.454161063224888 24.17616285848907 33 24.364004888910745 25.75240032272969 25.572867143347978 24.310727645011593 34 24.662913989814502 25.61443684942322 25.310234525233493 24.412414635528783 35 24.67912859680753 25.719647760670895 25.359593684017344 24.241629958504234 36 24.43389158006404 25.807550809519675 25.48872140751867 24.26983620289761 37 24.65894833690693 25.505077993064614 25.39721155557145 24.43876211445701 38 24.616742226944073 25.801966283780782 25.45580689937627 24.125484589898875 39 24.412914425882033 25.71707016693448 25.637979534273033 24.23203587291046 40 24.56206031936814 25.510543588663836 25.513778203688194 24.41361788827983 41 24.625474028403776 25.62195500310175 25.488633098238672 24.2639378702558 42 24.372429872981183 25.707176752982242 25.692341955815333 24.22805141822124 43 24.583073697827814 25.47073211948546 25.527723378588657 24.418470804098067 44 24.6470251030663 25.590056655616443 25.55909478232483 24.20382345899242 45 24.448645262637452 25.605107858489713 25.65471193393714 24.29153494493569 46 24.614879781220715 25.460673713449257 25.438581285741762 24.48586521958827 47 24.604150980207493 25.748808067649918 25.47725241968652 24.169788532456067 48 24.352750960889818 25.73876818634327 25.6746139750137 24.23386687775321 49 24.619438696193242 25.42555570849352 25.494705439419374 24.460300155893865 50 24.602051711799245 25.68612226266373 25.467376782354528 24.244449243182498 51 24.31650412951269 25.648234720907993 25.729631314966877 24.30562983461244 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 299.0 1 282.5 2 266.0 3 329.5 4 393.0 5 623.5 6 854.0 7 1248.0 8 1642.0 9 2477.0 10 3312.0 11 5093.5 12 6875.0 13 9779.0 14 12683.0 15 18460.0 16 24237.0 17 33810.0 18 43383.0 19 59169.0 20 74955.0 21 99479.0 22 124003.0 23 157761.5 24 191520.0 25 234210.0 26 329611.0 27 382322.0 28 446147.5 29 509973.0 30 580090.0 31 650207.0 32 734598.5 33 818990.0 34 903072.5 35 987155.0 36 1075220.0 37 1163285.0 38 1264470.0 39 1365655.0 40 1459348.5 41 1553042.0 42 1625160.0 43 1697278.0 44 1769359.0 45 1841440.0 46 1918572.0 47 1995704.0 48 2054969.5 49 2114235.0 50 2152338.5 51 2190442.0 52 2193377.0 53 2196312.0 54 2154938.0 55 2113564.0 56 2032233.0 57 1950902.0 58 1834576.0 59 1718250.0 60 1578989.5 61 1439729.0 62 1287038.5 63 1134348.0 64 992813.0 65 851278.0 66 728627.5 67 605977.0 68 512451.0 69 418925.0 70 352702.5 71 286480.0 72 243938.0 73 201396.0 74 173128.5 75 125572.0 76 106283.0 77 93692.0 78 81101.0 79 70480.0 80 59859.0 81 50733.5 82 41608.0 83 34700.5 84 27793.0 85 22305.5 86 16818.0 87 12958.5 88 9099.0 89 6626.5 90 4154.0 91 2798.0 92 1442.0 93 979.5 94 517.0 95 333.5 96 150.0 97 94.5 98 39.0 99 34.0 100 29.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.04642839741181562 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 1.8446684819052651E-4 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 1.9082777399019983E-4 22 0.0 23 7.346869298622693E-4 24 3.180462899836664E-5 25 0.0032249893804343773 26 0.002045037644594975 27 0.0094205311093162 28 0.011093454594630285 29 0.008501377331263403 30 0.010517790809759849 31 0.0029133040162503845 32 0.00466255861116055 33 0.008428226684567159 34 0.0075122533694142015 35 0.00448127222586986 36 0.008205594281578594 37 0.015705125799393448 38 0.010390572293766382 39 0.006628084683259608 40 0.002604799114966228 41 6.042879509689662E-5 42 0.007537697072612894 43 0.006535851259164345 44 2.162714771888932E-4 45 0.0031772824369368275 46 0.004220474268083254 47 0.005187334989633599 48 0.006663069775157812 49 0.01855164009474726 50 0.009996194894186636 51 0.0026874911503619813 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3.1441964E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.65071511952895 #Duplication Level Percentage of deduplicated Percentage of total 1 90.15408328376203 78.11915787483551 2 7.287970499670882 12.63015711133025 3 1.572010526053203 4.0864750877381075 4 0.5001206266399125 1.7334323977750143 5 0.2007117694162107 0.8695909176410327 6 0.10564991844961194 0.5492784591587274 7 0.048328610617908566 0.2931396069542526 8 0.0305183245179073 0.2115547714981217 9 0.021185639940229303 0.16521757659771516 >10 0.07611184176877787 1.10772721005327 >50 0.002887732762133337 0.1644146609391594 >100 3.9524126861474845E-4 0.05103151840536558 >500 1.9683456675928696E-5 0.011189101892216028 >1k 6.301675859714634E-6 0.0076337051813465204 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 7.633110959607994E-5 0.0 0.0 3.180462899836664E-6 3.180462899836664E-6 2 1.144966643941199E-4 6.042879509689662E-5 0.0 1.2721851599346656E-5 6.360925799673328E-6 3 2.767002722857898E-4 6.678972089656995E-5 0.0 1.590231449918332E-5 2.226324029885665E-5 4 7.728524846603094E-4 6.997018379640661E-5 0.0 2.8624166098529976E-5 4.134601769787663E-5 5 0.0011322447923418524 7.633110959607994E-5 0.0 2.8624166098529976E-5 6.042879509689662E-5 6 0.0016124946902171886 8.90529611954266E-5 0.0 3.4985091898203306E-5 6.678972089656995E-5 7 0.0019369019060005285 9.859434989493659E-5 0.0 4.134601769787663E-5 9.541388699509993E-5 8 0.0024139713409760282 1.240380530936299E-4 0.0 4.134601769787663E-5 9.541388699509993E-5 9 0.0029991765145459745 1.3039897889330324E-4 0.0 4.7706943497549965E-5 1.144966643941199E-4 10 0.003854721034602037 1.3675990469297656E-4 0.0 5.0887406397386625E-5 1.144966643941199E-4 11 0.004532159632267246 1.8446684819052651E-4 0.0 6.042879509689662E-5 1.3675990469297656E-4 12 0.005362260449124616 2.1627147718889317E-4 0.0 7.633110959607994E-5 1.6220360789166987E-4 13 0.006453159223768591 2.9578304968480974E-4 0.0 7.95115724959166E-5 1.685645336913432E-4 14 0.007470907351716324 3.212267528835031E-4 0.0 8.269203539575326E-5 1.7174499659117987E-4 15 0.00866676140205491 3.212267528835031E-4 0.0 8.269203539575326E-5 1.7492545949101653E-4 16 0.009779923416997743 3.275876786831764E-4 0.0 8.587249829558994E-5 1.781059223908532E-4 17 0.01111571783492914 3.275876786831764E-4 0.0 9.223342409526326E-5 1.9082777399019986E-4 18 0.012410166235162664 3.371290673826864E-4 0.0 9.541388699509993E-5 1.9400823689003652E-4 19 0.013555132879103862 3.371290673826864E-4 0.0 9.859434989493659E-5 2.1627147718889317E-4 20 0.014684197208545878 3.371290673826864E-4 0.0 9.859434989493659E-5 2.2581286588840315E-4 21 0.015832344315386913 3.466704560821964E-4 0.0 9.859434989493659E-5 2.385347174877498E-4 22 0.016872355683633503 3.4985091898203307E-4 0.0 1.0177481279477325E-4 2.385347174877498E-4 23 0.018131818991968824 3.5303138188186973E-4 0.0 1.0813573859444658E-4 2.480761061872598E-4 24 0.019238620081111983 3.562118447817064E-4 0.0 1.1131620149428324E-4 2.5125656908709645E-4 25 0.02050762477814681 3.625727705813797E-4 0.0 1.1767712729395658E-4 2.6397842068644315E-4 26 0.021639869570488662 3.721141592808897E-4 0.0 1.2085759019379324E-4 2.830611980854631E-4 27 0.022857986861126105 4.0391878827925634E-4 0.0 1.240380530936299E-4 2.926025867849731E-4 28 0.02398069026476845 4.7388897207566297E-4 0.0 1.3039897889330324E-4 3.212267528835031E-4 29 0.025249694961803276 5.025131381741929E-4 0.0 1.335794417931399E-4 3.403095302825231E-4 30 0.026461451326641044 5.311373042727229E-4 0.0 1.335794417931399E-4 3.4348999318235975E-4 31 0.027711373246276854 5.311373042727229E-4 0.0 1.3994036759281322E-4 3.466704560821964E-4 32 0.028942212388513643 5.406786929722329E-4 0.0 1.4630129339248654E-4 3.6893369638105303E-4 33 0.03011898366145321 5.502200816717429E-4 0.0 1.4630129339248654E-4 3.78475085080563E-4 34 0.03137526650688869 5.693028590707629E-4 0.0 1.494817562923232E-4 3.8801647378007304E-4 35 0.032746046016718294 6.170098025683129E-4 0.0 1.590231449918332E-4 3.9437739957974636E-4 36 0.03404367487985165 6.170098025683129E-4 0.0 1.590231449918332E-4 3.97557862479583E-4 37 0.03532540142848583 6.297316541676595E-4 0.0 1.6538407079150653E-4 4.134601769787663E-4 38 0.036883828249405795 6.297316541676595E-4 0.0 1.685645336913432E-4 4.3254295437778633E-4 39 0.038295953776933275 6.360925799673328E-4 0.0 1.7174499659117987E-4 4.420843430772963E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTCGTAT 2615 0.0 14.025217 42 TCGTATG 2825 0.0 13.620838 43 CGTATGC 3125 0.0 12.457212 44 TCTCGTA 3095 0.0 12.358941 41 ATCTCGT 3840 0.0 9.902425 40 GATCTCG 4340 0.0 9.072655 39 GATCGGA 4295 0.0 8.804112 1 ACACGTC 4735 0.0 8.36231 13 CGTCTGA 5030 0.0 8.229729 16 GTATGCC 5130 0.0 7.939369 45 ACGTCTG 5380 0.0 7.6943374 15 CCGGAAT 3880 0.0 7.4833746 1 CCCGGAT 4670 0.0 7.1813955 1 ATTACGG 2185 0.0 7.105322 39 CACGTCT 5800 0.0 7.0595503 14 AATTACG 2265 0.0 7.053554 38 CGTCGAT 1090 0.0 7.020886 1 CTCGTTT 4145 0.0 6.9506416 1 CCCCCGT 3225 0.0 6.8396807 1 TTACGGC 2275 0.0 6.824232 40 >>END_MODULE