##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140411_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 32813884 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.76693731226697 34.0 31.0 34.0 31.0 34.0 2 32.98626532598214 34.0 31.0 34.0 31.0 34.0 3 33.066983140429215 34.0 33.0 34.0 31.0 34.0 4 36.4102255923133 37.0 37.0 37.0 35.0 37.0 5 36.29340190268241 37.0 37.0 37.0 35.0 37.0 6 36.254326583223126 37.0 37.0 37.0 35.0 37.0 7 36.27463146392545 37.0 37.0 37.0 35.0 37.0 8 36.253230065663665 37.0 37.0 37.0 35.0 37.0 9 38.04473402173299 39.0 38.0 39.0 37.0 39.0 10 37.9899789064897 39.0 38.0 39.0 35.0 39.0 11 38.04690407877349 39.0 38.0 39.0 37.0 39.0 12 38.024265947913996 39.0 38.0 39.0 35.0 39.0 13 37.990299106317316 39.0 38.0 39.0 35.0 39.0 14 39.515881935829356 41.0 40.0 41.0 37.0 41.0 15 39.50467737985543 41.0 40.0 41.0 37.0 41.0 16 39.48503855867839 41.0 40.0 41.0 37.0 41.0 17 39.46446559023613 41.0 40.0 41.0 37.0 41.0 18 39.45456432405259 41.0 39.0 41.0 36.0 41.0 19 39.46247256191921 41.0 40.0 41.0 37.0 41.0 20 39.451035939543154 41.0 39.0 41.0 37.0 41.0 21 39.413012278583054 41.0 39.0 41.0 36.0 41.0 22 39.38230673942774 41.0 39.0 41.0 36.0 41.0 23 39.33982152188994 41.0 39.0 41.0 36.0 41.0 24 39.32793341379521 41.0 39.0 41.0 36.0 41.0 25 39.28853140335353 41.0 39.0 41.0 36.0 41.0 26 39.23108678631277 41.0 39.0 41.0 36.0 41.0 27 39.16625742932473 41.0 39.0 41.0 36.0 41.0 28 39.11668009187818 40.0 39.0 41.0 36.0 41.0 29 39.07726199068662 40.0 39.0 41.0 36.0 41.0 30 39.01163842719746 40.0 39.0 41.0 35.0 41.0 31 38.97053314383631 40.0 39.0 41.0 35.0 41.0 32 38.91261168595586 40.0 38.0 41.0 35.0 41.0 33 38.857073822775746 40.0 38.0 41.0 35.0 41.0 34 38.770510220612714 40.0 38.0 41.0 35.0 41.0 35 38.73993246273437 40.0 38.0 41.0 35.0 41.0 36 38.6670392934893 40.0 38.0 41.0 35.0 41.0 37 38.6071756394336 40.0 38.0 41.0 35.0 41.0 38 38.53876462780206 40.0 38.0 41.0 34.0 41.0 39 38.47256709995074 40.0 38.0 41.0 34.0 41.0 40 38.40896374839382 40.0 38.0 41.0 34.0 41.0 41 38.32284907205742 40.0 38.0 41.0 34.0 41.0 42 38.23367447145239 40.0 38.0 41.0 34.0 41.0 43 38.15332110639508 40.0 38.0 41.0 34.0 41.0 44 38.07931517646616 40.0 38.0 41.0 33.0 41.0 45 37.99111781464212 40.0 37.0 41.0 33.0 41.0 46 37.883889423147835 40.0 37.0 41.0 33.0 41.0 47 38.08667574981371 40.0 38.0 41.0 33.0 41.0 48 38.091884855812864 40.0 37.0 41.0 33.0 41.0 49 38.08267092063835 40.0 37.0 41.0 33.0 41.0 50 38.01216823342217 40.0 37.0 41.0 33.0 41.0 51 37.94144792490886 40.0 37.0 41.0 33.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 1570.0 3 72.0 4 165.0 5 273.0 6 310.0 7 375.0 8 517.0 9 624.0 10 865.0 11 1075.0 12 1579.0 13 2090.0 14 2836.0 15 3814.0 16 4940.0 17 6002.0 18 6938.0 19 8519.0 20 9615.0 21 11103.0 22 13966.0 23 19072.0 24 28294.0 25 44096.0 26 66391.0 27 96748.0 28 138537.0 29 189161.0 30 252957.0 31 331186.0 32 433580.0 33 572433.0 34 801320.0 35 1144656.0 36 1739275.0 37 2934301.0 38 6383437.0 39 1.7541155E7 40 20037.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 32.50646832956201 12.83617583709292 13.140720446507284 41.516635386837784 2 23.41752350925602 19.368094310323034 30.462468264957604 26.751913915463344 3 26.089240152125846 20.38381375395854 22.54128161116191 30.985664482753705 4 28.215803408093965 25.345042970225652 19.75326358805925 26.685890033621135 5 29.295709096795736 27.554939854117848 21.56294268608983 21.58640836299659 6 25.68722739435539 32.169032474180746 20.928747721543722 21.214992409920143 7 22.237891741191014 21.071251425158934 35.14347463409086 21.547382199559188 8 22.926822682740024 23.926362999271895 27.62976184105484 25.517052476933237 9 22.577574175614203 22.20160527171974 30.299829791560185 24.92099076110588 10 23.313354188733037 33.157684107129775 24.1462516293408 19.38271007479639 11 27.67295697150633 25.985064736621855 20.595239502888475 25.746738788983347 12 24.78082257155871 23.64150404161953 25.65810521455194 25.919568172269823 13 24.09121090328716 25.369953157632906 26.77232600688172 23.76650993219821 14 24.378046804822006 25.35871401264172 26.280104482602546 23.98313469993372 15 24.577986562029658 25.423077012157414 25.6469243323954 24.352012093417528 16 25.003970880131103 25.19916264712827 25.448526605384476 24.34833986735615 17 25.077835955048783 25.540752810609067 25.305809577433745 24.0756016569084 18 24.67989769208668 25.797043714788533 25.398041877639354 24.125016715485433 19 24.937849478592657 25.345783510418947 25.30741865242164 24.408948358566757 20 24.88154099648795 25.560271987308784 25.363044496652698 24.195142519550565 21 24.571409084858423 25.55410210238324 25.621235426257144 24.253253386501193 22 24.776295911815865 25.47770632699256 25.344143960525976 24.401853800665595 23 24.83241179004508 25.574810943567172 25.44352702376742 24.149250242620326 24 24.526035933574448 25.744249079962504 25.57046286510464 24.159252121358403 25 24.890979664561957 25.438547596274212 25.32270906135587 24.34776367780796 26 24.776926568483777 25.739896150285436 25.35286271805487 24.130314563175915 27 24.51028030165349 25.750608207509007 25.501891010811423 24.237220480026078 28 24.86016386982215 25.382327868262877 25.318911594233377 24.438596667681594 29 24.80385228017105 25.50260943601639 25.345184114906434 24.348354168906123 30 24.54849994335648 25.619807658295322 25.470446757819097 24.3612456405291 31 24.735345005081534 25.39856571078674 25.252336671897535 24.613752612234187 32 24.714184062745108 25.68597287803846 25.312220608467978 24.28762245074846 33 24.492173232677633 25.66318628830241 25.45361627591144 24.39102420310852 34 24.812341148970106 25.473870333245742 25.191898230986897 24.521890286797255 35 24.81666364341641 25.641020483495737 25.23799867172037 24.304317201367486 36 24.56170726758816 25.724730692665492 25.396393826129486 24.317168213616853 37 24.78950729379984 25.398831934986354 25.272279823786548 24.53938094742726 38 24.759747283379845 25.717274492708047 25.284493333764495 24.23848489014761 39 24.502558841779706 25.684599892965075 25.51600769481149 24.29683357044373 40 24.733669841909155 25.407581963166344 25.373126140857693 24.48562205406681 41 24.804882789489053 25.53728353739239 25.329679227677715 24.328154445440838 42 24.507988704288703 25.655532250979547 25.559711869576024 24.276767175155726 43 24.767586905742572 25.364940406824672 25.35411805663262 24.51335463080014 44 24.78736700419116 25.53530195939418 25.40784345228242 24.269487584132246 45 24.555420347681483 25.53219929180791 25.534381363837078 24.37799899667353 46 24.774135022346954 25.353800884077067 25.286539980892663 24.585524112683316 47 24.739594095324684 25.64824902515025 25.34049797764468 24.271658901880382 48 24.45650593749042 25.652065176558807 25.580298036607335 24.31113084934344 49 24.74807958672732 25.309162929697592 25.381209860514193 24.561547623060896 50 24.753970658097003 25.586000069063008 25.357089422787176 24.302939850052812 51 24.457395860964613 25.55552887240981 25.624973790920297 24.36210147570528 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 192.0 1 207.5 2 223.0 3 287.5 4 352.0 5 565.5 6 779.0 7 1186.0 8 1593.0 9 2465.5 10 3338.0 11 5064.0 12 6790.0 13 9760.0 14 12730.0 15 18301.0 16 23872.0 17 33264.5 18 42657.0 19 58491.5 20 74326.0 21 99109.0 22 123892.0 23 158349.5 24 192807.0 25 234895.0 26 331261.5 27 385540.0 28 450336.0 29 515132.0 30 585938.5 31 656745.0 32 742633.5 33 828522.0 34 913701.0 35 998880.0 36 1090491.5 37 1182103.0 38 1286264.0 39 1390425.0 40 1487046.5 41 1583668.0 42 1662279.5 43 1740891.0 44 1815661.0 45 1890431.0 46 1974363.0 47 2058295.0 48 2124999.0 49 2191703.0 50 2240890.0 51 2290077.0 52 2296493.0 53 2302909.0 54 2268608.0 55 2234307.0 56 2154188.5 57 2074070.0 58 1957726.0 59 1841382.0 60 1694580.5 61 1547779.0 62 1389219.5 63 1230660.0 64 1077601.0 65 924542.0 66 792013.0 67 659484.0 68 558219.0 69 456954.0 70 385469.0 71 313984.0 72 266358.5 73 218733.0 74 188925.0 75 137491.0 76 115865.0 77 102142.5 78 88420.0 79 76381.0 80 64342.0 81 54420.0 82 44498.0 83 36915.0 84 29332.0 85 23768.5 86 18205.0 87 13946.5 88 9688.0 89 7037.5 90 4387.0 91 2931.5 92 1476.0 93 1025.5 94 575.0 95 363.5 96 152.0 97 97.0 98 42.0 99 38.5 100 35.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.04994836941582411 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 1.767544494275655E-4 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 2.3160927856025825E-4 22 0.0 23 8.197749464830192E-4 24 1.2189962029487273E-5 25 0.002953018301643292 26 0.0021271483741455294 27 0.009523407835536932 28 0.011257429934231499 29 0.00844459619592731 30 0.010431560006733735 31 0.0029743507351948947 32 0.004595615685116702 33 0.0088133425473193 34 0.007563871439296854 35 0.004619995609175677 36 0.008426311252883078 37 0.016045037521312623 38 0.010778973924574123 39 0.0065947694579526145 40 0.0025964619122807895 41 5.4854829132692734E-5 42 0.007597393834877944 43 0.006573437024401012 44 2.0722935450128365E-4 45 0.003154152675129832 46 0.004144587090025673 47 0.0050222643561487566 48 0.006734954021291719 49 0.018595787075982837 50 0.009950056506568989 51 0.0025233221401038657 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3.2813884E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.02863710865107 #Duplication Level Percentage of deduplicated Percentage of total 1 89.89894644057999 77.33883839786714 2 7.377151894408539 12.692926464389398 3 1.629241807594883 4.204843566834686 4 0.5413269148360345 1.862784668542995 5 0.2260360258283185 0.9722785619733048 6 0.11403371462740841 0.5886099032299676 7 0.05978354374839499 0.36001677531398873 8 0.03738269271938444 0.25727856848801095 9 0.02304746644731772 0.17844679145430967 >10 0.08895034337501526 1.2497380939814562 >50 0.003484431290337506 0.20093199843961534 >100 5.821396456731349E-4 0.07142325201537746 >500 2.6198670010394993E-5 0.01563080201181843 >1k 6.386228642604092E-6 0.0062521554578893026 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 7.313977217692365E-5 9.142471522115456E-6 0.0 9.142471522115456E-6 0.0 2 1.1275714877275729E-4 6.094981014743637E-5 0.0 2.7427414566346367E-5 3.0474905073718187E-6 3 2.6817916464872E-4 7.009228166955182E-5 0.0 3.352239558109E-5 1.2189962029487275E-5 4 7.192077597397492E-4 7.923475319166729E-5 0.0 3.961737659583364E-5 3.961737659583364E-5 5 9.965293959105846E-4 8.837722471378274E-5 3.0474905073718187E-6 4.87598481179491E-5 4.87598481179491E-5 6 0.0015176502726711658 9.142471522115456E-5 3.0474905073718187E-6 5.180733862532091E-5 6.094981014743637E-5 7 0.001898586586092643 1.0666216775801365E-4 3.0474905073718187E-6 5.7902319640064555E-5 7.009228166955182E-5 8 0.0025080846875670066 1.4323205384647548E-4 3.0474905073718187E-6 6.094981014743637E-5 7.009228166955182E-5 9 0.0032364349188288713 1.5237452536859093E-4 3.0474905073718187E-6 6.704479116218E-5 9.142471522115456E-5 10 0.004260391729305802 1.7675444942756547E-4 3.0474905073718187E-6 6.704479116218E-5 1.0056718674327002E-4 11 0.0050862616568035654 2.2551429754551458E-4 3.0474905073718187E-6 7.009228166955182E-5 1.0970965826538547E-4 12 0.006119360938802612 2.498942216044891E-4 3.0474905073718187E-6 7.313977217692365E-5 1.2494711080224456E-4 13 0.007466351743060955 2.895115982003228E-4 3.0474905073718187E-6 7.313977217692365E-5 1.2494711080224456E-4 14 0.008773725170723466 3.1693901276666915E-4 3.0474905073718187E-6 7.923475319166729E-5 1.310420918169882E-4 15 0.010270043009843029 3.2303399378141276E-4 3.0474905073718187E-6 8.532973420641091E-5 1.310420918169882E-4 16 0.01172979096287413 3.3217646530352824E-4 3.0474905073718187E-6 9.75196962358982E-5 1.3408958232436E-4 17 0.013253536216560039 3.443664273330155E-4 3.0474905073718187E-6 1.0970965826538547E-4 1.493270348612191E-4 18 0.014841278770900756 3.443664273330155E-4 3.0474905073718187E-6 1.2189962029487274E-4 1.5237452536859093E-4 19 0.016291884252409742 3.5046140834775913E-4 3.0474905073718187E-6 1.2494711080224456E-4 1.7065946841282183E-4 20 0.017736394752903985 3.5350889885513094E-4 3.0474905073718187E-6 1.310420918169882E-4 1.7065946841282183E-4 21 0.019208332667964574 3.717938418993619E-4 3.0474905073718187E-6 1.3408958232436E-4 1.7370695892019366E-4 22 0.020619320772877724 3.717938418993619E-4 3.0474905073718187E-6 1.493270348612191E-4 1.828494304423091E-4 23 0.02206992625438671 3.839838039288491E-4 3.0474905073718187E-6 1.5542201587596274E-4 1.828494304423091E-4 24 0.02352662671691044 3.931262754509646E-4 3.0474905073718187E-6 1.6456448739807821E-4 1.8589692094968095E-4 25 0.0249802796889268 4.022687469730801E-4 3.0474905073718187E-6 1.7065946841282183E-4 1.8894441145705275E-4 26 0.026564974752760144 4.114112184951955E-4 3.0474905073718187E-6 1.7065946841282183E-4 2.1027684500865549E-4 27 0.02811919491151977 4.3579114255417006E-4 3.0474905073718187E-6 1.828494304423091E-4 2.2551429754551458E-4 28 0.029856264500721708 4.8455099067211914E-4 3.0474905073718187E-6 1.8894441145705275E-4 2.559892026192328E-4 29 0.031596381580431016 4.997884432089782E-4 3.0474905073718187E-6 1.8894441145705275E-4 2.651316741413482E-4 30 0.03337611603673616 5.333108387900683E-4 3.0474905073718187E-6 1.9199190196442456E-4 2.712266551560919E-4 31 0.035201562850651874 5.455008008195555E-4 3.0474905073718187E-6 1.9199190196442456E-4 2.773216361708355E-4 32 0.03713367183232561 5.54643272341671E-4 3.0474905073718187E-6 1.980868829791682E-4 2.925590887076946E-4 33 0.03899568853232979 5.607382533564146E-4 3.0474905073718187E-6 1.980868829791682E-4 3.1998650327404095E-4 34 0.04075409055508333 5.820706869080173E-4 3.0474905073718187E-6 1.980868829791682E-4 3.2912897479615643E-4 35 0.04249420763479264 6.064506109669919E-4 3.0474905073718187E-6 2.0113437348654004E-4 3.443664273330155E-4 36 0.04433184441073784 6.247355540112228E-4 3.0474905073718187E-6 2.0722935450128365E-4 3.5350889885513094E-4 37 0.04615119624363882 6.308305350259664E-4 3.0474905073718187E-6 2.1637182602339913E-4 3.626513703772464E-4 38 0.04805587781074621 6.308305350259664E-4 3.0474905073718187E-6 2.1941931653077094E-4 3.748413324067337E-4 39 0.05001846169749366 6.308305350259664E-4 3.0474905073718187E-6 2.3160927856025822E-4 3.900787849435928E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGGCTA 2535 0.0 7.3697853 1 CGCGTAT 660 1.6871127E-8 7.1619296 1 CCCGGTT 4025 0.0 6.59889 1 CTCCGAT 4865 0.0 6.5699224 1 ATTACGG 2270 0.0 6.541941 39 CCCGGAT 4860 0.0 6.5303664 1 CCCCCGT 3305 0.0 6.4700384 1 TCGTATG 2530 0.0 6.403944 43 GTCGGTT 3555 0.0 6.3949404 1 CTCGTAT 2185 0.0 6.3846545 42 TTACGGC 2400 0.0 6.1876235 40 CCGGAAT 4120 0.0 6.1189303 1 CGCCCAT 3560 0.0 6.0065947 1 CGTCGGT 1740 0.0 5.950635 1 CGGGCAT 5260 0.0 5.9481754 1 CGCCTGT 5435 0.0 5.880896 1 CCCGAAT 3465 0.0 5.8464737 1 CGCGCAT 1310 3.6379788E-12 5.842011 1 CGGGGAT 4945 0.0 5.780856 1 CGGGTTT 3840 0.0 5.744465 1 >>END_MODULE