FastQCFastQC Report
Fri 27 May 2016
SRR2140410_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2140410_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32102149
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT23200.07.370702342
TCGTATG25100.07.35149243
CGCGTAT6204.0596206E-87.26068971
CCCGGAT43900.07.1779941
CGGGCTA25300.07.1171981
CCCCGAT32100.06.8716431
CGCCCAT33650.06.75578551
TCTCGTA27750.06.72973141
GCCGGTT26800.06.6348621
CTCCGAT47350.06.5599221
CGTATGC28550.06.541931644
ATTACGG22750.06.52748439
CGCCCGT19250.06.43089631
CCCCCGT30850.06.4204741
GTCCGAT18100.06.34207151
CGGGTGT40200.06.2149341
CGGGGAT43350.06.12678241
CGTCGAT11401.6370905E-116.12063361
TTACGGC22100.06.10857940
CGCCCTA16000.06.04906231
Produced by FastQC (version 0.11.5)