##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140410_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 32102149 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.74675904096016 34.0 31.0 34.0 31.0 34.0 2 32.96710104983937 34.0 31.0 34.0 31.0 34.0 3 33.04734184617983 34.0 33.0 34.0 31.0 34.0 4 36.39642791515297 37.0 37.0 37.0 35.0 37.0 5 36.277439993191734 37.0 37.0 37.0 35.0 37.0 6 36.23810418424013 37.0 37.0 37.0 35.0 37.0 7 36.25866221604043 37.0 37.0 37.0 35.0 37.0 8 36.23791170491421 37.0 37.0 37.0 35.0 37.0 9 38.026142922705894 39.0 38.0 39.0 35.0 39.0 10 37.96948730753196 39.0 38.0 39.0 35.0 39.0 11 38.025955863577856 39.0 38.0 39.0 35.0 39.0 12 38.003566957464436 39.0 38.0 39.0 35.0 39.0 13 37.96943983407466 39.0 38.0 39.0 35.0 39.0 14 39.48794250503292 41.0 40.0 41.0 37.0 41.0 15 39.47774969831459 41.0 40.0 41.0 37.0 41.0 16 39.45856182400748 41.0 39.0 41.0 37.0 41.0 17 39.43891419854789 41.0 39.0 41.0 36.0 41.0 18 39.42891773382524 41.0 39.0 41.0 36.0 41.0 19 39.4389158495277 41.0 39.0 41.0 37.0 41.0 20 39.42799003892232 41.0 39.0 41.0 36.0 41.0 21 39.390571173288116 41.0 39.0 41.0 36.0 41.0 22 39.36075927502548 41.0 39.0 41.0 36.0 41.0 23 39.31850562403159 41.0 39.0 41.0 36.0 41.0 24 39.30823276036754 41.0 39.0 41.0 36.0 41.0 25 39.26867410029154 41.0 39.0 41.0 36.0 41.0 26 39.211588202397294 41.0 39.0 41.0 36.0 41.0 27 39.147638683005304 40.0 39.0 41.0 36.0 41.0 28 39.09830921288167 40.0 39.0 41.0 36.0 41.0 29 39.059822132156945 40.0 39.0 41.0 36.0 41.0 30 38.99671174661858 40.0 39.0 41.0 35.0 41.0 31 38.956149135062574 40.0 39.0 41.0 35.0 41.0 32 38.89867351248043 40.0 38.0 41.0 35.0 41.0 33 38.846271786976004 40.0 38.0 41.0 35.0 41.0 34 38.761624743564674 40.0 38.0 41.0 35.0 41.0 35 38.733173564174784 40.0 38.0 41.0 35.0 41.0 36 38.66138939794965 40.0 38.0 41.0 35.0 41.0 37 38.60333808182125 40.0 38.0 41.0 35.0 41.0 38 38.53503832406983 40.0 38.0 41.0 34.0 41.0 39 38.47197818438884 40.0 38.0 41.0 34.0 41.0 40 38.411029959396174 40.0 38.0 41.0 34.0 41.0 41 38.326533747008654 40.0 38.0 41.0 34.0 41.0 42 38.24055610731855 40.0 38.0 41.0 34.0 41.0 43 38.16215727489147 40.0 38.0 41.0 34.0 41.0 44 38.08963702087359 40.0 38.0 41.0 33.0 41.0 45 38.00533425347942 40.0 38.0 41.0 33.0 41.0 46 37.90026932464864 40.0 37.0 41.0 33.0 41.0 47 38.106460069075126 40.0 38.0 41.0 33.0 41.0 48 38.11384957436962 40.0 38.0 41.0 33.0 41.0 49 38.10813811872844 40.0 37.0 41.0 33.0 41.0 50 38.04185778964517 40.0 37.0 41.0 33.0 41.0 51 37.97527227850073 40.0 37.0 41.0 33.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 1204.0 3 53.0 4 121.0 5 206.0 6 254.0 7 313.0 8 451.0 9 566.0 10 745.0 11 881.0 12 1295.0 13 1868.0 14 2596.0 15 3430.0 16 4375.0 17 5500.0 18 6377.0 19 7962.0 20 8729.0 21 10496.0 22 13383.0 23 18439.0 24 27815.0 25 42517.0 26 65628.0 27 95805.0 28 137511.0 29 189367.0 30 251817.0 31 332786.0 32 432210.0 33 570381.0 34 795359.0 35 1127410.0 36 1704480.0 37 2868104.0 38 6251743.0 39 1.7100738E7 40 19234.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 32.08416943212432 13.16534442865568 13.412864367562763 41.33762177165724 2 23.265264889275795 19.617375148311723 30.547123184806104 26.570236777606382 3 25.818389915267044 20.60584791379543 22.863618881091107 30.712143289846423 4 27.853988840435573 25.596529378765265 20.03259968670633 26.516882094092832 5 29.00251631129118 27.915832052240493 21.754070109138176 21.327581527330146 6 25.403293094178835 32.545712126624295 21.0698978439107 20.98109693528617 7 21.90219414905837 21.276469684319267 35.5239644548407 21.29737171178166 8 22.632438096278225 24.211432075777857 27.890419423322722 25.2657104046212 9 22.31952758053674 22.413122560735733 30.56751122798664 24.69983863074089 10 22.974256334054147 33.54128410531021 24.30593042229042 19.178529138345223 11 27.386543499003757 26.31803247813721 20.777496858543646 25.517927164315385 12 24.500561832893528 23.919300286909827 25.899297092100472 25.68084078809617 13 23.76323466693772 25.67512536310264 27.058300676381506 23.503339293578136 14 24.075609393003564 25.666013823560537 26.52447660123938 23.733900182196525 15 24.261911562369235 25.734946903398896 25.893553107612828 24.10958842661904 16 24.694309405890554 25.472441112898704 25.732576345589823 24.10067313562092 17 24.759962331493757 25.835342051399735 25.565385046340666 23.83931057076584 18 24.383193162551205 26.112865528099068 25.639364517310042 23.864576792039685 19 24.610470781878185 25.67960169893922 25.570010904877428 24.139916614305168 20 24.571143196675088 25.860583352223554 25.603500874661073 23.96477257644029 21 24.272750598878474 25.86446632803242 25.862111341103066 24.00067173198604 22 24.47592215711166 25.779523358389493 25.61692365205831 24.127630832440534 23 24.524954642846172 25.858717566776928 25.714997021046926 23.901330769329974 24 24.224273750197924 26.046360830178845 25.82170916128559 23.907656258337646 25 24.572272526813073 25.75748905267566 25.588171516082113 24.082066904429155 26 24.45553045463268 26.061410799239415 25.598722428096863 23.884336318031046 27 24.211367196138994 26.045908758261227 25.74579216030709 23.996931885292685 28 24.521672400951687 25.703389861398605 25.599260225984118 24.175677511665594 29 24.48957148728209 25.806768271361896 25.602664157453383 24.10099608390263 30 24.234281296140747 25.934086379184667 25.720807364811606 24.110824959862985 31 24.3937486003233 25.731606671072942 25.53818065719301 24.336464071410745 32 24.3864388762192 26.001408132471244 25.58658193864035 24.025571052669207 33 24.200299295463115 25.95887198333775 25.72708560388573 24.113743117313405 34 24.477861098746853 25.804854974327483 25.475291105560625 24.241992821365038 35 24.491000610360956 25.940399948574296 25.514025763381877 24.05457367768287 36 24.234686256139792 26.022419659522168 25.676615871247755 24.066278213090285 37 24.486849937198173 25.72145460969166 25.545628181080502 24.24606727202967 38 24.46851589201333 26.0042851576989 25.548581372542728 23.97861757774504 39 24.188713754139595 25.97169879356867 25.784723977801278 24.054863474490457 40 24.416871219834256 25.72337089082859 25.649230524236877 24.21052736510028 41 24.49579431294381 25.83818822970827 25.60951490846697 24.05650254888095 42 24.199789730043484 25.953616745433788 25.83322928247776 24.013364242044968 43 24.417639392543663 25.69277308767251 25.658499035127164 24.23108848465666 44 24.48423356007566 25.823950529808364 25.685143320468434 24.006672589647543 45 24.25247457653307 25.840367894619597 25.80565262632811 24.10150490251922 46 24.457753336882774 25.675568707027413 25.565484370612946 24.30119358547687 47 24.422554967907313 25.957931815178465 25.613404020590608 24.006109196323617 48 24.153953271028037 25.97186292834891 25.842803738317755 24.031380062305296 49 24.43437223680693 25.61468368975343 25.665316135770105 24.28562793766953 50 24.431007617469636 25.888225022904248 25.61146119636443 24.069306163261682 51 24.13563174241819 25.86967800560319 25.886998157553258 24.107692094425357 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 202.0 1 219.5 2 237.0 3 294.0 4 351.0 5 597.5 6 844.0 7 1285.0 8 1726.0 9 2671.0 10 3616.0 11 5482.5 12 7349.0 13 10477.0 14 13605.0 15 19660.5 16 25716.0 17 35666.5 18 45617.0 19 62475.0 20 79333.0 21 105116.0 22 130899.0 23 166513.0 24 202127.0 25 247072.0 26 348393.0 27 404769.0 28 472528.0 29 540287.0 30 614247.5 31 688208.0 32 776015.0 33 863822.0 34 950529.5 35 1037237.0 36 1128132.0 37 1219027.0 38 1323622.0 39 1428217.0 40 1522603.5 41 1616990.0 42 1690920.5 43 1764851.0 44 1834881.0 45 1904911.0 46 1979335.5 47 2053760.0 48 2108932.5 49 2164105.0 50 2201498.5 51 2238892.0 52 2233572.0 53 2228252.0 54 2185262.5 55 2142273.0 56 2054121.5 57 1965970.0 58 1845450.5 59 1724931.0 60 1582437.0 61 1439943.0 62 1285325.5 63 1130708.0 64 986639.0 65 842570.0 66 718098.5 67 593627.0 68 499313.0 69 404999.0 70 339674.0 71 274349.0 72 231203.0 73 188057.0 74 161212.0 75 114818.5 76 95270.0 77 83565.5 78 71861.0 79 61642.0 80 51423.0 81 43554.0 82 35685.0 83 29264.0 84 22843.0 85 18420.0 86 13997.0 87 10636.5 88 7276.0 89 5321.0 90 3366.0 91 2259.5 92 1153.0 93 757.0 94 361.0 95 231.5 96 102.0 97 65.0 98 28.0 99 25.5 100 23.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.04558261816054745 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 2.3985933153571745E-4 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 1.8690337522263696E-4 22 0.0 23 8.317200197407344E-4 24 1.8690337522263697E-5 25 0.0028845420909360308 26 0.0019593703835839777 27 0.009214336398476002 28 0.01151947802622186 29 0.008862335041806703 30 0.010438553506184275 31 0.0030714454661586676 32 0.004597823030476869 33 0.008613130541509853 34 0.007641232990352141 35 0.004585362805462027 36 0.008510333685137402 37 0.016054999931624517 38 0.010737598906540493 39 0.006554078357807137 40 0.002735019390757921 41 6.853123758163355E-5 42 0.007666153440381827 43 0.006429476107658712 44 2.180539377597431E-4 45 0.003115056253710616 46 0.0040682634673460645 47 0.005267560125024651 48 0.006694255889224114 49 0.019092179778992364 50 0.010282800693498744 51 0.0025356557905204416 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3.2102149E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.07919707262333 #Duplication Level Percentage of deduplicated Percentage of total 1 89.81465484553112 77.31173374458118 2 7.457543484987772 12.83878710643841 3 1.6604609928761906 4.287934471115802 4 0.5259092664153175 1.8107938954433154 5 0.222655652091389 0.9583009877854064 6 0.11398103350717813 0.5886837507483401 7 0.056388075904903585 0.3397688208854967 8 0.034262344554291925 0.23594200872472137 9 0.026325950322407667 0.20395049993339587 >10 0.08452908117040366 1.1973196447313457 >50 0.002886883187450247 0.1643970617669408 >100 3.761388807783814E-4 0.04796418306939254 >500 2.6250570813274084E-5 0.014423824776200371 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 6.230112507421232E-5 6.2301125074212325E-6 0.0 9.345168761131849E-6 9.345168761131849E-6 2 9.345168761131848E-5 5.607101256679109E-5 0.0 2.1805393775974314E-5 1.557528126855308E-5 3 1.900184314763476E-4 6.230112507421232E-5 0.0 2.8035506283395546E-5 2.492045002968493E-5 4 5.389047318919366E-4 6.853123758163355E-5 0.0 4.672584380565924E-5 3.7380675044527395E-5 5 7.569586696516797E-4 7.78764063427654E-5 0.0 4.984090005936986E-5 5.607101256679109E-5 6 0.0011463407013655067 9.65667438650291E-5 0.0 5.607101256679109E-5 6.230112507421232E-5 7 0.0013799699203938028 1.1214202513358218E-4 0.0 5.9186068820501705E-5 7.164629383534417E-5 8 0.0016821303770037327 1.4017753141697773E-4 0.0 5.9186068820501705E-5 7.78764063427654E-5 9 0.0021151231962695085 1.4329258767068834E-4 0.0 6.853123758163355E-5 8.099146259647602E-5 10 0.002735019390757921 1.6198292519295203E-4 0.0 7.164629383534417E-5 9.033663135760786E-5 11 0.0033455704164852018 1.8378831896892635E-4 0.0 7.78764063427654E-5 1.0591191262616095E-4 12 0.004030882792301537 2.460894440431387E-4 0.0 7.78764063427654E-5 1.1214202513358218E-4 13 0.004818992024490323 2.710098940728236E-4 0.0 7.78764063427654E-5 1.3083236265584586E-4 14 0.005737933619334955 2.897002315950873E-4 0.0 8.722157510389725E-5 1.370624751632671E-4 15 0.006734751620522352 2.897002315950873E-4 0.0 8.722157510389725E-5 1.4017753141697773E-4 16 0.007578931865277929 2.9593034410250855E-4 0.0 9.345168761131848E-5 1.4640764392439895E-4 17 0.008485413235107719 3.1462068162477224E-4 0.0 9.968180011873972E-5 1.557528126855308E-4 18 0.009416815054967193 3.1773573787848285E-4 0.0 1.0591191262616095E-4 1.557528126855308E-4 19 0.01031706631228956 3.2396585038590406E-4 0.0 1.0591191262616095E-4 1.8067326271521572E-4 20 0.011239122963387903 3.3019596289332533E-4 0.0 1.1525708138729279E-4 1.962485439837688E-4 21 0.012158064558232535 3.3019596289332533E-4 0.0 1.1525708138729279E-4 1.9936360023747944E-4 22 0.012977324352958427 3.3331101914703593E-4 0.0 1.1837213764100341E-4 2.2116899401345374E-4 23 0.013868230441519663 3.3954113165445715E-4 0.0 1.3083236265584586E-4 2.3051416277458558E-4 24 0.014746676305066056 3.48886300415589E-4 0.0 1.4017753141697773E-4 2.3362921902829621E-4 25 0.015787105093805404 3.6134652543043144E-4 0.0 1.4017753141697773E-4 2.460894440431387E-4 26 0.016877374782604117 3.644615816841421E-4 0.0 1.4640764392439895E-4 2.647797815654024E-4 27 0.01784927233376183 3.862669754601164E-4 0.0 1.4640764392439895E-4 2.8035506283395547E-4 28 0.01894888719132168 4.236476505046438E-4 0.0 1.4952270017810958E-4 2.9904540035621916E-4 29 0.020182449467791082 4.5168315678803934E-4 0.0 1.6509798144666266E-4 3.0527551286364037E-4 30 0.021394206350484512 4.890638318325667E-4 0.0 1.7132809395408388E-4 3.08390569117351E-4 31 0.02254366210810373 4.921788880862774E-4 0.0 1.7132809395408388E-4 3.1773573787848285E-4 32 0.023777224384573133 4.95293944339988E-4 0.0 1.744431502077945E-4 3.1773573787848285E-4 33 0.024970290929744298 4.984090005936986E-4 0.0 1.7755820646150512E-4 3.3331101914703593E-4 34 0.02618516286869144 5.077541693548304E-4 0.0 1.8067326271521572E-4 3.3642607540074654E-4 35 0.027481026270235055 5.638251819216215E-4 0.0 1.8378831896892635E-4 3.3954113165445715E-4 36 0.028786234840539802 5.669402381753321E-4 0.0 1.8690337522263696E-4 3.5511641292301023E-4 37 0.0300478326232926 5.76285406936464E-4 0.0 1.931334877300582E-4 3.5511641292301023E-4 38 0.03138419175613446 5.794004631901746E-4 0.0 2.0247865649119005E-4 3.706916941915633E-4 39 0.03281711763284134 5.825155194438852E-4 0.0 2.118238252523219E-4 3.862669754601164E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTCGTAT 2320 0.0 7.3707023 42 TCGTATG 2510 0.0 7.351492 43 CGCGTAT 620 4.0596206E-8 7.2606897 1 CCCGGAT 4390 0.0 7.177994 1 CGGGCTA 2530 0.0 7.117198 1 CCCCGAT 3210 0.0 6.871643 1 CGCCCAT 3365 0.0 6.7557855 1 TCTCGTA 2775 0.0 6.729731 41 GCCGGTT 2680 0.0 6.634862 1 CTCCGAT 4735 0.0 6.559922 1 CGTATGC 2855 0.0 6.5419316 44 ATTACGG 2275 0.0 6.527484 39 CGCCCGT 1925 0.0 6.4308963 1 CCCCCGT 3085 0.0 6.420474 1 GTCCGAT 1810 0.0 6.3420715 1 CGGGTGT 4020 0.0 6.214934 1 CGGGGAT 4335 0.0 6.1267824 1 CGTCGAT 1140 1.6370905E-11 6.1206336 1 TTACGGC 2210 0.0 6.108579 40 CGCCCTA 1600 0.0 6.0490623 1 >>END_MODULE