##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140407_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 18455781 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.35205315884492 33.0 31.0 34.0 30.0 34.0 2 32.41296794754987 34.0 31.0 34.0 30.0 34.0 3 32.442069073099645 34.0 31.0 34.0 30.0 34.0 4 36.05008647425974 37.0 35.0 37.0 35.0 37.0 5 35.96417848694672 37.0 35.0 37.0 35.0 37.0 6 36.06170678986709 37.0 35.0 37.0 35.0 37.0 7 35.99974279061937 37.0 35.0 37.0 35.0 37.0 8 36.00115123819469 37.0 35.0 37.0 35.0 37.0 9 37.72970344630769 39.0 38.0 39.0 35.0 39.0 10-11 37.67511328835123 39.0 37.0 39.0 35.0 39.0 12-13 37.65985357108431 39.0 37.0 39.0 35.0 39.0 14-15 39.027914857680635 40.0 38.0 41.0 35.0 41.0 16-17 39.03144348104261 40.0 38.0 41.0 35.0 41.0 18-19 39.08108638155167 40.5 38.5 41.0 35.0 41.0 20-21 39.09363315490792 41.0 39.0 41.0 35.0 41.0 22-23 39.046039351215 40.0 39.0 41.0 35.0 41.0 24-25 39.007266363790166 40.5 38.0 41.0 35.0 41.0 26-27 38.90652588613726 40.0 38.0 41.0 35.0 41.0 28-29 38.83795922841666 40.0 38.0 41.0 35.0 41.0 30-31 38.74354375592759 40.0 38.0 41.0 35.0 41.0 32-33 38.62240826257205 40.0 38.0 41.0 34.0 41.0 34-35 38.55347247217594 40.0 38.0 41.0 34.0 41.0 36-37 38.50683429841344 40.0 38.0 41.0 34.0 41.0 38-39 38.459452969457956 40.0 38.0 41.0 34.0 41.0 40-41 38.41394557658094 40.0 38.0 41.0 34.0 41.0 42-43 38.35064903552137 40.0 38.0 41.0 33.5 41.0 44-45 38.27569052586851 40.0 38.0 41.0 33.0 41.0 46-47 38.19696314093021 40.0 37.5 41.0 33.0 41.0 48-49 38.10546348434685 40.0 37.0 41.0 33.0 41.0 50-51 38.004862261104726 40.0 37.0 41.0 33.0 41.0 52-53 37.89352238925656 40.0 37.0 41.0 33.0 41.0 54-55 37.73190179331146 40.0 36.0 41.0 33.0 41.0 56-57 37.57271353045087 39.0 36.0 41.0 32.5 41.0 58-59 37.372502483879856 39.0 35.5 41.0 32.0 41.0 60-61 37.16360633152851 39.0 35.0 41.0 32.0 41.0 62-63 36.91276310330903 38.5 35.0 40.5 31.5 41.0 64-65 36.64930050082465 38.0 35.0 40.0 31.0 41.0 66-67 36.368247999845906 37.0 35.0 40.0 31.0 41.0 68-69 36.054152118260134 37.0 35.0 39.5 31.0 41.0 70-71 35.7408005031216 36.0 34.5 39.0 31.0 41.0 72-73 35.419561301775765 36.0 34.0 39.0 31.0 40.5 74-75 35.0975327233278 35.0 34.0 37.5 30.0 40.0 76-77 34.80269018139145 35.0 34.0 37.0 30.0 39.0 78-79 34.51460563230303 35.0 34.0 37.0 30.0 39.0 80-81 34.26878048559226 35.0 34.0 36.0 30.0 38.5 82-83 34.046968628342654 35.0 34.0 36.0 30.0 37.0 84-85 33.85024001045478 35.0 34.0 35.0 30.0 37.0 86-87 33.698140273650495 35.0 34.0 35.0 30.0 36.5 88-89 33.57631477680295 35.0 33.0 35.0 30.0 36.0 90-91 33.486539500601765 35.0 33.0 35.0 30.0 36.0 92-93 33.42649747156014 35.0 33.0 35.0 30.0 36.0 94-95 33.400105771382336 35.0 33.0 35.0 30.0 35.0 96-97 33.41930114883252 35.0 33.0 35.0 30.0 35.0 98-99 33.466380633967326 35.0 33.0 35.0 30.0 35.0 100 33.43311195908887 35.0 33.0 35.0 30.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 22.0 20 103.0 21 496.0 22 2326.0 23 7721.0 24 20143.0 25 42847.0 26 77737.0 27 123384.0 28 177151.0 29 239255.0 30 310095.0 31 393011.0 32 497140.0 33 640432.0 34 871526.0 35 1242643.0 36 1970256.0 37 3589402.0 38 4709332.0 39 3280905.0 40 259852.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.7305406365626 19.51706080604229 13.31039309580017 24.442005461594935 2 16.23650063901387 21.6222981839674 38.246959042264315 23.894242134754418 3 17.896074931645355 26.08249590088875 30.797134902753804 25.2242942647121 4 13.225298524364726 18.165940426251286 37.224430503614585 31.3843305457694 5 13.573806324954566 37.40070066082392 34.96909819319249 14.056394821029025 6 30.5238840781211 37.13140191610128 18.148258221509284 14.196455784268332 7 26.422612887772974 32.611565149294194 23.137721752813935 17.8281002101189 8 25.477729715149955 34.17096789347468 21.24065082913587 19.110651562239493 9 26.377859598572396 15.053310396346815 20.724563214095358 37.844266790985436 10-11 24.465381547889436 25.69157989299272 28.920182399818355 20.922856159299492 12-13 25.69032976713367 24.084350589118934 28.34378019548455 21.881539448262853 14-15 23.101826468356986 25.121491742885333 26.24507193708031 25.531609851677366 16-17 22.198583739154685 27.760998030915086 27.136188384550074 22.904229845380154 18-19 22.30180342950537 26.735698695167653 29.079601128773692 21.88289674655329 20-21 23.232177035447073 25.910653369731822 28.884413841371465 21.97275575344964 22-23 23.10242178504961 25.732496939074185 28.666235228853136 22.498846047023072 24-25 22.774074913529127 26.012326543533522 28.737815714278703 22.475782828658648 26-27 22.549784255208536 26.13244859814706 28.848054521397202 22.469712625247197 28-29 22.50389259070204 26.000186778093372 29.011968597926263 22.483952033278324 30-31 22.853691835003055 25.90081462396323 28.74722952512847 22.498264015905246 32-33 22.64633932355643 26.121947920494637 28.557112493553284 22.67460026239565 34-35 22.849920034722775 26.154661525194285 28.56135473216869 22.434063707914248 36-37 22.873431454786573 26.020214491259324 28.467605360693348 22.63874869326075 38-39 22.64410202606131 26.15300091545036 28.56426887090376 22.63862818758457 40-41 22.849206681020966 26.013572698411547 28.52557620942858 22.61164441113891 42-43 22.945333173263897 26.12953115710791 27.99034982599638 22.934785843631815 44-45 22.9506254907996 26.254421924936665 27.727976752248964 23.066975832014773 46-47 23.157813462345246 26.32782295376577 27.36702341316243 23.147340170726554 48-49 23.14128687227597 26.506366698470657 27.14204096874161 23.210305460511762 50-51 23.089940753300386 26.62854738973023 26.969211383945712 23.312300473023676 52-53 23.244048505720947 26.51577890089831 26.875599304168098 23.364573289212647 54-55 23.312593778927774 26.469864948260252 26.826779480363903 23.39076179244807 56-57 23.206309990076893 26.492001642820245 26.862857602368116 23.438830764734746 58-59 23.12149114487916 26.446991371467576 26.972958826134075 23.45855865751919 60-61 23.278076718219904 26.511166429540655 26.908619689600844 23.302137162638598 62-63 23.190762201854163 26.54917749144302 26.890391913465518 23.369668393237298 64-65 23.25931956888619 26.447901031796867 26.77315654822503 23.519622851091913 66-67 23.277185681058686 26.555522371445228 26.618721245836536 23.548570701659553 68-69 23.194088243601723 26.50450482707748 26.733496328072732 23.567910601248062 70-71 23.23004489642907 26.32738682173435 26.80589001352045 23.63667826831613 72-73 23.324375699760612 26.3781947997846 26.63425986092468 23.663169639530103 74-75 23.211996620775544 26.50980542256052 26.606677843492253 23.671520113171685 76-77 23.370751548558484 26.37166984247039 26.60786061378061 23.649717995190514 78-79 23.31615633904011 26.401956235561556 26.553619049826814 23.72826837557152 80-81 23.256538949291176 26.48272724983559 26.56650378415655 23.694230016716684 82-83 23.417749579809342 26.416941232108044 26.59145173288507 23.573857455197547 84-85 23.394104391243317 26.459394451217165 26.470316748212618 23.676184409326897 86-87 23.31232974125986 26.532286410279415 26.568225199252588 23.58715864920814 88-89 23.36393388944896 26.352365613992152 26.572517431781577 23.711183064777313 90-91 23.341164244377783 26.394995105592372 26.61825123863556 23.645589411394283 92-93 23.365139367000467 26.42112766579428 26.603572147806137 23.610160819399113 94-95 23.248485474892043 26.390411456569996 26.648605660749467 23.712497407788494 96-97 23.397679060814987 26.52143248833596 26.58658909802022 23.49429935282883 98-99 24.491122014191415 28.455299668559437 26.774150539396246 20.2794277778529 100 31.96783495472243 39.964562133092066 28.067602912185507 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 14609.0 1 13041.0 2 12208.0 3 12743.5 4 15168.5 5 24100.0 6 31908.0 7 36995.5 8 39984.5 9 37887.0 10 31380.5 11 24241.5 12 24566.0 13 34083.0 14 59524.0 15 96035.0 16 125293.0 17 140795.0 18 144099.0 19 135782.5 20 118849.5 21 100124.0 22 86843.5 23 85000.0 24 94885.0 25 113768.0 26 139669.5 27 169019.5 28 199650.5 29 232000.5 30 265262.0 31 299997.5 32 340940.0 33 386934.0 34 427683.0 35 467744.5 36 513685.5 37 554428.5 38 591543.5 39 620847.5 40 644487.0 41 667580.5 42 687960.5 43 716806.0 44 748643.5 45 776164.0 46 798050.0 47 818493.0 48 834867.0 49 839653.0 50 840127.5 51 837168.5 52 823700.5 53 800454.5 54 770262.0 55 733308.5 56 690948.5 57 641069.0 58 586238.5 59 521589.0 60 449357.5 61 376608.5 62 309288.0 63 250144.0 64 197483.0 65 153756.5 66 116737.5 67 89849.0 68 69728.5 69 53415.0 70 40988.5 71 31129.0 72 23447.0 73 17491.5 74 12662.0 75 9033.0 76 6507.5 77 4475.0 78 3120.0 79 2232.0 80 1570.0 81 1089.0 82 788.0 83 571.5 84 407.5 85 279.5 86 190.0 87 132.5 88 80.5 89 48.5 90 34.5 91 26.0 92 20.5 93 12.5 94 6.0 95 3.5 96 2.5 97 3.0 98 2.5 99 2.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0030396979678074853 4 5.418356448854698E-6 5 0.11168858148024188 6 4.1179509011295704E-4 7 2.167342579541879E-4 8 0.0 9 0.0 10-11 0.012806285466868076 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 9.211872553959966E-5 22-23 1.354961334552365E-5 24-25 4.2831000069424175E-4 26-27 0.0 28-29 2.7427356338494634E-4 30-31 0.0 32-33 5.197034058133586E-5 34-35 8.478028459805653E-4 36-37 9.578683148739152E-4 38-39 2.2737431204182496E-4 40-41 0.0023573610530212537 42-43 0.001334213645963361 44-45 0.001995071618105319 46-47 5.266371743898306E-4 48-49 0.0053104695680591145 50-51 0.0019403329801743101 52-53 4.322652618481032E-4 54-55 5.167898075941128E-4 56-57 8.952690879922577E-5 58-59 0.00391991522339639 60-61 0.002903365145042181 62-63 0.002970389356634358 64-65 7.753712301383072E-4 66-67 0.0010698149175473691 68-69 0.004947501761607827 70-71 0.0027608676117077415 72-73 0.0 74-75 0.0015691157545124268 76-77 0.0015061105589534171 78-79 1.4417317839370667E-4 80-81 7.72418659873708E-6 82-83 9.433203603200781E-5 84-85 3.9993748177284925E-5 86-87 0.0012176279955074007 88-89 1.0792761543896236E-4 90-91 0.0013043113885906547 92-93 0.0016079476877560966 94-95 6.095386706571131E-4 96-97 1.4528663372958146E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 783.0 20-21 3054.0 22-23 5727.0 24-25 8364.0 26-27 17515.0 28-29 37573.0 30-31 79162.0 32-33 106362.0 34-35 142695.0 36-37 191315.0 38-39 207262.0 40-41 209530.0 42-43 253597.0 44-45 311180.0 46-47 293509.0 48-49 247388.0 50-51 212894.0 52-53 205197.0 54-55 226463.0 56-57 231466.0 58-59 221317.0 60-61 210612.0 62-63 209860.0 64-65 228640.0 66-67 235807.0 68-69 230919.0 70-71 219690.0 72-73 214923.0 74-75 223325.0 76-77 232387.0 78-79 233260.0 80-81 227942.0 82-83 219091.0 84-85 222094.0 86-87 231264.0 88-89 236376.0 90-91 239862.0 92-93 242253.0 94-95 274949.0 96-97 590344.0 98-99 3552142.0 100-101 6967688.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.19124061354552 #Duplication Level Percentage of deduplicated Percentage of total 1 89.59818914162872 76.32980889702455 2 7.40696594612666 12.620172362656282 3 1.724874372691631 4.408325631363334 4 0.6063205394374528 2.0661279585660304 5 0.26163825012317243 1.1144643559975096 6 0.13633404267555552 0.6968679740034381 7 0.07929870704935517 0.47288886628092713 8 0.0493400336220708 0.3362670940942607 9 0.030722058614680966 0.23555252588280617 >10 0.10316569230128965 1.3952517995375437 >50 0.0021549274596295302 0.12237601251726105 >100 9.30538411799876E-4 0.13950933598406232 >500 3.2921472195976166E-5 0.017677433336979957 >1k 3.282838587480466E-5 0.04470975275503494 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.0836712897709396E-5 2 0.0 5.418356448854698E-6 0.0 0.0 1.0836712897709396E-5 3 5.418356448854698E-6 5.418356448854698E-6 0.0 5.418356448854698E-6 1.0836712897709396E-5 4 5.418356448854698E-6 3.792849514198288E-5 0.0 5.418356448854698E-6 1.0836712897709396E-5 5 1.0836712897709396E-5 3.792849514198288E-5 0.0 5.418356448854698E-6 1.0836712897709396E-5 6 1.6255069346564094E-5 3.792849514198288E-5 0.0 1.6255069346564094E-5 1.0836712897709396E-5 7 1.6255069346564094E-5 3.792849514198288E-5 0.0 3.251013869312819E-5 1.0836712897709396E-5 8 1.6255069346564094E-5 3.792849514198288E-5 0.0 3.251013869312819E-5 1.0836712897709396E-5 9 2.167342579541879E-5 7.043863383511107E-5 0.0 3.251013869312819E-5 1.0836712897709396E-5 10-11 3.251013869312819E-5 7.043863383511107E-5 0.0 4.605602981526493E-5 1.0836712897709396E-5 12-13 3.251013869312819E-5 7.585699028396576E-5 0.0 5.4183564488546976E-5 1.0836712897709396E-5 14-15 4.605602981526493E-5 9.211205963052986E-5 0.0 5.960192093740168E-5 1.0836712897709396E-5 16-17 6.772945561068372E-5 9.211205963052986E-5 0.0 7.314781205953842E-5 1.0836712897709396E-5 18-19 8.669370318167515E-5 1.0294877252823925E-4 0.0 8.127534673282046E-5 1.3545891122136744E-5 20-21 1.0836712897709395E-4 1.1378548542594865E-4 0.0 8.398452495724781E-5 1.6255069346564094E-5 22-23 1.0836712897709395E-4 1.1378548542594865E-4 0.0 1.0836712897709395E-4 1.896424757099144E-5 24-25 1.3545891122136743E-4 1.3004055477251275E-4 0.0 1.8151494103663238E-4 2.167342579541879E-5 26-27 1.5171398056793153E-4 1.4087726767022214E-4 0.0 3.982491989908203E-4 2.167342579541879E-5 28-29 1.5171398056793153E-4 1.435864458946495E-4 0.0 0.001622797756431982 2.167342579541879E-5 30-31 1.5171398056793153E-4 1.4629562411907685E-4 0.0 0.0049875971111707496 2.167342579541879E-5 32-33 1.5171398056793153E-4 1.5171398056793153E-4 0.0 0.01121057949268037 2.7091782244273488E-5 34-35 1.6255069346564094E-4 1.8693329748548706E-4 0.0 0.020424494633957783 2.7091782244273488E-5 36-37 1.7338740636335033E-4 2.221526144030426E-4 0.0 0.035837009552724966 2.7091782244273488E-5 38-39 1.7338740636335033E-4 2.275709708518973E-4 0.0 0.06663494760801507 2.7091782244273488E-5 40-41 1.7338740636335033E-4 2.438260401984614E-4 0.0 0.09725137072226854 2.7091782244273488E-5 42-43 1.7338740636335033E-4 2.438260401984614E-4 0.0 0.11767315617800189 2.7091782244273488E-5 44-45 1.7609658458777767E-4 2.600811095450255E-4 0.0 0.14387090960821436 2.980096046870084E-5 46-47 1.78805762812205E-4 2.763361788915896E-4 0.0 0.17048587648498864 3.5219316917555535E-5 48-49 1.78805762812205E-4 2.763361788915896E-4 0.0 0.19357078413533407 4.8765208039692276E-5 50-51 1.78805762812205E-4 3.0884631758471774E-4 0.0 0.21370810587750255 4.8765208039692276E-5 52-53 1.8422411926105972E-4 3.1426467403357247E-4 0.0 0.2596882787024835 6.231109916182902E-5 54-55 1.8964247570991442E-4 3.1426467403357247E-4 0.0 0.31404523059739387 7.043863383511107E-5 56-57 1.8964247570991442E-4 3.1426467403357247E-4 0.0 0.36862704428493165 7.043863383511107E-5 58-59 1.950608321587691E-4 3.169738522579998E-4 0.0 0.4031988676068491 7.043863383511107E-5 60-61 1.950608321587691E-4 3.1968303048242715E-4 0.0 0.4189229380214254 7.585699028396576E-5 62-63 1.950608321587691E-4 3.223922087068545E-4 0.0 0.4355464556065116 8.669370318167517E-5 64-65 1.950608321587691E-4 3.4677481272670066E-4 0.0 0.44596866423588355 8.669370318167517E-5 66-67 1.950608321587691E-4 3.49483990951128E-4 0.0 0.45562959378419154 8.669370318167517E-5 68-69 1.950608321587691E-4 3.603207038488374E-4 0.0 0.46502231468828115 8.940288140610252E-5 70-71 2.004791886076238E-4 3.657390602976921E-4 0.0 0.4726811615287373 9.211205963052986E-5 72-73 2.004791886076238E-4 3.738665949709741E-4 0.0 0.478302706344424 1.0836712897709395E-4 74-75 2.004791886076238E-4 3.9554002076639294E-4 0.0 0.48283787069211537 1.0836712897709395E-4 76-77 2.004791886076238E-4 4.172134465618117E-4 0.0 0.4873621983269091 1.0836712897709395E-4 78-79 2.0589754505647852E-4 4.172134465618117E-4 0.0 0.490347712730228 1.0836712897709395E-4 80-81 2.0589754505647852E-4 4.172134465618117E-4 0.0 0.49121464976204476 1.0836712897709395E-4 82-83 2.0589754505647852E-4 4.172134465618117E-4 0.0 0.4917483578722569 1.0836712897709395E-4 84-85 2.0589754505647852E-4 4.172134465618117E-4 0.0 0.4919109085657226 1.0836712897709395E-4 86-87 2.0589754505647852E-4 4.226318030106664E-4 0.0 0.4919732196648844 1.1107630720152129E-4 88 2.0589754505647852E-4 4.334685159083758E-4 0.0 0.49198134719955766 1.1378548542594865E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 30780 0.0 53.836987 1 GTATCAA 55280 0.0 34.39412 1 TCAACGC 70790 0.0 26.465107 4 ATCAACG 71170 0.0 26.286095 3 TATCAAC 72205 0.0 26.041077 2 CAACGCA 72125 0.0 25.96609 5 AACGCAG 74295 0.0 25.301598 6 ACGCAGA 83930 0.0 22.316557 7 CGCAGAG 85755 0.0 21.832329 8 GTGGTAT 11025 0.0 21.826452 1 TGGTATC 11130 0.0 20.516363 2 GTACATG 61160 0.0 19.556038 1 GAGTACT 57670 0.0 19.320929 12-13 GCAGAGT 96610 0.0 19.284979 9 TACATGG 62710 0.0 18.864056 2 CAGAGTA 93475 0.0 18.482859 10-11 ACATGGG 63610 0.0 18.104803 3 GTACTTT 63210 0.0 17.56613 14-15 AGAGTAC 88185 0.0 17.456171 10-11 ACCGAAC 3680 0.0 16.574743 8 >>END_MODULE