##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140403_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7932645 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.918075118702525 34.0 31.0 34.0 31.0 34.0 2 33.028392421443286 34.0 33.0 34.0 31.0 34.0 3 33.090898306932935 34.0 33.0 34.0 31.0 34.0 4 36.46326149726857 37.0 37.0 37.0 35.0 37.0 5 36.42250951605675 37.0 37.0 37.0 35.0 37.0 6 36.45387938071097 37.0 37.0 37.0 35.0 37.0 7 36.414119754508114 37.0 37.0 37.0 35.0 37.0 8 36.397767957598 37.0 37.0 37.0 35.0 37.0 9 38.18379430820363 39.0 39.0 39.0 37.0 39.0 10-11 38.13618307638877 39.0 39.0 39.0 37.0 39.0 12-13 38.10468576370177 39.0 38.0 39.0 37.0 39.0 14-15 39.55852801934286 41.0 40.0 41.0 37.0 41.0 16-17 39.53762244497264 41.0 39.0 41.0 37.0 41.0 18-19 39.54790873661938 41.0 39.5 41.0 37.0 41.0 20-21 39.52439447471107 41.0 39.5 41.0 37.0 41.0 22-23 39.4430502588798 41.0 39.0 41.0 36.5 41.0 24-25 39.287932464614805 40.5 39.0 41.0 36.0 41.0 26-27 39.29204579798484 40.5 39.0 41.0 36.0 41.0 28-29 39.220725471247874 41.0 39.0 41.0 36.0 41.0 30-31 39.13119635113581 40.5 39.0 41.0 36.0 41.0 32-33 38.92977267524405 40.0 39.0 41.0 35.0 41.0 34-35 38.85005123078727 40.0 38.0 41.0 35.0 41.0 36-37 39.03888679454572 40.5 39.0 41.0 35.0 41.0 38-39 39.11167846434519 41.0 39.0 41.0 35.0 41.0 40-41 39.08422847553638 41.0 39.0 41.0 35.0 41.0 42-43 38.93960941129221 40.0 39.0 41.0 35.0 41.0 44-45 38.95930223707494 40.0 39.0 41.0 35.0 41.0 46-47 38.9115155064748 40.0 38.5 41.0 35.0 41.0 48-49 38.84592592322309 40.0 38.0 41.0 35.0 41.0 50-51 38.77517430636399 40.0 38.0 41.0 35.0 41.0 52-53 38.65978052812751 40.0 38.0 41.0 35.0 41.0 54-55 38.52290420695785 40.0 38.0 41.0 34.5 41.0 56-57 38.37755978576845 40.0 37.5 41.0 34.0 41.0 58-59 38.21806807499263 40.0 37.0 41.0 34.0 41.0 60-61 38.03506920024115 40.0 37.0 41.0 34.0 41.0 62-63 37.8047791580893 39.0 36.0 41.0 34.0 41.0 64-65 37.52999582378874 39.0 35.5 41.0 33.0 41.0 66-67 37.206291208322114 38.5 35.0 40.0 33.0 41.0 68-69 36.87384698157975 38.0 35.0 40.0 32.5 41.0 70-71 36.51283642600268 37.0 35.0 40.0 32.0 41.0 72-73 36.16846442869466 37.0 35.0 39.0 32.0 41.0 74-75 35.82457628951248 36.0 35.0 39.0 32.0 40.5 76-77 34.96405700741154 35.0 34.0 38.0 30.5 39.0 78-79 35.19345954374466 35.0 34.0 37.0 31.0 39.0 80-81 34.97716974059556 35.0 34.0 37.0 31.0 39.0 82-83 34.70914181139257 35.0 34.0 36.5 31.0 39.0 84-85 34.44578771162266 35.0 34.0 36.0 31.0 37.0 86-87 34.22824248550119 35.0 34.0 36.0 31.0 37.0 88-89 34.02929608182181 35.0 34.0 35.0 31.0 37.0 90-91 33.8316600779375 35.0 34.0 35.0 31.0 36.0 92-93 33.70053874930356 35.0 34.0 35.0 30.0 36.0 94-95 33.62700142719761 35.0 34.0 35.0 30.0 36.0 96-97 33.60182663393892 35.0 34.0 35.0 30.0 35.5 98-99 33.632331728203766 35.0 34.0 35.0 31.0 35.0 100-101 32.228703794718506 33.5 31.5 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 3 1.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 1.0 19 3.0 20 29.0 21 135.0 22 638.0 23 2260.0 24 5752.0 25 12151.0 26 21566.0 27 34561.0 28 50870.0 29 69384.0 30 89967.0 31 116186.0 32 149531.0 33 198052.0 34 288328.0 35 433996.0 36 781115.0 37 1746553.0 38 2575890.0 39 1282667.0 40 73009.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.13048411097233 21.049942490801303 15.665873824666782 24.153699573559585 2 13.413892625607984 21.365904073334857 41.925105557060334 23.295097743996827 3 17.105961139816685 26.160546218889948 30.884784442614592 25.84870819867878 4 11.784960978962374 18.566130031802764 39.09029574502524 30.55861324420962 5 13.082145120844954 37.79616228838707 35.55408511966502 13.567607471102953 6 29.73125984224175 38.27264906883506 18.691485461846014 13.304605627077176 7 26.392894668669364 32.82399858306855 22.787573107800878 17.995533640461208 8 24.284666529006778 37.19495791666635 20.758480769342285 17.761894784984584 9 25.12400738623643 17.35086085355203 21.34289775649624 36.18223400371531 10-11 24.036922619999082 27.25997788379259 28.535655955315782 20.167443540892542 12-13 24.900247634962565 24.631157026585335 28.935894513859438 21.532700824592656 14-15 21.926899933280662 26.11626309922524 26.8440995615181 25.112737405976 16-17 21.358539325665642 29.268361248071656 27.49585494105838 21.877244485204322 18-19 21.308915330820636 28.28555471003396 29.495170242407813 20.910359716737588 20-21 22.167603471356493 27.35432925544796 29.527078670793337 20.950988602402205 22-23 21.842508948892426 27.23480248454096 29.38455385078949 21.538134715777126 24-25 21.63610160533637 27.390759876280868 29.46560050678972 21.50753801159304 26-27 21.56539608663908 27.528657177009467 29.369935672092666 21.53601106425878 28-29 21.49034369326125 27.639807133332784 29.389637371935358 21.48021180147061 30-31 21.784896993281453 27.5042463642545 29.28005454805977 21.430802094404275 32-33 21.621222394128708 27.650277587748217 29.19729630377499 21.531203714348084 34-35 21.69608489865504 27.66896421240227 29.231874276507053 21.403076612435637 36-37 21.664753872205786 27.615419517667316 29.21230068223888 21.50752592788802 38-39 21.543603372603133 27.77108671514647 29.20061893254896 21.484690979701433 40-41 21.811973338219097 27.648402646019804 29.009621778887457 21.530002236873642 42-43 21.735874813612657 27.734501648278435 28.81358592967406 21.716037608434846 44-45 21.831281730810616 27.865285085254975 28.618916570199026 21.684516613735376 46-47 21.861760944780915 27.86365417817195 28.356799544091967 21.91778533295517 48-49 21.78774777390302 28.03023017070637 28.286922557931575 21.895099497459036 50-51 21.84175306961421 28.11614550515965 28.121359886450126 21.920741538776014 52-53 22.01159240823015 28.04948438704116 27.985673213967367 21.95324999076132 54-55 21.97038444215652 27.92674741943858 28.06494517946562 22.03792295893928 56-57 21.932262218914843 28.089987066444426 28.000674137557013 21.977076577083718 58-59 21.939648466265858 28.120339741552968 27.99696665751434 21.943045134666832 60-61 21.994570894421926 28.061820185245534 28.044968399939368 21.89864052039317 62-63 21.939884712795227 28.139797189182264 28.00544113559218 21.914876962430334 64-65 21.89348852633661 28.08935669178476 28.01852815583014 21.998626626048488 66-67 21.972997822294424 28.133580322821565 27.84754575267413 22.045876102209878 68-69 21.964604821001878 28.1202480176261 27.867411926443385 22.047735234928638 70-71 21.916688630060236 27.91940772727458 27.923858587163252 22.24004505550193 72-73 21.99183234769521 27.910768075714852 27.930821792968153 22.166577783621786 74-75 21.836609493452084 28.001382832582006 27.918785896084618 22.243221777881296 76-77 21.991480214694825 27.98003761930757 27.860464043141462 22.168018122856136 78-79 21.983644874956536 27.98874889910471 27.783070080624046 22.24453614531471 80-81 21.980291956967886 27.96179940539266 27.76922226130585 22.2886863763336 82-83 22.004824437666045 27.943199555187803 27.8656296224871 22.186346384659053 84-85 22.13463601348685 27.925568988719824 27.862230453021965 22.07756454477136 86-87 21.94513907469758 27.94080468653758 27.92158084332254 22.1924753954423 88-89 22.029573226322924 27.856516356650374 27.942988613877805 22.1709218031489 90-91 22.02290741819497 27.84991663820983 27.952546049856373 22.174629893738825 92-93 22.061849456024376 27.770936025795113 28.03900382389632 22.128210694284192 94-95 21.9102244854799 27.871914740955056 28.011821993413477 22.206038780151566 96-97 21.90294434213413 27.896898115215023 28.08414294619894 22.1160145964519 98-99 22.09260349821233 28.412845779944305 28.100230950754256 21.3943197710891 100-101 19.920551593085897 32.19023600235788 26.28081574631035 21.608396658245884 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1844.0 1 1597.5 2 1967.0 3 2779.5 4 3735.5 5 5598.5 6 7397.0 7 9612.5 8 11559.0 9 11879.0 10 10750.0 11 9681.5 12 10942.0 13 15252.0 14 25143.0 15 38386.0 16 48859.0 17 53951.5 18 53692.0 19 50153.5 20 45010.5 21 39567.5 22 36382.5 23 37902.5 24 44224.0 25 55176.0 26 69296.0 27 84595.5 28 101641.0 29 119346.5 30 136140.0 31 154101.0 32 173866.0 33 193194.0 34 211716.5 35 228885.0 36 247722.0 37 264268.5 38 275148.5 39 285315.5 40 296662.5 41 307538.0 42 312948.5 43 316913.5 44 322805.0 45 326205.5 46 326259.0 47 324796.0 48 321529.0 49 316885.5 50 309934.5 51 297638.5 52 282291.5 53 266379.5 54 249572.0 55 230962.5 56 211404.0 57 190989.0 58 168656.5 59 145741.0 60 122178.5 61 98807.0 62 77314.5 63 58610.0 64 43136.0 65 31817.0 66 23628.5 67 17403.0 68 12926.5 69 9078.5 70 6133.0 71 4156.0 72 2783.5 73 1822.0 74 1147.0 75 722.5 76 471.5 77 313.5 78 210.0 79 145.0 80 102.0 81 68.5 82 47.0 83 31.0 84 19.5 85 12.5 86 9.0 87 7.0 88 5.5 89 3.5 90 4.0 91 4.0 92 3.0 93 3.0 94 2.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.2606135784470374E-5 2 0.02946053932830727 3 1.2606135784470374E-5 4 1.2606135784470374E-5 5 1.2606135784470374E-5 6 1.2606135784470374E-5 7 1.2606135784470375E-4 8 6.429129250079891E-4 9 6.681251965769299E-4 10-11 1.2606135784470374E-5 12-13 1.2606135784470374E-5 14-15 0.002048497064976436 16-17 9.454601838352781E-5 18-19 6.303067892235187E-6 20-21 1.1345772502133635E-4 22-23 0.00194780586288304 24-25 6.998067398576252E-4 26-27 0.014592620573577013 28-29 0.3137844151742734 30-31 0.3144621720616219 32-33 0.33166896750690567 34-35 0.21531810599999787 36-37 0.07492807796137545 38-39 0.066378127363272 40-41 0.02684043323783697 42-43 0.011175828868028639 44-45 0.014754133740728799 46-47 0.011059697274626478 48-49 0.007757354742032967 50-51 0.008123292361659458 52-53 0.0039119023350943655 54-55 0.0021190510112813234 56-57 0.004304134983164791 58-59 0.005077450137744859 60-61 0.004336514652539204 62-63 0.002564651527446725 64-65 0.0011542609578666424 66-67 0.008027894791724699 68-69 0.011803341628339434 70-71 0.012056594731893475 72-73 0.010388991425560382 74-75 0.010486342815049478 76-77 0.009937343221798664 78-79 0.0024794493964349434 80-81 0.002078045291644142 82-83 0.0016070435565703938 84-85 0.0 86-87 0.002699111662720262 88-89 0.0 90-91 0.009327615502352352 92-93 0.019586046265417392 94-95 0.0014297128376312318 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 101.0 20-21 377.0 22-23 831.0 24-25 2096.0 26-27 2793.0 28-29 5032.0 30-31 14326.0 32-33 19038.0 34-35 27976.0 36-37 39825.0 38-39 47429.0 40-41 50303.0 42-43 59789.0 44-45 72019.0 46-47 71795.0 48-49 63129.0 50-51 55405.0 52-53 48815.0 54-55 53913.0 56-57 55501.0 58-59 56120.0 60-61 56581.0 62-63 54418.0 64-65 59069.0 66-67 61804.0 68-69 62713.0 70-71 61854.0 72-73 58651.0 74-75 58960.0 76-77 61387.0 78-79 65189.0 80-81 66588.0 82-83 64501.0 84-85 65007.0 86-87 69314.0 88-89 76174.0 90-91 83494.0 92-93 86162.0 94-95 98221.0 96-97 156429.0 98-99 705753.0 100-101 5113763.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.90588241502785 #Duplication Level Percentage of deduplicated Percentage of total 1 90.23893314057784 77.5205517963204 2 6.9666738239464605 11.969565246875941 3 1.5602876044058527 4.021136504331439 4 0.5599687081188006 1.9241842398299493 5 0.2612983635234649 1.1223533246042992 6 0.13614432626251444 0.7017359090028452 7 0.07634284367815641 0.45908095465711896 8 0.05445807445677348 0.3742615152665932 9 0.03582631152282563 0.27699218145396143 >10 0.10770866525057396 1.4163759842438566 >50 0.00182954707935132 0.09989877643965386 >100 4.6003719948435254E-4 0.07189340517099885 >500 6.855397793099613E-5 0.04197016180294038 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.2606135784470376E-5 2 0.0 1.2606135784470376E-5 0.0 0.0 1.2606135784470376E-5 3 0.0 1.2606135784470376E-5 0.0 2.521227156894075E-5 1.2606135784470376E-5 4 0.0 7.563681470682225E-5 0.0 2.521227156894075E-5 1.2606135784470376E-5 5 0.0 1.1345522206023338E-4 0.0 2.521227156894075E-5 1.2606135784470376E-5 6 8.824295049129263E-5 1.1345522206023338E-4 0.0 2.521227156894075E-5 1.2606135784470376E-5 7 8.824295049129263E-5 1.1345522206023338E-4 0.0 2.521227156894075E-5 1.2606135784470376E-5 8 1.00849086275763E-4 1.1345522206023338E-4 0.0 6.303067892235188E-5 1.2606135784470376E-5 9 1.00849086275763E-4 2.2691044412046676E-4 0.0 7.563681470682225E-5 3.7818407353411124E-5 10-11 1.00849086275763E-4 2.2691044412046676E-4 0.0 8.824295049129262E-5 3.7818407353411124E-5 12-13 1.00849086275763E-4 2.3321351201270195E-4 0.0 1.00849086275763E-4 3.7818407353411124E-5 14-15 1.00849086275763E-4 3.5297180196517053E-4 0.0 1.1345522206023338E-4 5.04245431378815E-5 16-17 2.01698172551526E-4 3.5297180196517053E-4 0.0 1.2606135784470375E-4 6.303067892235188E-5 18-19 2.01698172551526E-4 3.592748698574057E-4 0.0 1.7648590098258524E-4 6.933374681458707E-5 20-21 2.01698172551526E-4 3.6557793774964086E-4 0.0 2.4581964779717233E-4 9.454601838352781E-5 22-23 2.1430430833599637E-4 4.475178203486983E-4 0.0 6.113975855468131E-4 1.071521541679982E-4 24-25 2.1430430833599637E-4 4.7903315980987423E-4 0.0 0.001481220954675269 1.1345522206023338E-4 26-27 2.1430430833599637E-4 5.04245431378815E-4 0.0 0.004103297197845107 1.1345522206023338E-4 28-29 2.1430430833599637E-4 5.105484992710502E-4 0.0 0.01897853742352015 1.1345522206023338E-4 30-31 2.1430430833599637E-4 5.294577029477558E-4 0.0 0.02618294402434497 1.1345522206023338E-4 32-33 2.3321351201270195E-4 5.420638387322261E-4 0.0 0.029214719680510093 1.1345522206023338E-4 34-35 2.647288514738779E-4 6.050945176545781E-4 0.0 0.03288310519379097 1.1345522206023338E-4 36-37 2.647288514738779E-4 6.681251965769299E-4 0.0 0.03854956322891041 1.1345522206023338E-4 38-39 2.647288514738779E-4 7.185497397148114E-4 0.0 0.046857006710876385 1.1345522206023338E-4 40-41 2.647288514738779E-4 7.815804186371633E-4 0.0 0.05970896214314393 1.1345522206023338E-4 42-43 2.7733498725834827E-4 8.193988259905744E-4 0.0 0.06724112827436499 1.1345522206023338E-4 44-45 2.899411230428186E-4 9.328540480508078E-4 0.0 0.07711173259360529 1.1975828995246856E-4 46-47 3.088503267195242E-4 0.00100849086275763 0.0 0.08990696041484272 1.2606135784470375E-4 48-49 3.151533946117594E-4 0.0010210969985421003 0.0 0.10120205807772817 1.3866749362917414E-4 50-51 3.529718019651705E-4 0.0011282491527100985 0.0 0.11429353008990066 1.3866749362917414E-4 52-53 3.7818407353411125E-4 0.0011345522206023338 0.0 0.1272148192689828 1.449705615214093E-4 54-55 3.844871414263464E-4 0.0011471583563868043 0.0 0.17567910829237915 1.575766973058797E-4 56-57 3.9079020931858164E-4 0.0011849767637402153 0.0 0.19869160916692982 1.6387976519811488E-4 58-59 3.9079020931858164E-4 0.0011975828995246856 0.0 0.22425685253783573 1.6387976519811488E-4 60-61 4.03396345103052E-4 0.0012669166463392728 0.0 0.23862154426423973 1.6387976519811488E-4 62-63 4.916392955943447E-4 0.0012984319858004487 0.0 0.24677771411679206 1.8909203676705563E-4 64-65 4.916392955943447E-4 0.0014370994794296228 0.0 0.2545872152352715 1.8909203676705563E-4 66-67 4.916392955943447E-4 0.0014623117509985637 0.0 0.2601654303198996 1.8909203676705563E-4 68-69 4.916392955943447E-4 0.0015001301583519747 0.0 0.2651700662263343 1.8909203676705563E-4 70-71 4.979423634865798E-4 0.0015253424299209153 0.0 0.2697902149913427 2.1430430833599637E-4 72-73 5.168515671632853E-4 0.0015253424299209153 0.0 0.27375484469555866 2.3951657990493714E-4 74-75 5.168515671632853E-4 0.001544251633597621 0.0 0.2767866203517238 2.3951657990493714E-4 76-77 5.357607708399909E-4 0.0015946761767355025 0.0 0.27981209293999665 2.3951657990493714E-4 78-79 5.420638387322261E-4 0.0016009792446277378 0.0 0.2824782906584122 2.3951657990493714E-4 80-81 5.420638387322261E-4 0.0016009792446277378 0.0 0.28372629810107475 2.3951657990493714E-4 82-83 5.420638387322261E-4 0.0016072823125199728 0.0 0.2840855729709322 2.647288514738779E-4 84-85 5.420638387322261E-4 0.0016577068556578544 0.0 0.28435660489029824 2.647288514738779E-4 86-87 5.483669066244613E-4 0.0016892221951190303 0.0 0.284482666248143 2.8363805515058344E-4 88-89 5.546699745166965E-4 0.0017774651456103228 0.0 0.2845204846554964 2.8994112304281866E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10885 0.0 54.09164 1 GTATCAA 20725 0.0 37.761604 1 TCAACGC 25605 0.0 29.935701 4 ATCAACG 25740 0.0 29.845615 3 CAACGCA 26260 0.0 29.205418 5 TATCAAC 26565 0.0 29.168688 2 AACGCAG 27060 0.0 28.37382 6 ACGCAGA 31105 0.0 24.683992 7 CGCAGAG 31350 0.0 24.491085 8 TGGTATC 4705 0.0 22.703226 2 GCAGAGT 36190 0.0 21.216618 9 GTGGTAT 5360 0.0 20.73218 1 GAGTACT 22010 0.0 20.172142 12-13 TACATGG 23835 0.0 20.004515 2 GTACATG 24650 0.0 19.902006 1 AGAGTAC 33015 0.0 19.3243 10-11 ACATGGG 24535 0.0 18.955355 3 CAGAGTA 35375 0.0 18.94203 10-11 GTACTTT 24250 0.0 18.220428 14-15 AGTACTT 24135 0.0 17.602047 12-13 >>END_MODULE