##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140402_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8102512 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.646894938261124 32.0 18.0 33.0 18.0 33.0 2 29.764272240510103 31.0 28.0 33.0 25.0 33.0 3 31.013848174492058 33.0 31.0 33.0 27.0 33.0 4 30.841726368316394 33.0 31.0 33.0 27.0 34.0 5 31.268223237435503 33.0 32.0 33.0 28.0 34.0 6 34.114467834172906 37.0 33.0 38.0 26.0 38.0 7 35.563674820845684 38.0 36.0 38.0 30.0 38.0 8 35.34299214860774 38.0 35.0 38.0 29.0 38.0 9 36.03647189908512 38.0 37.0 38.0 31.0 38.0 10-11 36.26292148657108 38.0 37.0 38.0 33.0 38.0 12-13 36.364109488514174 38.0 37.0 38.0 33.0 38.0 14-15 36.35119441970589 38.0 37.0 38.0 33.0 38.0 16-17 36.381597275017924 38.0 37.0 38.0 33.0 38.0 18-19 36.34832660537867 38.0 37.0 38.0 33.0 38.0 20-21 36.39749891637467 38.0 37.0 38.0 33.5 38.0 22-23 36.44528737825319 38.0 37.5 38.0 34.0 38.0 24-25 36.44818719257576 38.0 38.0 38.0 34.0 38.0 26-27 36.39899290295471 38.0 38.0 38.0 33.5 38.0 28-29 36.37665731402714 38.0 37.5 38.0 33.0 38.0 30-31 36.37002449067795 38.0 37.0 38.0 33.0 38.0 32-33 36.347263728188466 38.0 37.0 38.0 33.0 38.0 34-35 36.32138841858203 38.0 37.0 38.0 33.0 38.0 36-37 36.279207173247215 38.0 37.0 38.0 33.0 38.0 38-39 36.27101106587815 38.0 37.0 38.0 33.0 38.0 40-41 36.25214817535078 38.0 37.0 38.0 33.0 38.0 42-43 36.20729465571044 38.0 37.0 38.0 33.0 38.0 44-45 36.14077829436502 38.0 37.0 38.0 33.0 38.0 46-47 36.07754446504127 38.0 37.0 38.0 33.0 38.0 48-49 36.019817429073306 38.0 37.0 38.0 31.5 38.0 50-51 35.98864973911501 38.0 37.0 38.0 31.0 38.0 52-53 35.955499771550635 38.0 37.0 38.0 31.0 38.0 54-55 35.86796505065972 38.0 37.0 38.0 31.0 38.0 56-57 35.89261442844979 38.0 37.0 38.0 31.0 38.0 58-59 35.871207550812734 38.0 37.0 38.0 31.0 38.0 60-61 35.8659453173162 38.0 37.0 38.0 31.0 38.0 62-63 35.84943866509893 38.0 37.0 38.0 31.0 38.0 64-65 35.852462799378394 38.0 37.0 38.0 31.0 38.0 66-67 35.8448262221528 38.0 37.0 38.0 31.0 38.0 68-69 35.822452556318424 38.0 37.0 38.0 31.0 38.0 70-71 35.80286662116868 38.0 37.0 38.0 31.0 38.0 72-73 35.79244306182281 38.0 37.0 38.0 31.0 38.0 74-75 35.781124508043206 38.0 37.0 38.0 31.0 38.0 76-77 35.789996506888215 38.0 37.0 38.0 31.0 38.0 78-79 35.75565923165915 38.0 37.0 38.0 31.0 38.0 80-81 35.74175276085306 38.0 37.0 38.0 31.0 38.0 82-83 35.65348717929046 38.0 36.5 38.0 29.5 38.0 84-85 35.67418165620373 38.0 36.0 38.0 29.0 38.0 86-87 35.673146396790344 38.0 36.0 38.0 29.0 38.0 88-89 35.68085438988034 38.0 36.0 38.0 29.5 38.0 90-91 35.659683128024774 38.0 36.0 38.0 29.0 38.0 92-93 35.62465730792241 38.0 36.0 38.0 29.0 38.0 94-95 35.63651443860098 38.0 36.0 38.0 29.0 38.0 96-97 35.65875454596789 38.0 36.0 38.0 30.5 38.0 98-99 35.66379436950439 38.0 36.0 38.0 31.0 38.0 100-101 35.06683751768597 38.0 35.0 38.0 28.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 6.0 19 21.0 20 118.0 21 746.0 22 3106.0 23 8659.0 24 19272.0 25 35264.0 26 56886.0 27 83981.0 28 116388.0 29 153384.0 30 194430.0 31 243630.0 32 302634.0 33 386488.0 34 518406.0 35 773421.0 36 1532985.0 37 3672687.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.821010570548985 18.448513251199135 13.85809734067657 20.872378837575308 2 14.964976293771612 20.32647406137751 43.24797050593692 21.460579138913957 3 18.50386178776496 27.314807843690964 29.796613416148638 24.384716952395433 4 12.477908085788703 19.510813436623113 38.41534575943855 29.59593271814963 5 14.158023265103568 37.50814187250658 34.75186412608552 13.581970736304335 6 29.147540910769397 38.323818588605604 18.86063235697769 13.668008143647302 7 26.174191411256164 33.95411200872026 22.398461119218336 17.473235460805242 8 24.119013955178346 36.96285793837763 20.736038403892522 18.182089702551504 9 25.493365514299764 17.730489013777458 21.30419553837131 35.47194993355147 10-11 23.943142571094 27.418422829858198 28.2961321131027 20.342302485945098 12-13 25.131557966220846 25.04153650127269 28.780290606172503 21.046614926333955 14-15 22.158794704654554 26.24948287642154 27.068790518298524 24.522931900625387 16-17 21.038553084241187 29.648589476079835 27.633940546893932 21.678916892785054 18-19 21.053310380780676 28.219402822235867 30.128551491191867 20.59873530579159 20-21 22.09675862649473 27.084548522358944 30.318171147818905 20.500521703327422 22-23 21.743697057619908 27.09987044223491 30.185120167558004 20.971312332587182 24-25 21.348156970419016 27.251379539400922 30.317295605286994 21.08316788489307 26-27 21.273221647462186 27.38225906355224 30.24495626616609 21.09956302281948 28-29 21.184279291273832 27.420806670677838 30.30135247676945 21.09356156127888 30-31 21.455036129820744 27.25675182479495 30.223618156640182 21.06459388874412 32-33 21.23072841044117 27.396224277902505 30.179689711359288 21.193357600297034 34-35 21.415108547672553 27.467715535859227 30.11819536046118 20.99898055600704 36-37 21.366935711498776 27.37343358239655 30.084456103504344 21.175174602600332 38-39 21.20391226877746 27.50047981992526 30.160059394146327 21.13554851715095 40-41 21.501619334342482 27.40585170369026 29.962632591661727 21.129896370305527 42-43 21.38897472579876 27.466444126529964 29.810376728659993 21.334204419011286 44-45 21.459460412569108 27.602517925068167 29.58670956179961 21.35131210056312 46-47 21.565805553238786 27.6331040852811 29.228064686078152 21.573025675401958 48-49 21.518072571166332 27.785061711258486 29.135327100628405 21.561538616946777 50-51 21.522399504488185 27.935949386140614 28.967581927009885 21.574069182361317 52-53 21.674863588262546 27.89869999213792 28.819586800186002 21.60684961941353 54-55 21.66003564741717 27.81368575982593 28.822339547805715 21.70393904495119 56-57 21.62410011648288 27.88146120613047 28.831953689492078 21.662484987894572 58-59 21.60557662160899 27.95819436260814 28.820922631536604 21.615306384246264 60-61 21.66267952500156 27.897179635959134 28.87333221930423 21.566808619735074 62-63 21.582531964942586 27.979802919461992 28.83902565981311 21.598639455782312 64-65 21.563961095091937 27.962371767587936 28.773119293350003 21.700547843970128 66-67 21.592268045038455 28.01144538351622 28.64250770207026 21.753778869375065 68-69 21.573361865373837 27.970363222025856 28.727702017509433 21.72857289509087 70-71 21.565636923436386 27.82142851774056 28.74720312301019 21.86573143581287 72-73 21.603317246970022 27.82280122403008 28.70326115594908 21.870620373050816 74-75 21.483590023583655 27.89739010676518 28.71159635611259 21.90742351353858 76-77 21.663267838548453 27.849635490772233 28.599180866231606 21.88791580444771 78-79 21.67119093554467 27.879558754070022 28.486012479043136 21.963237831342177 80-81 21.614086444778184 27.934259111395477 28.505916073051306 21.945738370775032 82-83 21.649875499956693 27.947870526634844 28.545985388827038 21.856268584581425 84-85 21.81365394334255 27.92704199219132 28.47270960344785 21.786594461018282 86-87 21.648232392453266 27.964075840374488 28.534388256262684 21.853303510909566 88-89 21.730203547463667 28.013142570284266 28.449396234699183 21.807257647552884 90-91 21.71905466319785 27.994875491014966 28.47230664121571 21.81376320457148 92-93 21.684183820206748 27.95567658107346 28.546289015123193 21.813850583596597 94-95 21.632153681019307 28.07123294692067 28.505553877788415 21.791059494271607 96-97 21.64100772501495 28.101619191082634 28.514581762059677 21.74279132184274 98-99 21.860722894716268 28.677172836369568 28.559605101438034 20.90249916747613 100-101 22.487468168859927 31.122874998709083 26.017243981561272 20.37241285086972 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3112.0 1 2613.0 2 2984.0 3 4003.5 4 4764.5 5 6913.5 6 9204.5 7 11992.5 8 15916.5 9 17838.0 10 16312.0 11 14475.5 12 15233.0 13 18929.5 14 27254.0 15 37976.0 16 47387.0 17 54490.0 18 56339.5 19 52507.5 20 46216.0 21 39732.0 22 36091.0 23 37577.0 24 43584.5 25 54204.0 26 68770.5 27 84713.0 28 102975.0 29 123313.0 30 142437.5 31 161833.5 32 182591.5 33 203193.0 34 222923.5 35 240823.0 36 259653.5 37 276853.0 38 288807.5 39 299044.0 40 309918.0 41 319448.0 42 325624.5 43 331118.0 44 336708.0 45 339756.5 46 339258.5 47 336643.0 48 331827.5 49 324597.0 50 315545.5 51 302409.5 52 285281.0 53 267322.5 54 248818.0 55 227480.5 56 205839.5 57 184419.5 58 162782.5 59 140638.5 60 116246.0 61 92780.5 62 72087.5 63 54714.5 64 40869.0 65 30056.0 66 21673.0 67 16030.5 68 12037.0 69 8687.5 70 6127.0 71 4266.5 72 2856.0 73 1909.5 74 1274.5 75 775.5 76 481.0 77 302.0 78 200.5 79 122.0 80 76.0 81 49.5 82 34.0 83 23.5 84 16.5 85 11.0 86 7.0 87 7.0 88 5.0 89 3.5 90 3.5 91 2.5 92 1.5 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.00377660656349537 4 0.0 5 0.04868860422545502 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 1.049057378748714E-4 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 2.531190439854223E-4 28-29 1.8530175371432733E-4 30-31 6.183753831685765E-6 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 4.4508007531009204E-5 44-45 0.0 46-47 6.928679091363958E-4 48-49 0.0012749354490374956 50-51 0.002288609636009498 52-53 0.005077196985872832 54-55 0.006364249061775176 56-57 0.00530604091072158 58-59 0.007378311866703391 60-61 0.006707019310186833 62-63 0.0053527603770857374 64-65 0.005597675432993074 66-67 0.0010605268669381521 68-69 0.002055920761127388 70-71 4.4381893018019547E-4 72-73 0.00152473910882829 74-75 0.0020707454129343422 76-77 4.8575479892621693E-4 78-79 0.0 80-81 1.6525106594448947E-4 82-83 0.0 84-85 0.0 86-87 9.294648489948805E-5 88-89 0.0 90-91 0.0 92-93 0.0 94-95 6.325376388278201E-4 96-97 2.466085569223515E-5 98-99 5.602474392235513E-4 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 109.0 20-21 420.0 22-23 978.0 24-25 1471.0 26-27 3195.0 28-29 6835.0 30-31 15894.0 32-33 19986.0 34-35 27882.0 36-37 43384.0 38-39 50884.0 40-41 53327.0 42-43 61835.0 44-45 75287.0 46-47 75859.0 48-49 68784.0 50-51 59791.0 52-53 51848.0 54-55 54483.0 56-57 55832.0 58-59 60627.0 60-61 60445.0 62-63 56980.0 64-65 61145.0 66-67 65844.0 68-69 67110.0 70-71 67439.0 72-73 61989.0 74-75 63064.0 76-77 66353.0 78-79 69195.0 80-81 70278.0 82-83 66859.0 84-85 65130.0 86-87 67942.0 88-89 71908.0 90-91 74356.0 92-93 73563.0 94-95 77851.0 96-97 125305.0 98-99 671291.0 100-101 5309754.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.6216706680829 #Duplication Level Percentage of deduplicated Percentage of total 1 90.40088500220361 78.30675688764114 2 6.913368047306603 11.9769498040208 3 1.5786133442947448 4.102263756652209 4 0.5331700134818982 1.847363092717052 5 0.23666324149724968 1.0250082682107866 6 0.12274343028455537 0.6379344596867728 7 0.0644311664825737 0.39067946986697444 8 0.0409869332538261 0.2840285307206096 9 0.02565291383680765 0.19998884286437932 >10 0.08191716060348297 1.0553781850570958 >50 0.0011140730269762595 0.0642836074356312 >100 3.9117046898223535E-4 0.05670466534966365 >500 2.1168080545234078E-5 0.01050661109453884 >1k 4.2335178170382616E-5 0.04215381868230545 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 1.2341851514690753E-5 0.0 0.0 1.2341851514690753E-5 2 0.0 1.2341851514690753E-5 0.0 2.4683703029381507E-5 1.2341851514690753E-5 3 0.0 1.2341851514690753E-5 0.0 3.7025554544072255E-5 1.2341851514690753E-5 4 0.0 2.4683703029381507E-5 0.0 8.639296060283527E-5 1.2341851514690753E-5 5 0.0 2.4683703029381507E-5 0.0 9.873481211752603E-5 1.2341851514690753E-5 6 4.936740605876301E-5 2.4683703029381507E-5 0.0 9.873481211752603E-5 2.4683703029381507E-5 7 4.936740605876301E-5 2.4683703029381507E-5 0.0 9.873481211752603E-5 2.4683703029381507E-5 8 4.936740605876301E-5 2.4683703029381507E-5 0.0 9.873481211752603E-5 3.7025554544072255E-5 9 4.936740605876301E-5 1.1107666363221677E-4 0.0 1.1107666363221677E-4 3.7025554544072255E-5 10-11 6.170925757345376E-5 1.1107666363221677E-4 0.0 1.9129869847770667E-4 3.7025554544072255E-5 12-13 6.170925757345376E-5 1.1107666363221677E-4 0.0 2.344951787791243E-4 4.3196480301417634E-5 14-15 6.170925757345376E-5 1.357603666615983E-4 0.0 3.085462878672688E-4 6.788018333079914E-5 16-17 9.256388636018065E-5 1.357603666615983E-4 0.0 3.1471721362461415E-4 7.405110908814451E-5 18-19 1.1107666363221677E-4 1.4193129241894364E-4 0.0 3.5791369392603183E-4 9.873481211752603E-5 20-21 1.357603666615983E-4 1.4810221817628902E-4 0.0 3.8259739695541335E-4 9.873481211752603E-5 22-23 1.4810221817628902E-4 1.7895684696301591E-4 0.0 4.25793877256831E-4 9.873481211752603E-5 24-25 1.542731439336344E-4 2.0364054999239743E-4 1.2341851514690753E-5 5.183577636170115E-4 9.873481211752603E-5 26-27 1.6044406969097978E-4 2.0981147574974278E-4 1.2341851514690753E-5 6.356053530065738E-4 1.1107666363221677E-4 28-29 1.6044406969097978E-4 2.0981147574974278E-4 1.2341851514690753E-5 0.0012033305226823484 1.1107666363221677E-4 30-31 1.6044406969097978E-4 2.2215332726443354E-4 1.2341851514690753E-5 0.002844796774136219 1.1107666363221677E-4 32-33 1.7278592120567054E-4 2.2215332726443354E-4 1.2341851514690753E-5 0.005788328360389963 1.6044406969097978E-4 34-35 2.0364054999239743E-4 2.5917888180850576E-4 1.2341851514690753E-5 0.009651327884488168 1.7278592120567054E-4 36-37 2.1598240150708816E-4 2.9620443635257804E-4 1.2341851514690753E-5 0.0158160827160762 1.7278592120567054E-4 38-39 2.2215332726443354E-4 3.2088813938195955E-4 1.2341851514690753E-5 0.028022173864105354 1.851277727203613E-4 40-41 2.344951787791243E-4 3.702555454407226E-4 1.2341851514690753E-5 0.06127112184468224 1.851277727203613E-4 42-43 2.715207333231966E-4 3.9493924847010405E-4 1.2341851514690753E-5 0.0732612305912043 1.9129869847770667E-4 44-45 2.7769165908054193E-4 4.8133220907293936E-4 1.2341851514690753E-5 0.08881196349971465 1.9746962423505205E-4 46-47 2.8386258483788733E-4 5.430414666463932E-4 1.2341851514690753E-5 0.10613992302634047 2.2832425302177892E-4 48-49 2.9620443635257804E-4 5.492123924037385E-4 1.2341851514690753E-5 0.12222135554998252 2.715207333231966E-4 50-51 2.9620443635257804E-4 6.788018333079913E-4 1.2341851514690753E-5 0.13788933604788245 2.715207333231966E-4 52-53 2.9620443635257804E-4 6.911436848226821E-4 1.2341851514690753E-5 0.16283221795907243 2.7769165908054193E-4 54-55 2.9620443635257804E-4 6.911436848226821E-4 1.2341851514690753E-5 0.21870377976607747 2.8386258483788733E-4 56-57 2.9620443635257804E-4 7.158273878520637E-4 1.2341851514690753E-5 0.28141889823797855 2.8386258483788733E-4 58-59 3.1471721362461415E-4 7.21998313609409E-4 1.2341851514690753E-5 0.3516687170595983 2.8386258483788733E-4 60-61 3.2088813938195955E-4 7.405110908814451E-4 1.2341851514690753E-5 0.374908423461761 2.9620443635257804E-4 62-63 3.4557184241134107E-4 7.651947939108267E-4 1.2341851514690753E-5 0.386701062584048 2.9620443635257804E-4 64-65 3.4557184241134107E-4 8.392459029989711E-4 1.2341851514690753E-5 0.3973027130351674 2.9620443635257804E-4 66-67 3.4557184241134107E-4 8.51587754513662E-4 1.2341851514690753E-5 0.40365259563947575 2.9620443635257804E-4 68-69 3.5791369392603183E-4 8.639296060283528E-4 1.2341851514690753E-5 0.4093236764104762 3.0237536210992344E-4 70-71 3.5791369392603183E-4 8.762714575430435E-4 1.2341851514690753E-5 0.4149762444042045 3.085462878672688E-4 72-73 3.702555454407226E-4 8.762714575430435E-4 1.2341851514690753E-5 0.41897500429496437 3.5791369392603183E-4 74-75 3.887683227127587E-4 9.00955160572425E-4 1.2341851514690753E-5 0.4224492354963498 3.5791369392603183E-4 76-77 4.011101742274495E-4 9.379807151164972E-4 1.2341851514690753E-5 0.42546681819169163 3.702555454407226E-4 78-79 4.0728109998479486E-4 9.503225666311879E-4 1.2341851514690753E-5 0.42819436737643835 3.702555454407226E-4 80-81 4.0728109998479486E-4 9.503225666311879E-4 1.2341851514690753E-5 0.4293298177157899 3.887683227127587E-4 82-83 4.0728109998479486E-4 9.503225666311879E-4 1.2341851514690753E-5 0.4298358336278922 4.1962295149948557E-4 84-85 4.1962295149948557E-4 9.626644181458787E-4 1.2341851514690753E-5 0.4303665332430239 4.1962295149948557E-4 86-87 4.1962295149948557E-4 9.626644181458787E-4 1.2341851514690753E-5 0.4305763447187736 4.1962295149948557E-4 88-89 4.257938772568309E-4 0.0010243736757193326 1.2341851514690753E-5 0.4306442249021044 4.257938772568309E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15660 0.0 57.539867 1 GTATCAA 29855 0.0 39.449516 1 TCAACGC 35255 0.0 33.00242 4 ATCAACG 35235 0.0 32.986347 3 TATCAAC 35840 0.0 32.53758 2 CAACGCA 36250 0.0 32.167778 5 GTGGTAT 5800 0.0 31.828285 1 AACGCAG 37200 0.0 31.36453 6 TGGTATC 5675 0.0 30.40622 2 ACGCAGA 41775 0.0 27.93993 7 CGCAGAG 42110 0.0 27.707443 8 GCAGAGT 47735 0.0 24.4875 9 GAGTACT 28925 0.0 22.852434 12-13 CAGAGTA 47045 0.0 21.866518 10-11 GTACATG 31995 0.0 20.819618 1 GTACTTT 31590 0.0 20.782183 14-15 TACATGG 31370 0.0 20.56227 2 ACATGGG 31615 0.0 19.627094 3 AGAGTAC 44360 0.0 19.244246 10-11 ACTTTTT 35790 0.0 18.41649 16-17 >>END_MODULE