##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140398_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11959762 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.789992560052617 27.0 18.0 32.0 18.0 33.0 2 26.71478320387981 28.0 18.0 31.0 18.0 33.0 3 28.404222007093452 30.0 27.0 32.0 18.0 33.0 4 29.188741046853607 31.0 28.0 33.0 15.0 33.0 5 30.7822124721211 33.0 32.0 33.0 27.0 33.0 6 33.72379943681153 36.0 33.0 38.0 26.0 38.0 7 35.31057424052418 38.0 35.0 38.0 29.0 38.0 8 35.86470148820687 38.0 36.0 38.0 31.0 38.0 9 36.064353203684156 38.0 37.0 38.0 32.0 38.0 10-11 36.1793598819107 38.0 37.0 38.0 33.0 38.0 12-13 36.17587482092035 38.0 37.0 38.0 33.0 38.0 14-15 36.295105663473905 38.0 37.0 38.0 33.0 38.0 16-17 36.317267475724016 38.0 37.0 38.0 33.0 38.0 18-19 36.35281350080378 38.0 37.0 38.0 33.0 38.0 20-21 36.37136459472647 38.0 37.0 38.0 33.0 38.0 22-23 36.37018330639724 38.0 37.0 38.0 33.0 38.0 24-25 36.36706329119005 38.0 37.0 38.0 33.0 38.0 26-27 36.30576504684858 38.0 37.0 38.0 33.0 38.0 28-29 36.277427196196065 38.0 37.0 38.0 33.0 38.0 30-31 36.27606090054377 38.0 37.0 38.0 33.0 38.0 32-33 36.25134817587056 38.0 37.0 38.0 33.0 38.0 34-35 36.22130027294466 38.0 37.0 38.0 33.0 38.0 36-37 36.19552474386933 38.0 37.0 38.0 33.0 38.0 38-39 36.18213931971868 38.0 37.0 38.0 33.0 38.0 40-41 36.17347442389797 38.0 37.0 38.0 33.0 38.0 42-43 36.13386914236369 38.0 37.0 38.0 33.0 38.0 44-45 36.08203075887435 38.0 37.0 38.0 33.0 38.0 46-47 36.040896754422704 38.0 37.0 38.0 31.5 38.0 48-49 35.989023933240034 38.0 37.0 38.0 31.0 38.0 50-51 35.956184427055234 38.0 37.0 38.0 31.0 38.0 52-53 35.935111431744495 38.0 37.0 38.0 31.0 38.0 54-55 35.89992049471415 38.0 37.0 38.0 31.0 38.0 56-57 35.86826427066935 38.0 37.0 38.0 31.0 38.0 58-59 35.83946164102842 38.0 37.0 38.0 31.0 38.0 60-61 35.838490778946095 38.0 37.0 38.0 31.0 38.0 62-63 35.83378989021019 38.0 37.0 38.0 31.0 38.0 64-65 35.80442433138729 38.0 37.0 38.0 31.0 38.0 66-67 35.78429064351841 38.0 37.0 38.0 31.0 38.0 68-69 35.77546452994079 38.0 37.0 38.0 31.0 38.0 70-71 35.745310054139075 38.0 37.0 38.0 30.0 38.0 72-73 35.7366484122934 38.0 37.0 38.0 30.5 38.0 74-75 35.75314926370193 38.0 37.0 38.0 31.0 38.0 76-77 35.71708299418887 38.0 37.0 38.0 30.0 38.0 78-79 35.71391737466398 38.0 37.0 38.0 29.0 38.0 80-81 35.68821973700789 38.0 36.5 38.0 29.0 38.0 82-83 35.668662212227794 38.0 36.0 38.0 29.0 38.0 84-85 35.64523419338684 38.0 36.0 38.0 29.0 38.0 86-87 35.61774759262002 38.0 36.0 38.0 29.0 38.0 88-89 35.538946366057665 38.0 36.0 38.0 29.0 38.0 90-91 35.55765399848459 38.0 36.0 38.0 29.0 38.0 92-93 35.591360647665766 38.0 36.0 38.0 29.0 38.0 94-95 35.567082086442554 38.0 36.0 38.0 29.0 38.0 96-97 35.56638217745568 38.0 36.0 38.0 29.0 38.0 98-99 35.58935945087755 38.0 36.0 38.0 29.0 38.0 100-101 34.99496740644841 38.0 35.0 38.0 28.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 3.0 18 37.0 19 98.0 20 232.0 21 1116.0 22 4445.0 23 13071.0 24 29337.0 25 54635.0 26 87485.0 27 130256.0 28 180641.0 29 237494.0 30 303164.0 31 379128.0 32 475025.0 33 611074.0 34 831452.0 35 1270128.0 36 2645924.0 37 4705017.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.437614728453624 25.83885030488065 13.982485604646646 23.741049362019076 2 13.187862768506598 26.168129432676 38.71294428768733 21.931063511130073 3 19.060651198041647 28.124541679815284 29.89680782552084 22.91799929662223 4 13.634831593611562 19.729581189984238 38.97618086651381 27.659406349890393 5 13.49202186242181 39.968790675919536 34.143666458944715 12.395521002713938 6 28.46334233072531 40.19445370233956 18.786310296141345 12.555893670793782 7 24.96723597008034 34.0773252845667 23.75121678842773 17.20422195692523 8 23.557191188252744 37.926156055613816 21.371269762726048 17.14538299340739 9 24.614558767397437 17.580514952881483 21.95607176914873 35.848854510572345 10-11 23.23399077673954 28.028981680404673 29.41002504899345 19.327002493862334 12-13 24.14742133444718 25.35923897813514 29.75102806188903 20.742311625528654 14-15 21.288359806608902 26.88575238389082 27.47273604840923 24.353151761091045 16-17 20.642943638280293 30.027602984425062 28.175450045705357 21.15400333158929 18-19 20.657342512334274 29.094182643433875 30.119533315127846 20.128941529104008 20-21 21.504266460560007 28.179635550923997 29.98643296521465 20.329665023301345 22-23 21.15129203191725 28.094192401762086 29.914935437914792 20.83958012840587 24-25 20.988583791342048 28.21901374527914 29.940648426602085 20.851754036776736 26-27 20.924402179295356 28.3714069864858 29.850225303594417 20.85396553062443 28-29 20.87897177899819 28.41085077370449 29.89803792477434 20.812139522522983 30-31 21.133050828507084 28.248331608192935 29.816108604197407 20.80250895910257 32-33 20.99278570924585 28.393715582487133 29.755360631059364 20.858138077207652 34-35 21.09483702030297 28.40995739558445 29.771207199112677 20.72399838499991 36-37 21.070550652462913 28.27623538293328 29.794214974683044 20.858998989920767 38-39 20.962282859849424 28.363522804078485 29.826543172652187 20.847651163419904 40-41 21.150730748755507 28.281399938556174 29.725628365472662 20.84224094721566 42-43 21.07770225882405 28.36961204312669 29.512143574442973 21.040542123606283 44-45 21.108189962240953 28.488413883262286 29.331141478157964 21.072254676338797 46-47 21.19608001936739 28.433592668258555 29.142117803194573 21.22820950917948 48-49 21.13481856001657 28.51098561499763 29.194000613901693 21.16019521108411 50-51 21.09345918397745 28.624961845158836 29.055823151416178 21.225755819447535 52-53 21.244740307390543 28.536570195924966 28.95483638128343 21.26385311540105 54-55 21.22853977625942 28.51023081921973 28.977192898513316 21.284036506007535 56-57 21.255767453742102 28.518188457478416 28.979620799912777 21.246423288866705 58-59 21.201978879062192 28.574148905460188 29.04027794737565 21.18359426810197 60-61 21.28825228476519 28.497427157014215 29.051317105308737 21.16300345291186 62-63 21.215960966730506 28.60010373783076 28.968743200434545 21.215192095004184 64-65 21.147393793970906 28.593718602148883 28.967769928978583 21.291117674901628 66-67 21.242156130748473 28.666583613520793 28.80277487294412 21.288485382786618 68-69 21.20304742279692 28.614828958978332 28.852937459987636 21.329186158237114 70-71 21.183833386553268 28.442814904563413 28.9023686280631 21.47098308082022 72-73 21.245142059824243 28.440145606663066 28.87331794001445 21.441394393498243 74-75 21.13826719891299 28.540275982061864 28.856765263413127 21.46469155561202 76-77 21.32162193238311 28.496844644805545 28.74785068628084 21.433682736530503 78-79 21.32852522533507 28.561331012143743 28.629612798538062 21.48053096398312 80-81 21.29302727089211 28.57197915910409 28.660260273179976 21.47473329682382 82-83 21.29828754085516 28.537763770055424 28.72846727589195 21.435481413197465 84-85 21.468520121214596 28.54658956260004 28.667060858821024 21.31782945736434 86-87 21.31599758523146 28.61836531449028 28.658308969891017 21.40732813038725 88-89 21.396675877204252 28.67215969978178 28.592487789959964 21.338676633054007 90-91 21.41212779258175 28.647219896581838 28.67916526643826 21.261487044398148 92-93 21.444943055754244 28.633912763965203 28.61399820694837 21.307145973332183 94-95 21.322098256839276 28.677494530219327 28.660520180241022 21.33988703270038 96-97 21.349436515327163 28.67348296242802 28.707495662892 21.269584859352815 98-99 21.465099491789456 29.243839316989405 28.778108511927158 20.512952679293978 100-101 22.04687764004779 31.76095570697064 26.329261331943027 19.862905321038546 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3166.0 1 2929.5 2 3153.0 3 4008.5 4 4953.5 5 6571.0 6 8746.5 7 13030.0 8 16839.5 9 17689.0 10 17179.5 11 16378.5 12 17571.5 13 22289.0 14 32971.5 15 46099.0 16 54629.5 17 56745.5 18 54435.5 19 50559.5 20 47361.5 21 46047.0 22 48784.5 23 57395.5 24 72261.5 25 94633.5 26 123324.5 27 154282.0 28 188007.5 29 223737.5 30 256245.5 31 287859.5 32 320331.0 33 352698.5 34 380969.0 35 405010.5 36 430780.5 37 453440.0 38 468059.5 39 475780.5 40 486331.0 41 495714.5 42 496298.5 43 495936.0 44 496672.5 45 493850.0 46 485710.5 47 475220.0 48 460269.5 49 441812.5 50 420873.0 51 398281.5 52 372427.5 53 344229.0 54 317620.0 55 288924.5 56 259794.0 57 229480.5 58 199370.5 59 169773.5 60 138735.0 61 109791.5 62 83584.5 63 62132.0 64 45750.0 65 32805.5 66 23110.5 67 16946.5 68 12510.5 69 8936.5 70 6369.5 71 4370.5 72 2909.0 73 1908.5 74 1279.5 75 825.0 76 498.0 77 299.5 78 192.5 79 126.5 80 84.5 81 47.5 82 30.5 83 24.0 84 20.0 85 15.5 86 12.5 87 11.0 88 9.0 89 9.5 90 8.0 91 4.0 92 1.0 93 0.0 94 0.5 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.002742529491807613 4 7.608847065685755E-4 5 0.05253449023483912 6 0.0 7 0.0 8 0.0 9 2.257570008500169E-4 10-11 0.0 12-13 4.180685200926239E-6 14-15 4.975015389102225E-4 16-17 3.762616680833615E-5 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 1.25465907190861E-4 28-29 0.0 30-31 2.5125430335808076E-5 32-33 0.0 34-35 2.9433965088542205E-5 36-37 0.0 38-39 0.0 40-41 0.0 42-43 1.2010649156284069E-4 44-45 2.4622024919649044E-4 46-47 1.3062521144956106E-4 48-49 0.0020185066341950383 50-51 6.895006291693242E-4 52-53 0.00546304609663132 54-55 0.0011816246094092859 56-57 0.002802269856604878 58-59 0.008218647221552957 60-61 0.009180537206286213 62-63 0.007619076381033555 64-65 0.010732680287925253 66-67 0.004942727258486165 68-69 0.004570274407010433 70-71 0.004815735768763215 72-73 0.007416702154026326 74-75 0.005446564817679753 76-77 0.0027303756933456935 78-79 1.8242627537906947E-4 80-81 3.1370594728216374E-4 82-83 0.0 84-85 0.0 86-87 9.792277594561358E-4 88-89 3.625922674298233E-5 90-91 1.1521267657848307E-4 92-93 2.1185694465740483E-5 94-95 7.769133916775645E-4 96-97 2.877822376784813E-4 98-99 1.008486639176815E-4 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 157.0 20-21 574.0 22-23 1140.0 24-25 1749.0 26-27 3693.0 28-29 7697.0 30-31 19657.0 32-33 26161.0 34-35 35865.0 36-37 55810.0 38-39 64526.0 40-41 68273.0 42-43 77271.0 44-45 90637.0 46-47 90533.0 48-49 84175.0 50-51 76130.0 52-53 67163.0 54-55 71712.0 56-57 72703.0 58-59 81968.0 60-61 81712.0 62-63 79342.0 64-65 86192.0 66-67 90963.0 68-69 92787.0 70-71 93476.0 72-73 88020.0 74-75 89872.0 76-77 94311.0 78-79 98918.0 80-81 100209.0 82-83 95007.0 84-85 94638.0 86-87 98202.0 88-89 104253.0 90-91 107443.0 92-93 107439.0 94-95 115914.0 96-97 185394.0 98-99 997978.0 100-101 8060098.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.70652398181424 #Duplication Level Percentage of deduplicated Percentage of total 1 87.48971238465874 71.4848028311915 2 8.316221220719061 13.589790572175092 3 2.2397343003027896 5.490027129617455 4 0.8991120585724454 2.938532839043515 5 0.4177608678774487 1.7066894184946149 6 0.21454775610901927 1.051797082785961 7 0.12937218657904656 0.7399386165710431 8 0.08092855500458396 0.5289912736236491 9 0.05227274709960262 0.38439220180400935 >10 0.1577814834477443 1.8742988742106332 >50 0.0020993421137243617 0.11542829205377281 >100 4.390351825978408E-4 0.07432484363872792 >500 0.0 0.0 >1k 1.8062333232541832E-5 0.02098602479000588 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.5084111205557437E-5 0.0 0.0 0.0 3 0.0 3.344548160740991E-5 0.0 0.0 0.0 4 0.0 1.4214329683149212E-4 0.0 8.361370401852478E-6 0.0 5 0.0 1.4214329683149212E-4 0.0 8.361370401852478E-6 0.0 6 0.0 1.4214329683149212E-4 0.0 8.361370401852478E-6 0.0 7 0.0 1.4214329683149212E-4 0.0 8.361370401852478E-6 0.0 8 0.0 1.588660376351971E-4 0.0 8.361370401852478E-6 0.0 9 0.0 2.1739563044816443E-4 0.0 1.6722740803704957E-5 0.0 10-11 0.0 2.2157631564909065E-4 0.0 2.0903426004631195E-5 0.0 12-13 0.0 2.257570008500169E-4 0.0 2.5084111205557437E-5 0.0 14-15 0.0 2.9682864926576296E-4 0.0 2.9264796406483675E-5 0.0 16-17 0.0 3.093707048685417E-4 0.0 3.344548160740991E-5 0.0 18-19 0.0 3.386355012750254E-4 0.0 4.598753721018863E-5 0.0 20-21 0.0 3.84623038485214E-4 0.0 6.271027801389359E-5 0.0 22-23 0.0 4.2224920529355015E-4 0.0 7.525233361667231E-5 0.0 24-25 8.361370401852478E-6 4.473333164991076E-4 0.0 1.0033644482222975E-4 0.0 26-27 8.361370401852478E-6 4.515140017000338E-4 0.0 2.0903426004631196E-4 0.0 28-29 8.361370401852478E-6 4.515140017000338E-4 0.0 5.142242797139273E-4 0.0 30-31 8.361370401852478E-6 4.8495948330744374E-4 0.0 0.0016722740803704957 0.0 32-33 1.2542055602778718E-5 4.8495948330744374E-4 0.0 0.004343731923762363 0.0 34-35 2.5084111205557437E-5 5.43489076120411E-4 0.0 0.0077593517329191 0.0 36-37 3.344548160740991E-5 6.020186689333785E-4 0.0 0.013323843735351924 0.0 38-39 3.344548160740991E-5 6.103800393352309E-4 0.0 0.024507176647829615 0.0 40-41 3.7626166808336155E-5 6.64728946947272E-4 0.0 0.058621567887387725 0.0 42-43 4.180685200926239E-5 6.856323729519032E-4 0.0 0.06909418431570796 0.0 44-45 4.180685200926239E-5 8.110529289796904E-4 0.0 0.08497242670882582 0.0 46-47 4.180685200926239E-5 9.155700590028463E-4 0.0 0.10294519238760771 0.0 48-49 4.598753721018863E-5 9.239314294046989E-4 0.0 0.11998148458138214 0.0 50-51 5.016822241111487E-5 0.0010242678742269286 0.0 0.13602695438253704 0.0 52-53 5.016822241111487E-5 0.001028448559427855 0.0 0.16504509036216608 0.0 54-55 5.852959281296735E-5 0.0010368099298297072 0.0 0.23619199111152883 0.0 56-57 5.852959281296735E-5 0.0010535326706334123 0.0 0.31433317820204115 0.0 58-59 5.852959281296735E-5 0.0010577133558343386 0.0 0.4020690378286792 0.0 60-61 5.852959281296735E-5 0.0010827974670398958 0.0 0.4255394045466791 0.0 62-63 5.852959281296735E-5 0.001120423633848232 0.0 0.4397202887482209 0.0 64-65 5.852959281296735E-5 0.0012123987082686093 0.0 0.4492313475803281 0.0 66-67 5.852959281296735E-5 0.0012123987082686093 0.0 0.45446138476668685 0.0 68-69 5.852959281296735E-5 0.0012458441898760193 0.0 0.45941967741498535 0.0 70-71 5.852959281296735E-5 0.0012667476158806507 0.0 0.46447830650810606 0.0 72-73 5.852959281296735E-5 0.0012792896714834293 0.0 0.4685921007458175 0.0 74-75 5.852959281296735E-5 0.0013336385790954702 0.0 0.47156038723847515 0.0 76-77 5.852959281296735E-5 0.001417252283113995 0.0 0.47451195099032906 0.0 78-79 5.852959281296735E-5 0.0014381557091186262 0.0 0.47714996335211357 0.0 80-81 5.852959281296735E-5 0.0014381557091186262 0.0 0.4784919633016108 0.0 82-83 5.852959281296735E-5 0.0014423363943195525 0.0 0.47897274209971735 0.0 84-85 5.852959281296735E-5 0.00146742050552511 0.0 0.4794618822682257 0.0 86-87 5.852959281296735E-5 0.0014799625611278888 0.0 0.47964165173186557 0.0 88-89 5.852959281296735E-5 0.0015259500983380774 0.0 0.47973362680628595 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14410 0.0 46.518387 1 GTATCAA 26045 0.0 35.86876 1 ATCAACG 34090 0.0 28.411386 3 TCAACGC 34540 0.0 28.065582 4 CAACGCA 35330 0.0 27.437904 5 TATCAAC 35270 0.0 27.041788 2 AACGCAG 36970 0.0 26.313366 6 ACGCAGA 44070 0.0 21.98536 7 TGGTATC 7660 0.0 21.905987 2 GTGGTAT 7940 0.0 21.84523 1 CGCAGAG 44570 0.0 21.768332 8 GCAGAGT 52205 0.0 18.576382 9 AGAGTAC 48325 0.0 18.233713 10-11 AGTACTT 34420 0.0 16.820364 12-13 GAGTACT 30910 0.0 16.734373 12-13 CAGAGTA 52290 0.0 15.970326 9 TACATGG 36335 0.0 15.254193 2 GTACATG 36870 0.0 15.06822 1 GTACTTT 34400 0.0 14.929503 14-15 ACATGGG 37005 0.0 14.696068 3 >>END_MODULE