##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140397_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 18386058 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 24.263905998773637 18.0 18.0 32.0 18.0 33.0 2 27.445422123654783 29.0 25.0 32.0 18.0 33.0 3 29.43335243476334 31.0 28.0 33.0 25.0 33.0 4 30.619142776553844 32.0 31.0 33.0 27.0 33.0 5 31.090270192773243 33.0 32.0 33.0 27.0 33.0 6 35.032822805192936 37.0 35.0 38.0 29.0 38.0 7 35.41857069090068 38.0 35.0 38.0 29.0 38.0 8 36.08209160441025 38.0 37.0 38.0 33.0 38.0 9 36.27911643703071 38.0 37.0 38.0 33.0 38.0 10-11 36.32693125410569 38.0 37.0 38.0 33.0 38.0 12-13 36.30785250432692 38.0 37.0 38.0 33.0 38.0 14-15 36.41145994970755 38.0 37.0 38.0 33.0 38.0 16-17 36.40575448527357 38.0 37.0 38.0 33.0 38.0 18-19 36.432639285702244 38.0 38.0 38.0 34.0 38.0 20-21 36.44247593031955 38.0 38.0 38.0 34.0 38.0 22-23 36.43934353498568 38.0 38.0 38.0 34.0 38.0 24-25 36.43415801305164 38.0 38.0 38.0 34.0 38.0 26-27 36.370991578689804 38.0 37.5 38.0 33.0 38.0 28-29 36.34481650204362 38.0 37.0 38.0 33.0 38.0 30-31 36.34214540845743 38.0 37.0 38.0 33.0 38.0 32-33 36.31855350109293 38.0 37.0 38.0 33.0 38.0 34-35 36.29287622436334 38.0 37.0 38.0 33.0 38.0 36-37 36.26910171371872 38.0 37.0 38.0 33.0 38.0 38-39 36.258219720448416 38.0 37.0 38.0 33.0 38.0 40-41 36.246770071428585 38.0 37.0 38.0 33.0 38.0 42-43 36.196393508045404 38.0 37.0 38.0 33.0 38.0 44-45 36.14654117895411 38.0 37.0 38.0 33.0 38.0 46-47 36.111078708341964 38.0 37.0 38.0 33.0 38.0 48-49 36.06066388415157 38.0 37.0 38.0 32.5 38.0 50-51 36.028362937256375 38.0 37.0 38.0 31.0 38.0 52-53 36.007169152841776 38.0 37.0 38.0 31.0 38.0 54-55 35.96935035420877 38.0 37.0 38.0 31.0 38.0 56-57 35.937845081585465 38.0 37.0 38.0 31.0 38.0 58-59 35.9134528853849 38.0 37.0 38.0 31.0 38.0 60-61 35.90989461599322 38.0 37.0 38.0 31.0 38.0 62-63 35.90274744542458 38.0 37.0 38.0 31.0 38.0 64-65 35.87351371743553 38.0 37.0 38.0 31.0 38.0 66-67 35.85076592683174 38.0 37.0 38.0 31.0 38.0 68-69 35.84736649228607 38.0 37.0 38.0 31.0 38.0 70-71 35.81580880396423 38.0 37.0 38.0 31.0 38.0 72-73 35.804948787264934 38.0 37.0 38.0 31.0 38.0 74-75 35.817712951165106 38.0 37.0 38.0 31.0 38.0 76-77 35.775770461954764 38.0 37.0 38.0 31.0 38.0 78-79 35.77524500409515 38.0 37.0 38.0 31.0 38.0 80-81 35.75101698006672 38.0 37.0 38.0 31.0 38.0 82-83 35.73168619105034 38.0 37.0 38.0 30.5 38.0 84-85 35.70372966950505 38.0 36.5 38.0 29.5 38.0 86-87 35.67498445464674 38.0 36.0 38.0 29.0 38.0 88-89 35.59565790842126 38.0 36.0 38.0 29.0 38.0 90-91 35.615006399380604 38.0 36.0 38.0 29.0 38.0 92-93 35.65109470967407 38.0 36.0 38.0 29.0 38.0 94-95 35.621703075466584 38.0 36.0 38.0 29.0 38.0 96-97 35.619190220074444 38.0 36.0 38.0 29.0 38.0 98-99 35.643509997328835 38.0 36.0 38.0 30.0 38.0 100-101 35.05292144574811 38.0 35.0 38.0 28.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 7.0 18 63.0 19 109.0 20 278.0 21 1402.0 22 5936.0 23 18010.0 24 41211.0 25 76631.0 26 125120.0 27 183960.0 28 257324.0 29 338806.0 30 434518.0 31 549249.0 32 692225.0 33 899445.0 34 1226789.0 35 1884520.0 36 3984119.0 37 7666336.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.023231080854856 28.434376743508587 13.538676969255725 24.003715206380836 2 13.985172895679977 21.30393040204703 39.02794715430573 25.682949547967272 3 16.389883716895234 26.31716068067448 32.85909018372267 24.433865418707615 4 13.318887531875538 19.35986498397011 39.0558831151914 28.26536436896296 5 13.6872794597866 36.91362817307733 35.63247475082214 13.766617616313928 6 28.66563349250829 39.88113167052992 18.719205606770085 12.734029230191704 7 25.147217527541795 33.83136287288988 23.901866294558626 17.1195533050097 8 23.55085576255661 37.72154966551286 21.31302424913486 17.414570322795676 9 24.780507289446685 17.14436263354703 21.79634518203819 36.27878489496809 10-11 23.209684207457627 27.525829625904585 29.57315537675341 19.69133078988438 12-13 24.113957002473203 25.036280888385125 29.671649291861506 21.17811281728016 14-15 21.53196850753441 26.470311489974563 27.16829965868024 24.82942034381079 16-17 20.9755737399314 29.66308292658253 27.961621995803615 21.399721337682465 18-19 20.991881457134532 28.858894059835993 29.63603726258233 20.513187220447147 20-21 21.803282593911007 27.94068967932911 29.53408528713396 20.721942439625916 22-23 21.4994512867999 27.771170277759406 29.44558318509519 21.283795250345502 24-25 21.29925213641215 27.921402912572113 29.519759685778762 21.25958526523698 26-27 21.29778977863238 28.0854409826676 29.371533373802666 21.24523586489735 28-29 21.242230724157086 28.147561569391815 29.4078663132124 21.2023413932387 30-31 21.526110289876204 27.958402092027562 29.33957033015096 21.17591728794527 32-33 21.37302399241297 28.060322920378095 29.271517218403094 21.295135868805843 34-35 21.46634067493224 28.090085297194424 29.284730809909554 21.15884321796379 36-37 21.43484704399018 27.98397001060361 29.33811080059636 21.243072144809847 38-39 21.31014313355626 28.127702439887575 29.336046251940346 21.226108174615817 40-41 21.530368051267164 27.987230963929623 29.22896580391992 21.253435180883294 42-43 21.4164120203136 28.09869550665824 29.045113891035385 21.439778581992776 44-45 21.500543214198625 28.125392495299906 28.926943353896345 21.447120936605124 46-47 21.57023881668113 28.105139787690884 28.733002760961607 21.59161863466638 48-49 21.457368511593767 28.20665312447922 28.84151538782394 21.494462976103076 50-51 21.49405951485906 28.257696997776822 28.665174901067324 21.583068586296793 52-53 21.625241541757628 28.203611357643165 28.555262490371707 21.615884610227496 54-55 21.575336572843266 28.127373033149638 28.614485629028835 21.682804764978258 56-57 21.558056851121524 28.14933746659087 28.644195609473066 21.648410072814535 58-59 21.552332058257686 28.178152202259643 28.68150788209316 21.588007857389513 60-61 21.61641824923624 28.14925922294485 28.70257825583736 21.53174427198155 62-63 21.600406038155445 28.177945330344418 28.660305337994966 21.56134329350517 64-65 21.51721258197669 28.142920840344924 28.669932666564733 21.66993391111365 66-67 21.57604546252839 28.29328626495412 28.4702978833681 21.660370389149385 68-69 21.52625539540724 28.23194414810079 28.50011657185129 21.74168388464068 70-71 21.565381746833495 28.017275676669083 28.550094381222284 21.867248195275135 72-73 21.576242846004853 28.081444558147084 28.495345114096537 21.846967481751523 74-75 21.482898684127097 28.17600449717294 28.46403792812376 21.877058890576205 76-77 21.66171373125845 28.110932070116196 28.390255050143704 21.837099148481656 78-79 21.65690123937274 28.155128659241413 28.314077002325593 21.873893099060254 80-81 21.648025671179433 28.180291213709697 28.26060366012265 21.911079454988226 82-83 21.680466124830826 28.131070505081567 28.356250224691887 21.83221314539572 84-85 21.784498694042043 28.1908863741066 28.274196909030135 21.75041802282122 86-87 21.689514520717697 28.22828222684519 28.291919860539423 21.79028339189769 88-89 21.707030349990017 28.238379604424413 28.296785799010465 21.75780424657511 90-91 21.758227536278827 28.275864307486675 28.338785565168738 21.627122591065763 92-93 21.840588839934284 28.187655724236333 28.287292678679105 21.68446275715028 94-95 21.678740936692254 28.28944091750586 28.314110150282108 21.717707995519778 96-97 21.683177438724734 28.30944633143424 28.32906365865736 21.678312571183668 98-99 21.830643526583636 28.828376729326916 28.44644529355154 20.894534450537904 100-101 22.385032360749857 31.341570364486497 25.94922860592114 20.324168668842507 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 4562.0 1 4359.5 2 5155.0 3 6235.5 4 7135.5 5 9078.5 6 11385.5 7 15044.0 8 18802.0 9 20944.5 10 20986.5 11 20724.0 12 22996.5 13 28829.0 14 41365.0 15 56642.0 16 67659.0 17 73044.0 18 73282.5 19 70248.5 20 66810.5 21 65554.0 22 69684.5 23 82155.5 24 102147.5 25 132107.5 26 172702.0 27 217415.5 28 265306.0 29 316085.0 30 362531.0 31 410769.5 32 462104.0 33 511796.0 34 556476.0 35 593645.0 36 634321.5 37 672758.0 38 697794.5 39 713328.5 40 733072.5 41 753115.5 42 764010.5 43 770556.5 44 773522.5 45 771591.5 46 763830.5 47 754640.0 48 740457.0 49 716435.5 50 689230.0 51 659348.5 52 620767.5 53 577140.5 54 533897.5 55 488132.5 56 440079.0 57 391828.0 58 343920.0 59 292464.5 60 238075.0 61 188356.0 62 145209.5 63 109128.0 64 80203.0 65 58249.0 66 42131.0 67 30850.0 68 22792.5 69 16310.0 70 11568.0 71 8229.5 72 5786.5 73 3921.5 74 2618.0 75 1721.0 76 1050.5 77 609.5 78 385.0 79 233.0 80 153.5 81 96.0 82 63.5 83 48.0 84 33.5 85 22.0 86 14.0 87 9.5 88 6.0 89 6.0 90 5.0 91 2.5 92 1.0 93 0.0 94 0.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.002240828349393872 4 5.058180497418207E-4 5 0.049080667536238604 6 0.0 7 0.0 8 0.0 9 1.4141149777728318E-4 10-11 0.0 12-13 2.7194518803323693E-6 14-15 3.9703997452852593E-4 16-17 2.991397068365606E-5 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 1.115331052290909E-4 28-29 0.0 30-31 2.7238799861746748E-5 32-33 0.0 34-35 3.5565905538049224E-5 36-37 0.0 38-39 0.0 40-41 0.0 42-43 1.173355379004683E-4 44-45 2.3076524541447646E-4 46-47 1.2484549660445786E-4 48-49 0.002045188131421444 50-51 6.282818178268048E-4 52-53 0.005441467727815752 54-55 0.0011831703051247225 56-57 0.0030068779833040014 58-59 0.008318820099099166 60-61 0.0089556451213003 62-63 0.007352517442357256 64-65 0.010829438140036715 66-67 0.00477311229608531 68-69 0.004489630097738598 70-71 0.0049405115930944744 72-73 0.007366028468503838 74-75 0.005469956628516948 76-77 0.0026745328290246205 78-79 1.4900372706909572E-4 80-81 3.2731052509216493E-4 82-83 0.0 84-85 0.0 86-87 7.933962155540703E-4 88-89 2.7306962135278826E-5 90-91 8.632587444398799E-5 92-93 1.397726597688859E-5 94-95 7.605168783986925E-4 96-97 3.731152924100959E-4 98-99 4.4468783692051895E-5 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 205.0 20-21 715.0 22-23 1583.0 24-25 2400.0 26-27 5300.0 28-29 12056.0 30-31 32411.0 32-33 42352.0 34-35 58419.0 36-37 90940.0 38-39 104296.0 40-41 109034.0 42-43 124068.0 44-45 143594.0 46-47 144425.0 48-49 134039.0 50-51 124053.0 52-53 111792.0 54-55 119194.0 56-57 120434.0 58-59 133261.0 60-61 133111.0 62-63 130286.0 64-65 140425.0 66-67 148255.0 68-69 151069.0 70-71 148944.0 72-73 142910.0 74-75 146766.0 76-77 154101.0 78-79 159174.0 80-81 160000.0 82-83 153671.0 84-85 153668.0 86-87 159486.0 88-89 166946.0 90-91 171625.0 92-93 171436.0 94-95 186762.0 96-97 292724.0 98-99 1536178.0 100-101 1.216395E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.75233393606787 #Duplication Level Percentage of deduplicated Percentage of total 1 87.90879224054436 71.86748939165395 2 7.980932189444899 13.049196669452254 3 2.152025888065629 5.277994171206131 4 0.8535255668285063 2.7911082864934267 5 0.4129964928651793 1.6881713599569506 6 0.23073459844190933 1.1317855165456496 7 0.13107753712083825 0.7501126210354072 8 0.08723796767976755 0.5705525972528203 9 0.05570642146534737 0.40987169730165757 >10 0.184217819422164 2.2227148254339926 >50 0.002077360307097893 0.10826787864169664 >100 6.268960259771614E-4 0.09042012740113503 >500 3.677106149885151E-5 0.025599396849455478 >1k 1.2250726830562936E-5 0.016715460775447732 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.6316711281994215E-5 2 0.0 2.1755615042658954E-5 0.0 5.4389037606647386E-6 1.6316711281994215E-5 3 0.0 4.351123008531791E-5 0.0 5.4389037606647386E-6 1.6316711281994215E-5 4 0.0 7.07057488886416E-5 0.0 5.4389037606647386E-6 2.7194518803323694E-5 5 0.0 7.614465264930634E-5 0.0 1.0877807521329477E-5 2.7194518803323694E-5 6 0.0 7.614465264930634E-5 0.0 1.0877807521329477E-5 2.7194518803323694E-5 7 0.0 7.614465264930634E-5 0.0 1.0877807521329477E-5 2.7194518803323694E-5 8 0.0 8.158355640997107E-5 0.0 1.0877807521329477E-5 3.807232632465317E-5 9 0.0 1.4685040153794793E-4 0.0 1.0877807521329477E-5 3.807232632465317E-5 10-11 5.4389037606647386E-6 1.4685040153794793E-4 0.0 2.7194518803323694E-5 3.807232632465317E-5 12-13 1.6316711281994215E-5 1.4685040153794793E-4 0.0 2.9913970683656063E-5 4.079177820498554E-5 14-15 2.1755615042658954E-5 1.686060165806069E-4 0.0 3.807232632465317E-5 6.254739324764449E-5 16-17 2.9913970683656063E-5 1.7404492034127163E-4 0.0 4.079177820498554E-5 9.246136393130055E-5 18-19 3.263342256398843E-5 1.9036163162326585E-4 0.0 4.351123008531791E-5 9.79002676919653E-5 20-21 3.807232632465317E-5 2.0667834290526006E-4 0.0 4.351123008531791E-5 1.0333917145263004E-4 22-23 5.438903760664739E-5 2.583479286315751E-4 0.0 4.6230681965650275E-5 1.1421697897395951E-4 24-25 8.430300829030344E-5 2.773840917939017E-4 0.0 7.342520076897396E-5 1.3053369025595372E-4 26-27 8.702246017063582E-5 2.828229955545664E-4 0.0 1.5772820905927742E-4 1.3053369025595372E-4 28-29 8.702246017063582E-5 2.828229955545664E-4 0.0 5.30293116664812E-4 1.3053369025595372E-4 30-31 9.518081581163292E-5 2.991397068365606E-4 0.0 0.0019471275463179764 1.3053369025595372E-4 32-33 1.0333917145263003E-4 2.991397068365606E-4 0.0 0.00499291365229023 1.4413094965761558E-4 34-35 1.1421697897395951E-4 3.508092925628756E-4 0.0 0.009131919414156097 1.5228930529861268E-4 36-37 1.2509478649528897E-4 4.024788782891906E-4 0.0 0.015188138751656283 1.5228930529861268E-4 38-39 1.2509478649528897E-4 4.0791778204985537E-4 0.0 0.027330491397340312 1.5228930529861268E-4 40-41 1.3597259401661846E-4 4.2967339709251435E-4 0.0 0.06337410661926554 1.5228930529861268E-4 42-43 1.3597259401661846E-4 4.4870956025484094E-4 0.0 0.075217319558113 1.5500875717894505E-4 44-45 1.4141149777728318E-4 5.221347610238149E-4 0.0 0.0923553053079676 1.6044766093960977E-4 46-47 1.4685040153794793E-4 5.710848948697975E-4 0.0 0.11190000597191632 1.7132546846093926E-4 48-49 1.4685040153794793E-4 5.710848948697975E-4 0.0 0.1292392311609155 1.849227278626011E-4 50-51 1.4685040153794793E-4 6.091572211944507E-4 0.0 0.14610255227085656 1.849227278626011E-4 52-53 1.5228930529861268E-4 6.091572211944507E-4 0.0 0.17607635089587992 1.958005353839306E-4 54-55 1.6316711281994214E-4 6.091572211944507E-4 0.0 0.24940093194528157 2.0667834290526006E-4 56-57 1.6316711281994214E-4 6.145961249551154E-4 0.0 0.3315501343463618 2.0667834290526006E-4 58-59 1.6316711281994214E-4 6.173155768354478E-4 0.0 0.4184175857598187 2.0667834290526006E-4 60-61 1.6316711281994214E-4 6.254739324764449E-4 0.0 0.44382270522588363 2.0667834290526006E-4 62-63 1.6316711281994214E-4 6.363517399977744E-4 0.0 0.4584451979864308 2.2843395794791901E-4 64-65 1.6316711281994214E-4 6.961796813650865E-4 0.0 0.4686621787008395 2.2843395794791901E-4 66-67 1.6316711281994214E-4 7.07057488886416E-4 0.0 0.4746395339338101 2.3387286170858376E-4 68-69 1.686060165806069E-4 7.152158445274131E-4 0.0 0.48047003876524264 2.3931176546924848E-4 70-71 1.7404492034127163E-4 7.179352964077455E-4 0.0 0.4856070833671905 2.583479286315751E-4 72-73 1.7404492034127163E-4 7.315325558094073E-4 0.0 0.48989022007871397 3.1545641811855484E-4 74-75 1.7404492034127163E-4 7.50568718971734E-4 0.0 0.49349077436827404 3.208953218792196E-4 76-77 1.7404492034127163E-4 7.940799490570517E-4 0.0 0.49677587223971553 3.2361477375955194E-4 78-79 1.7404492034127163E-4 8.049577565783812E-4 0.0 0.4996041021952612 3.2905367752021663E-4 80-81 1.7404492034127163E-4 8.049577565783812E-4 0.0 0.5009583892316667 3.508092925628756E-4 82-83 1.76764372221604E-4 8.10396660339046E-4 0.0 0.501434293310725 3.807232632465317E-4 84-85 1.7948382410193638E-4 8.10396660339046E-4 0.0 0.5019455502642274 3.807232632465317E-4 86-87 1.7948382410193638E-4 8.239939197407079E-4 0.0 0.5021767036740556 3.916010707678612E-4 88-89 1.7948382410193638E-4 8.8382186110802E-4 0.0 0.502261006682346 3.916010707678612E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 21230 0.0 48.20781 1 GTATCAA 37425 0.0 33.09361 1 ATCAACG 46455 0.0 29.483398 3 TCAACGC 46930 0.0 29.147146 4 CAACGCA 47875 0.0 28.553658 5 TATCAAC 47990 0.0 28.233753 2 AACGCAG 50035 0.0 27.325216 6 ACGCAGA 59610 0.0 22.892502 7 CGCAGAG 60485 0.0 22.568604 8 GCAGAGT 71645 0.0 19.071249 9 GAGTACT 40790 0.0 18.832354 12-13 ACCGAAC 1905 0.0 18.618052 8 TGGTATC 10495 0.0 17.81302 2 GTGGTAT 10355 0.0 17.803106 1 CAGAGTA 70035 0.0 17.761887 10-11 GTACTTT 45885 0.0 16.78869 14-15 AGAGTAC 65095 0.0 16.498499 10-11 CCGAACC 2145 0.0 15.526687 9 GGACCGA 2585 0.0 15.058959 6 TACATGG 47515 0.0 14.408277 2 >>END_MODULE