Basic Statistics
Measure | Value |
---|---|
Filename | SRR2140396_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 11206070 |
Sequences flagged as poor quality | 0 |
Sequence length | 19-101 |
%GC | 43 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 18215 | 0.0 | 55.952904 | 1 |
GTATCAA | 33380 | 0.0 | 37.78699 | 1 |
ATCAACG | 38360 | 0.0 | 32.3854 | 3 |
TCAACGC | 38445 | 0.0 | 32.279766 | 4 |
CAACGCA | 39270 | 0.0 | 31.568445 | 5 |
TATCAAC | 40100 | 0.0 | 31.001713 | 2 |
AACGCAG | 40250 | 0.0 | 30.741478 | 6 |
ACGCAGA | 44950 | 0.0 | 27.517517 | 7 |
GTGGTAT | 7630 | 0.0 | 27.259178 | 1 |
CGCAGAG | 45435 | 0.0 | 27.224264 | 8 |
TGGTATC | 7305 | 0.0 | 26.281792 | 2 |
GCAGAGT | 52295 | 0.0 | 23.570372 | 9 |
GAGTACT | 32925 | 0.0 | 22.590828 | 12-13 |
GTACATG | 34850 | 0.0 | 21.700975 | 1 |
CAGAGTA | 51765 | 0.0 | 21.519863 | 10-11 |
TACATGG | 34760 | 0.0 | 21.147614 | 2 |
ACATGGG | 34270 | 0.0 | 20.743399 | 3 |
GTACTTT | 36720 | 0.0 | 20.197584 | 14-15 |
AGAGTAC | 48315 | 0.0 | 18.865644 | 10-11 |
CATGGGG | 24745 | 0.0 | 18.365536 | 4 |