##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140396_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11206070 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.628326166086772 32.0 18.0 33.0 18.0 33.0 2 29.430782781117735 31.0 27.0 33.0 18.0 33.0 3 30.45211363127305 33.0 29.0 33.0 25.0 33.0 4 30.18904504433758 33.0 30.0 33.0 25.0 33.0 5 30.853321191104463 33.0 32.0 33.0 27.0 33.0 6 33.82774255381236 37.0 33.0 38.0 26.0 38.0 7 35.245256365523325 37.0 35.0 38.0 29.0 38.0 8 35.069032229853995 38.0 35.0 38.0 29.0 38.0 9 35.78637773992131 38.0 36.0 38.0 31.0 38.0 10-11 36.03881293798807 38.0 37.0 38.0 32.0 38.0 12-13 36.096192509952196 38.0 37.0 38.0 32.0 38.0 14-15 36.17539413906927 38.0 37.0 38.0 33.0 38.0 16-17 36.17413620475332 38.0 37.0 38.0 33.0 38.0 18-19 36.22522266949966 38.0 37.0 38.0 33.0 38.0 20-21 36.25720822635744 38.0 37.0 38.0 33.0 38.0 22-23 36.26522536428848 38.0 37.0 38.0 33.0 38.0 24-25 36.2602503166467 38.0 37.0 38.0 33.0 38.0 26-27 36.20217880315205 38.0 37.0 38.0 33.0 38.0 28-29 36.180079907563396 38.0 37.0 38.0 33.0 38.0 30-31 36.18103680704378 38.0 37.0 38.0 33.0 38.0 32-33 36.157969183202965 38.0 37.0 38.0 33.0 38.0 34-35 36.12425393681703 38.0 37.0 38.0 33.0 38.0 36-37 36.09607268103125 38.0 37.0 38.0 33.0 38.0 38-39 36.074393547050164 38.0 37.0 38.0 32.0 38.0 40-41 36.07338658408051 38.0 37.0 38.0 32.0 38.0 42-43 36.029729521614435 38.0 37.0 38.0 31.5 38.0 44-45 35.97073194799836 38.0 37.0 38.0 31.0 38.0 46-47 35.92376174185765 38.0 37.0 38.0 31.0 38.0 48-49 35.86373708878311 38.0 37.0 38.0 31.0 38.0 50-51 35.82254102348503 38.0 37.0 38.0 31.0 38.0 52-53 35.7990658005581 38.0 37.0 38.0 31.0 38.0 54-55 35.76141616434444 38.0 37.0 38.0 31.0 38.0 56-57 35.72638971340702 38.0 37.0 38.0 29.5 38.0 58-59 35.69595256229501 38.0 37.0 38.0 29.0 38.0 60-61 35.69398583689313 38.0 37.0 38.0 29.0 38.0 62-63 35.69111971365061 38.0 37.0 38.0 29.0 38.0 64-65 35.65709858807716 38.0 36.0 38.0 29.0 38.0 66-67 35.636373554382274 38.0 36.0 38.0 29.0 38.0 68-69 35.62935383679775 38.0 36.0 38.0 29.0 38.0 70-71 35.59469825754114 38.0 36.0 38.0 29.0 38.0 72-73 35.582899725159464 38.0 36.0 38.0 29.0 38.0 74-75 35.597152074802615 38.0 36.0 38.0 29.0 38.0 76-77 35.56092937634732 38.0 36.0 38.0 29.0 38.0 78-79 35.55991020710168 38.0 36.0 38.0 29.0 38.0 80-81 35.532500513862836 38.0 36.0 38.0 29.0 38.0 82-83 35.512210457350875 38.0 36.0 38.0 29.0 38.0 84-85 35.48482780223309 38.0 36.0 38.0 29.0 38.0 86-87 35.45401895859001 38.0 36.0 38.0 29.0 38.0 88-89 35.37467806404516 38.0 36.0 38.0 29.0 38.0 90-91 35.39850823554173 38.0 36.0 38.0 29.0 38.0 92-93 35.43393483357592 38.0 36.0 38.0 29.0 38.0 94-95 35.40657058740774 38.0 36.0 38.0 29.0 38.0 96-97 35.40639539947776 38.0 36.0 38.0 29.0 38.0 98-99 35.43630223237715 38.0 36.0 38.0 29.0 38.0 100-101 34.84898174455182 37.5 35.0 38.0 27.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 12.0 19 45.0 20 256.0 21 1224.0 22 5165.0 23 14610.0 24 31267.0 25 56914.0 26 91318.0 27 132489.0 28 181253.0 29 236306.0 30 297674.0 31 371774.0 32 462105.0 33 587972.0 34 782324.0 35 1154904.0 36 2211578.0 37 4586879.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.591668622451934 18.47418408059204 13.883100855161533 21.05104644179449 2 15.02254581668685 20.85971263788286 43.380409010473784 20.7373325349565 3 18.162670530876046 28.091464179703586 29.809154985006792 23.936710304413577 4 12.32504430670053 20.38312579533428 38.513409804408006 28.778420093557187 5 14.1575668249768 37.73360149094968 35.30528166102965 12.803550023043867 6 28.791083760854608 38.97342243980271 19.06431960535674 13.171174193985937 7 25.75554141639308 33.96302182656364 23.051703228696592 17.229733528346692 8 23.87538182431486 37.35938647536558 21.063664603201655 17.701567097117902 9 25.127188003550582 17.8073467285392 21.551476349960634 35.51398891794958 10-11 23.59230756188387 27.50225101217465 28.94315313040165 19.962288295539828 12-13 24.72327497508047 25.05935176203611 29.125366877058596 21.092006385824824 14-15 21.850578693468215 26.440460256224803 27.053943063990875 24.655017986316103 16-17 21.02348290020345 29.804247145006872 27.67544979421419 21.49682016057549 18-19 21.03978022625238 28.54714453862951 29.807184856064616 20.605890379053495 20-21 21.8845248181995 27.573885337614584 29.90289769318159 20.638692151004324 22-23 21.650944762275852 27.524373127763468 29.736173032172335 21.08850907778834 24-25 21.38957244954519 27.69995153339242 29.820695866235734 21.089780150826655 26-27 21.326944405895055 27.814505713748915 29.775584809646077 21.08296507070995 28-29 21.236213750810062 27.815593108804553 29.81675166817545 21.131441472209936 30-31 21.568902400020885 27.65120937956932 29.711711145511266 21.068177074898532 32-33 21.318319023292105 27.837664561145054 29.6894132445708 21.154603170992043 34-35 21.490458997168812 27.7498210865546 29.68997465130959 21.069745264966997 36-37 21.354425906755083 27.789127076973575 29.68066893214059 21.17577808413075 38-39 21.209635973993638 27.823570014326766 29.793640916057758 21.17315309562184 40-41 21.492677636102943 27.684040540050425 29.64531283233042 21.177968991516217 42-43 21.43806802560887 27.76546958189794 29.481369337763734 21.315093054729456 44-45 21.434978059121867 27.890634810297403 29.330778961926796 21.343608168653933 46-47 21.577380862221663 27.879160354933813 28.99767639369889 21.545782389145636 48-49 21.487680181108598 27.99567345834874 28.95240752480201 21.56423883574065 50-51 21.441255793247237 28.131915741441382 28.904740299475794 21.52208816583559 52-53 21.62641578950833 28.02499778430725 28.848892043912404 21.49969438227202 54-55 21.567670143616237 27.937601250889653 28.83624377314079 21.65848483235332 56-57 21.602931458227538 28.05348028258823 28.78391858375104 21.5596696754332 58-59 21.512006254359296 28.12950273783984 28.887631085481907 21.470859922318958 60-61 21.60526772337495 28.127935219017136 28.801845805058086 21.464951252549827 62-63 21.471652146081695 28.27152305370142 28.809765682296057 21.447059117920826 64-65 21.45273451680454 28.256450976249585 28.722394282376218 21.56842022456966 66-67 21.50307837997089 28.31569475678437 28.586095545869895 21.59513131737484 68-69 21.46173883843759 28.25427557112737 28.665308081483637 21.618677508951407 70-71 21.52020105696409 28.036828656564598 28.67049441884407 21.772475867627243 72-73 21.53014986663964 27.997383261997477 28.6378815478819 21.834585323480983 74-75 21.429362595038544 28.12582168382053 28.634847222099648 21.80996849904128 76-77 21.695262410576046 28.058522958863424 28.52537052092329 21.720844109637238 78-79 21.66733277738367 28.09114310453007 28.412158800085365 21.8293653180009 80-81 21.597893459717437 28.140014963142214 28.419694738563877 21.842396838576473 82-83 21.66344074366558 28.098324503133153 28.492650464519333 21.74558428868194 84-85 21.817529891103487 28.114196112725654 28.43024355567614 21.638030440494724 86-87 21.612655100301122 28.187320265249383 28.499668898364494 21.700355736085 88-89 21.72182276634254 28.233397773548997 28.43302704388051 21.611752416227954 90-91 21.694081501050015 28.2596680073756 28.453634477185847 21.59261601438854 92-93 21.721307456974912 28.23412001583705 28.42234698567068 21.62222554151736 94-95 21.66131707549801 28.2775721016586 28.441571285841594 21.619539537001796 96-97 21.69400500845681 28.239196928177883 28.46558105956909 21.601217003796222 98-99 21.777893555826637 28.88668399810547 28.590641229791515 20.744781216276376 100-101 22.384556806711906 31.324023842852018 26.09196615936496 20.199453191071118 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2769.0 1 2473.5 2 3015.0 3 3993.0 4 4709.5 5 6996.5 6 9711.5 7 13349.0 8 18289.0 9 20865.0 10 19046.0 11 16423.0 12 16786.0 13 20075.0 14 27759.5 15 38090.5 16 47480.5 17 55195.5 18 58842.0 19 57384.5 20 53687.5 21 50110.5 22 49147.0 23 53512.0 24 63834.0 25 80226.5 26 101740.0 27 125661.0 28 152990.0 29 183072.0 30 210932.5 31 239569.0 32 269907.5 33 298535.5 34 325250.5 35 348784.0 36 373883.0 37 396646.0 38 413782.0 39 427912.5 40 440857.5 41 452810.0 42 459082.0 43 464084.5 44 473409.5 45 476908.5 46 468004.0 47 456199.5 48 445514.5 49 432860.5 50 417619.0 51 398776.5 52 376159.5 53 351913.5 54 326947.5 55 300625.0 56 272207.0 57 243085.5 58 214780.0 59 184687.0 60 152397.5 61 122453.0 62 94994.0 63 71583.0 64 53507.0 65 39395.0 66 28657.0 67 21332.0 68 15942.0 69 11600.5 70 8441.0 71 5958.0 72 4154.0 73 2866.0 74 1882.5 75 1160.5 76 704.5 77 423.5 78 267.0 79 179.5 80 124.0 81 87.5 82 56.5 83 33.5 84 22.5 85 20.5 86 19.0 87 16.5 88 10.0 89 4.5 90 4.5 91 5.0 92 4.5 93 3.5 94 2.5 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0029269851071785204 4 8.031361574575208E-4 5 0.05079390009164676 6 0.0 7 0.0 8 0.0 9 1.8739843674008818E-4 10-11 0.0 12-13 0.0 14-15 4.5511048922592843E-4 16-17 8.923735082861343E-6 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 1.0266601317517411E-4 28-29 0.0 30-31 1.788001091217066E-5 32-33 0.0 34-35 2.6938027182804058E-5 36-37 0.0 38-39 0.0 40-41 0.0 42-43 1.1921496760424959E-4 44-45 2.5409977278398316E-4 46-47 1.0253181340794544E-4 48-49 0.001983491615494228 50-51 6.821250735060821E-4 52-53 0.0051323208669768255 54-55 0.0011376307615357918 56-57 0.002769334716872981 58-59 0.007855786451104666 60-61 0.008624605085808933 62-63 0.007185019595125877 64-65 0.010333176399982156 66-67 0.004762085791565265 68-69 0.004350193743517855 70-71 0.004649892568000321 72-73 0.006858165984594023 74-75 0.005258499918642076 76-77 0.002561266441907631 78-79 1.8626230362298805E-4 80-81 2.7960371550321946E-4 82-83 0.0 84-85 0.0 86-87 7.760567426082535E-4 88-89 1.680805226721576E-5 90-91 7.366527169197173E-5 92-93 1.1467812973961128E-5 94-95 6.790690207493892E-4 96-97 2.648724403757422E-4 98-99 5.472698894295916E-5 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 181.0 20-21 610.0 22-23 1286.0 24-25 1942.0 26-27 3717.0 28-29 7921.0 30-31 19846.0 32-33 25983.0 34-35 35478.0 36-37 55719.0 38-39 63466.0 40-41 67103.0 42-43 77766.0 44-45 92708.0 46-47 92751.0 48-49 85072.0 50-51 75953.0 52-53 65006.0 54-55 69846.0 56-57 70901.0 58-59 80573.0 60-61 81419.0 62-63 79184.0 64-65 86084.0 66-67 92486.0 68-69 93512.0 70-71 98307.0 72-73 85056.0 74-75 86336.0 76-77 90990.0 78-79 95399.0 80-81 97079.0 82-83 92351.0 84-85 90806.0 86-87 94458.0 88-89 99444.0 90-91 103616.0 92-93 104110.0 94-95 112666.0 96-97 179558.0 98-99 937012.0 100-101 7412369.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.72608762398161 #Duplication Level Percentage of deduplicated Percentage of total 1 88.84602000979199 74.38729656381867 2 7.644287252578258 12.800525286645058 3 1.9475985593286358 4.891944229040692 4 0.7034568859344107 2.3559077148575085 5 0.3367045559863636 1.4095477578954052 6 0.1806742735469528 0.9076290035034837 7 0.104614098246167 0.613125040952368 8 0.06268353645977012 0.4198597812969408 9 0.0397584375620569 0.299593658440204 >10 0.13129809569354414 1.6685468637765613 >50 0.0023260792139769048 0.12830756099814483 >100 5.241189337914184E-4 0.07635089177192733 >500 3.6066538727364744E-5 0.022661741745744507 >1k 1.803018528519775E-5 0.018703905257276474 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.7847470165722683E-5 0.0 0.0 0.0 3 0.0 1.7847470165722683E-5 0.0 0.0 0.0 4 0.0 5.354241049716805E-5 0.0 1.7847470165722683E-5 0.0 5 0.0 6.246614558002939E-5 0.0 1.7847470165722683E-5 0.0 6 0.0 6.246614558002939E-5 0.0 1.7847470165722683E-5 8.923735082861342E-6 7 0.0 6.246614558002939E-5 0.0 1.7847470165722683E-5 8.923735082861342E-6 8 0.0 7.138988066289073E-5 0.0 1.7847470165722683E-5 8.923735082861342E-6 9 0.0 1.3385602624292012E-4 0.0 8.031361574575208E-5 8.923735082861342E-6 10-11 0.0 1.3385602624292012E-4 0.0 8.923735082861342E-5 8.923735082861342E-6 12-13 0.0 1.3831789378435078E-4 0.0 9.816108591147476E-5 8.923735082861342E-6 14-15 0.0 1.8293656919865753E-4 0.0 9.816108591147476E-5 2.2309337707153355E-5 16-17 0.0 1.9632217182294953E-4 0.0 1.070848209943361E-4 3.1233072790014695E-5 18-19 0.0 2.2309337707153356E-4 0.0 1.2939415870148947E-4 4.461867541430671E-5 20-21 0.0 2.4986458232011756E-4 0.0 1.695509665743655E-4 4.461867541430671E-5 22-23 0.0 2.900213901929936E-4 0.0 1.8739843674008818E-4 4.461867541430671E-5 24-25 0.0 3.034069928172856E-4 0.0 2.3201711215439487E-4 4.461867541430671E-5 26-27 4.461867541430671E-6 3.034069928172856E-4 0.0 3.034069928172856E-4 4.461867541430671E-5 28-29 8.923735082861342E-6 3.034069928172856E-4 0.0 7.674412171260754E-4 4.461867541430671E-5 30-31 1.3385602624292012E-5 3.4802566823159236E-4 0.0 0.002047997201516678 4.908054295573738E-5 32-33 2.6771205248584027E-5 3.569494033144537E-4 0.0 0.004671575315877913 7.138988066289073E-5 34-35 3.569494033144537E-5 4.5957235676735914E-4 0.0 0.00845077712346969 8.031361574575208E-5 36-37 3.569494033144537E-5 5.621953102202645E-4 0.0 0.01455907378768828 8.031361574575208E-5 38-39 3.569494033144537E-5 5.711190453031259E-4 0.0 0.026824747659081195 9.369921837004409E-5 40-41 4.461867541430671E-5 6.514326610488779E-4 0.0 0.06557606725640658 9.816108591147476E-5 42-43 4.461867541430671E-5 6.603563961317394E-4 0.0 0.07716799912904346 1.070848209943361E-4 44-45 4.461867541430671E-5 7.228225417117687E-4 0.0 0.09470313856686599 1.2047042361862812E-4 46-47 4.461867541430671E-5 7.763649522089368E-4 0.0 0.11445136430523814 1.3831789378435078E-4 48-49 4.461867541430671E-5 7.763649522089368E-4 0.0 0.13278071616543535 1.4277976132578147E-4 50-51 4.461867541430671E-5 8.522167004132582E-4 0.0 0.15065049566886518 1.4277976132578147E-4 52-53 5.354241049716805E-5 8.566785679546889E-4 0.0 0.1826287003382988 1.4724162886721215E-4 54-55 5.354241049716805E-5 8.745260381204116E-4 0.0 0.25990824615587804 1.6508909903293484E-4 56-57 5.354241049716805E-5 9.012972433689955E-4 0.0 0.3463569297710973 1.7847470165722684E-4 58-59 5.354241049716805E-5 9.057591109104261E-4 0.0 0.43960103765191544 1.7847470165722684E-4 60-61 5.354241049716805E-5 9.102209784518569E-4 0.0 0.46450272040064 1.7847470165722684E-4 62-63 5.354241049716805E-5 9.102209784518569E-4 0.0 0.47883870081125673 1.8739843674008818E-4 64-65 5.354241049716805E-5 0.0010083820643633317 0.0 0.4884317160253327 1.8739843674008818E-4 66-67 5.354241049716805E-5 0.001017305799446193 0.0 0.49407597846524254 1.9186030428151884E-4 68-69 5.354241049716805E-5 0.0010530007397776384 0.0 0.4991803549326391 1.9632217182294953E-4 70-71 5.354241049716805E-5 0.001070848209943361 0.0 0.5042178033869145 2.007840393643802E-4 72-73 5.354241049716805E-5 0.001070848209943361 0.0 0.5082067129689534 2.141696419886722E-4 74-75 5.354241049716805E-5 0.001124390620440529 0.0 0.511289863440082 2.141696419886722E-4 76-77 5.354241049716805E-5 0.0011779330309376972 0.0 0.514542564877785 2.186315095301029E-4 78-79 5.354241049716805E-5 0.001204704236186281 0.0 0.5172062998000191 2.2309337707153356E-4 80-81 5.354241049716805E-5 0.0012136279712691425 0.0 0.5186117880755697 2.2309337707153356E-4 82-83 5.354241049716805E-5 0.001222551706352004 0.0 0.519142750313 2.320171121543949E-4 84-85 5.354241049716805E-5 0.001222551706352004 0.0 0.5196692506828888 2.320171121543949E-4 86-87 5.354241049716805E-5 0.0012403991765177265 0.0 0.5199101915301261 2.320171121543949E-4 88-89 5.354241049716805E-5 0.0012939415870148947 0.0 0.5199681958081647 2.4094084723725624E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 18215 0.0 55.952904 1 GTATCAA 33380 0.0 37.78699 1 ATCAACG 38360 0.0 32.3854 3 TCAACGC 38445 0.0 32.279766 4 CAACGCA 39270 0.0 31.568445 5 TATCAAC 40100 0.0 31.001713 2 AACGCAG 40250 0.0 30.741478 6 ACGCAGA 44950 0.0 27.517517 7 GTGGTAT 7630 0.0 27.259178 1 CGCAGAG 45435 0.0 27.224264 8 TGGTATC 7305 0.0 26.281792 2 GCAGAGT 52295 0.0 23.570372 9 GAGTACT 32925 0.0 22.590828 12-13 GTACATG 34850 0.0 21.700975 1 CAGAGTA 51765 0.0 21.519863 10-11 TACATGG 34760 0.0 21.147614 2 ACATGGG 34270 0.0 20.743399 3 GTACTTT 36720 0.0 20.197584 14-15 AGAGTAC 48315 0.0 18.865644 10-11 CATGGGG 24745 0.0 18.365536 4 >>END_MODULE