##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140394_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 16699206 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.04636537809043 30.0 18.0 32.0 18.0 33.0 2 30.178945813351845 32.0 29.0 33.0 25.0 33.0 3 30.936325056412862 33.0 31.0 33.0 27.0 33.0 4 31.09424675640267 33.0 31.0 33.0 27.0 34.0 5 31.505231985281217 33.0 32.0 33.0 28.0 34.0 6 34.55042102001736 37.0 34.0 38.0 28.0 38.0 7 35.27611402602016 38.0 35.0 38.0 29.0 38.0 8 35.425361421375364 38.0 36.0 38.0 29.0 38.0 9 36.06079229156165 38.0 37.0 38.0 31.0 38.0 10-11 36.1002463530302 38.0 37.0 38.0 32.0 38.0 12-13 36.13318920672037 38.0 37.0 38.0 33.0 38.0 14-15 36.19413183477107 38.0 37.0 38.0 33.0 38.0 16-17 36.21375222869878 38.0 37.0 38.0 33.0 38.0 18-19 36.27147856610667 38.0 37.0 38.0 33.0 38.0 20-21 36.30454686297669 38.0 37.0 38.0 33.0 38.0 22-23 36.32284899106567 38.0 37.0 38.0 33.0 38.0 24-25 36.31011623124503 38.0 37.0 38.0 33.0 38.0 26-27 36.26287098640217 38.0 37.0 38.0 33.0 38.0 28-29 36.24143674068588 38.0 37.0 38.0 33.0 38.0 30-31 36.23709150769377 38.0 37.0 38.0 33.0 38.0 32-33 36.21126951402611 38.0 37.0 38.0 33.0 38.0 34-35 36.17825146361496 38.0 37.0 38.0 33.0 38.0 36-37 36.15435177553874 38.0 37.0 38.0 33.0 38.0 38-39 36.13925896478223 38.0 37.0 38.0 33.0 38.0 40-41 36.13254624388162 38.0 37.0 38.0 33.0 38.0 42-43 36.10119843600373 38.0 37.0 38.0 33.0 38.0 44-45 36.051878663721425 38.0 37.0 38.0 32.0 38.0 46-47 36.008628241646235 38.0 37.0 38.0 31.0 38.0 48-49 35.955791544536794 38.0 37.0 38.0 31.0 38.0 50-51 35.92343641303121 38.0 37.0 38.0 31.0 38.0 52-53 35.89698766012327 38.0 37.0 38.0 31.0 38.0 54-55 35.86302114833184 38.0 37.0 38.0 31.0 38.0 56-57 35.82873912130623 38.0 37.0 38.0 31.0 38.0 58-59 35.802858642190486 38.0 37.0 38.0 31.0 38.0 60-61 35.80047123417947 38.0 37.0 38.0 31.0 38.0 62-63 35.794001617102836 38.0 37.0 38.0 31.0 38.0 64-65 35.758045585306206 38.0 37.0 38.0 30.5 38.0 66-67 35.73882922576256 38.0 37.0 38.0 29.5 38.0 68-69 35.73402704735582 38.0 37.0 38.0 29.5 38.0 70-71 35.70327541403506 38.0 37.0 38.0 29.0 38.0 72-73 35.69165136722965 38.0 37.0 38.0 29.0 38.0 74-75 35.70249698570693 38.0 37.0 38.0 29.0 38.0 76-77 35.66452549667319 38.0 36.5 38.0 29.0 38.0 78-79 35.666411396191805 38.0 36.0 38.0 29.0 38.0 80-81 35.64248654576012 38.0 36.0 38.0 29.0 38.0 82-83 35.62512266532446 38.0 36.0 38.0 29.0 38.0 84-85 35.59778321715172 38.0 36.0 38.0 29.0 38.0 86-87 35.56835701414502 38.0 36.0 38.0 29.0 38.0 88-89 35.49030441939168 38.0 36.0 38.0 29.0 38.0 90-91 35.51300335018692 38.0 36.0 38.0 29.0 38.0 92-93 35.550398320115406 38.0 36.0 38.0 29.0 38.0 94-95 35.52361633781731 38.0 36.0 38.0 29.0 38.0 96-97 35.52021282012991 38.0 36.0 38.0 29.0 38.0 98-99 35.54645973335941 38.0 36.0 38.0 29.0 38.0 100-101 34.96962475913321 38.0 35.0 38.0 28.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 3.0 18 26.0 19 47.0 20 282.0 21 1592.0 22 6842.0 23 19929.0 24 43883.0 25 80500.0 26 127685.0 27 185159.0 28 254481.0 29 333728.0 30 422638.0 31 526407.0 32 657253.0 33 834770.0 34 1109574.0 35 1625229.0 36 3096329.0 37 7372849.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.67284432565237 20.31059440790179 16.718794893601526 23.297766372844315 2 14.351388922323613 22.656556245847856 41.3188387519742 21.673216079854335 3 17.687424241525964 26.854165914359307 31.77745092455805 23.68095891955668 4 12.202114612576532 19.250944964500956 39.195073489254476 29.351866933668042 5 13.295054350551547 37.50582593743595 36.12150111977229 13.07761859224022 6 28.590035957398214 39.52801109226391 18.91251596033967 12.969436989998206 7 25.211665752251932 33.57042843833413 23.65888533862029 17.55902047079364 8 23.61281728005511 37.58160118511024 21.37964523582738 17.42593629900727 9 24.74936636091304 17.40254832948334 21.734756357724258 36.11332895187936 10-11 23.417745131115815 27.500987172683537 29.357862882822094 19.723404813378554 12-13 24.335935492980923 24.985837650005635 29.542590228541403 21.13563662847204 14-15 21.477290219353236 26.46611732220189 27.26254273766775 24.794049720777128 16-17 20.902707288292035 29.623334362624128 27.96176679236829 21.512191556715546 18-19 20.880882001216104 28.638358614176028 29.925398848304525 20.555360536303343 20-21 21.71743153438697 27.715685001963465 29.8779598117889 20.688923651860666 22-23 21.4425797291408 27.622006985011694 29.772859258368477 21.16255402747903 24-25 21.223884415994036 27.811467072643214 29.83034311351415 21.134305397848593 26-27 21.201732262304112 27.97218366447006 29.738062151508792 21.088021921717036 28-29 21.128690599931343 27.99202465561912 29.76109085748586 21.118193886963677 30-31 21.462243466453174 27.834261005461176 29.666271986597277 21.037223541488377 32-33 21.24073700548279 27.96116514190677 29.614322974390088 21.18377487822035 34-35 21.357546275090826 27.917174489021473 29.65218779556647 21.07309144032123 36-37 21.28777428651825 27.94405033582772 29.65077274168505 21.117402635968986 38-39 21.161563528651474 27.957446055478773 29.74526280236945 21.135727613500304 40-41 21.435365452560163 27.81511170419664 29.596460228740412 21.153062614502787 42-43 21.35957665622951 27.90906864315086 29.442863953838668 21.288490746780965 44-45 21.35714696259568 28.059818694252332 29.274331280779737 21.30870306237225 46-47 21.479403152598543 27.996247410105333 28.992417785921898 21.531931651374222 48-49 21.39476554038871 28.113480873451486 29.010140341938616 21.48161324422119 50-51 21.35530068271427 28.191017892406773 28.933823764438372 21.51985766044059 52-53 21.516268227931903 28.15246013079566 28.85542922937363 21.475842411898803 54-55 21.487109357468192 28.06026853538488 28.84842767976946 21.604194427377465 56-57 21.524712109465376 28.18370440126481 28.76222454041021 21.5293589488596 58-59 21.419648244582365 28.24524705985644 28.890566398671446 21.444538296889746 60-61 21.535541465386455 28.219357545315894 28.842575858667974 21.40252513062968 62-63 21.44318423697094 28.387236093561235 28.760947965394678 21.408631704073148 64-65 21.37418554520627 28.365006593931653 28.716535478462575 21.544272382399505 66-67 21.431039949184996 28.418677868475058 28.590919739670497 21.559362442669457 68-69 21.43486528434452 28.359458610276363 28.610564166072987 21.59511193930613 70-71 21.43566907859015 28.105106364108284 28.706443530238307 21.752781027063257 72-73 21.47193356343245 28.10211194694501 28.673283615053112 21.75267087456943 74-75 21.396941146403776 28.219346843017668 28.61759924188309 21.766112768695468 76-77 21.58618511731695 28.151078280887802 28.524355139276043 21.7383814625192 78-79 21.584716121648952 28.19582444061728 28.414200256293633 21.805259181440135 80-81 21.54906083389344 28.232060310035003 28.435815613413908 21.783063242657658 82-83 21.572078109032848 28.199043768151473 28.497251242201934 21.73162688061375 84-85 21.70629104794832 28.216483088348753 28.45839218264382 21.618833681059105 86-87 21.585407870130773 28.278355368981234 28.464689522904603 21.671547237983393 88-89 21.63454761727837 28.316755554527372 28.401676392131687 21.647020436062576 90-91 21.668943659124782 28.32875625208988 28.455526456728307 21.546773632057032 92-93 21.719829565130855 28.299494484108152 28.42256263935761 21.558113311403385 94-95 21.591724822326267 28.3575106953072 28.443271815274695 21.607492667091837 96-97 21.580921221527202 28.337205966706975 28.503446225286012 21.578426586479814 98-99 21.695672149185917 28.943949179486054 28.61798852671266 20.742390144615367 100-101 22.294282321915535 31.41984625089916 26.08915286990384 20.196718557281464 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 4047.0 1 3790.0 2 4462.5 3 5749.5 4 7002.0 5 9842.5 6 13007.5 7 18123.5 8 23427.5 9 25368.5 10 24212.5 11 22431.5 12 23973.0 13 29619.0 14 42531.5 15 59696.5 16 73003.5 17 79997.5 18 81080.5 19 77592.0 20 72789.0 21 69530.5 22 71139.5 23 80566.5 24 98274.0 25 125837.0 26 161598.0 27 200294.0 28 242985.0 29 289260.0 30 332583.0 31 375166.0 32 419566.0 33 462896.0 34 501664.0 35 535449.0 36 572043.0 37 606169.0 38 629431.0 39 646232.0 40 665123.5 41 681373.5 42 688432.0 43 695151.0 44 705455.5 45 707304.5 46 694573.0 47 678150.5 48 659376.5 49 635029.0 50 609253.0 51 580357.5 52 546302.5 53 510924.5 54 476280.5 55 437993.5 56 396601.0 57 355166.5 58 313671.5 59 268832.5 60 220333.5 61 175830.5 62 136393.5 63 102847.0 64 75987.0 65 55302.0 66 40286.0 67 30190.0 68 22801.0 69 16502.0 70 11865.5 71 8492.0 72 5868.5 73 3946.5 74 2657.0 75 1735.0 76 1110.5 77 694.0 78 428.0 79 266.0 80 173.0 81 111.5 82 66.5 83 40.5 84 27.5 85 22.5 86 20.0 87 21.0 88 18.0 89 11.0 90 7.5 91 6.5 92 4.5 93 2.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0034672307174365056 4 9.940592385051122E-4 5 0.0524515956028089 6 0.0 7 0.0 8 0.0 9 1.8563756863649686E-4 10-11 0.0 12-13 0.0 14-15 5.419419342452569E-4 16-17 3.2935697661313956E-5 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 1.4676918344365734E-4 28-29 0.0 30-31 1.4996960566002089E-5 32-33 0.0 34-35 3.314094312857493E-5 36-37 0.0 38-39 0.0 40-41 0.0 42-43 1.4774913883029285E-4 44-45 2.8226293232600413E-4 46-47 1.1889924828140523E-4 48-49 0.002268806130863223 50-51 7.12417866409628E-4 52-53 0.005633864528714901 54-55 0.0012703346235505208 56-57 0.0032049500274580114 58-59 0.008893420095695033 60-61 0.009183044690070098 62-63 0.00767848973480657 64-65 0.011524813217764378 66-67 0.005095713700013949 68-69 0.004673656554180277 70-71 0.005117061047021033 72-73 0.00773614683972657 74-75 0.005821437914136285 76-77 0.0028656581583337134 78-79 1.7194634485952968E-4 80-81 2.8958370315585423E-4 82-83 0.0 84-85 0.0 86-87 0.0010004819112310478 88-89 7.547847408640949E-6 90-91 9.162170999323717E-5 92-93 7.72652848697651E-6 94-95 7.430228783001263E-4 96-97 3.569417374710178E-4 98-99 6.554521265755072E-5 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 236.0 20-21 881.0 22-23 1686.0 24-25 2587.0 26-27 5259.0 28-29 11490.0 30-31 30060.0 32-33 39276.0 34-35 54053.0 36-37 84061.0 38-39 96744.0 40-41 101644.0 42-43 117546.0 44-45 138660.0 46-47 137227.0 48-49 127461.0 50-51 114470.0 52-53 101510.0 54-55 108179.0 56-57 109115.0 58-59 122434.0 60-61 122924.0 62-63 120140.0 64-65 130501.0 66-67 140295.0 68-69 140863.0 70-71 146327.0 72-73 129468.0 74-75 131751.0 76-77 138720.0 78-79 143996.0 80-81 145602.0 82-83 138145.0 84-85 137065.0 86-87 143042.0 88-89 150129.0 90-91 154810.0 92-93 155422.0 94-95 167704.0 96-97 265108.0 98-99 1384905.0 100-101 1.100771E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 80.90744450216394 #Duplication Level Percentage of deduplicated Percentage of total 1 87.54968729844042 70.83421466280375 2 8.124981899963931 13.147430443048366 3 2.218259233239107 5.384210574141172 4 0.9134225853136578 2.956107485131515 5 0.4281153449273423 1.731885925511686 6 0.25127658564579197 1.2198087844698093 7 0.14949125145772016 0.8466468591612168 8 0.09467473595702837 0.6127912756160238 9 0.061515148667593854 0.4479330129179142 >10 0.20431278035982062 2.4540933720991527 >50 0.0033902496940106113 0.18564590523393762 >100 7.879387421826533E-4 0.10535241930281147 >500 4.24931042351069E-5 0.022069783398822006 >1k 4.245448726805897E-5 0.05180949716384071 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.1976617331386893E-5 0.0 0.0 0.0 3 0.0 2.3953234662773787E-5 0.0 0.0 0.0 4 0.0 7.78480126540148E-5 0.0 0.0 0.0 5 0.0 8.383632131970826E-5 0.0 0.0 0.0 6 6.587139532262791E-5 8.383632131970826E-5 0.0 0.0 5.988308665693447E-6 7 6.587139532262791E-5 8.98246299854017E-5 0.0 2.9941543328467233E-5 5.988308665693447E-6 8 6.587139532262791E-5 1.1976617331386893E-4 0.0 2.9941543328467233E-5 5.988308665693447E-6 9 6.587139532262791E-5 2.2755572929635098E-4 0.0 5.9883086656934465E-5 1.796492599708034E-5 10-11 6.886554965547463E-5 2.2755572929635098E-4 0.0 6.287724098978119E-5 1.796492599708034E-5 12-13 7.185970398832136E-5 2.2755572929635098E-4 0.0 7.185970398832135E-5 1.796492599708034E-5 14-15 7.185970398832136E-5 2.6647973562335836E-4 0.0 8.383632131970826E-5 2.694738899562051E-5 16-17 1.2575448197956238E-4 2.694738899562051E-4 0.0 8.383632131970826E-5 3.592985199416068E-5 18-19 1.2575448197956238E-4 3.1738035928175265E-4 0.0 8.98246299854017E-5 3.592985199416068E-5 20-21 1.2575448197956238E-4 3.7726344593868715E-4 0.0 1.0479540164963532E-4 3.592985199416068E-5 22-23 1.3174279064525582E-4 4.2816406959708144E-4 0.0 1.287486363124091E-4 6.287724098978119E-5 24-25 1.3773109931094926E-4 4.910413105868627E-4 0.0 1.8863172296934355E-4 7.78480126540148E-5 26-27 1.3773109931094926E-4 5.149945452496364E-4 0.0 2.604914269576649E-4 8.383632131970826E-5 28-29 1.4371940797664273E-4 5.179886995824831E-4 0.0 6.976379595532865E-4 8.383632131970826E-5 30-31 1.4371940797664273E-4 5.988308665693447E-4 0.0 0.0021468086566511007 8.98246299854017E-5 32-33 1.4371940797664273E-4 5.988308665693447E-4 0.0 0.005203840230487605 9.581293865109515E-5 34-35 1.4671356230948945E-4 6.916496508875931E-4 0.0 0.009198042110505135 1.0778955598248204E-4 36-37 1.4970771664233617E-4 7.844684352058415E-4 0.0 0.01549774282681464 1.1377786464817549E-4 38-39 1.4970771664233617E-4 8.024333612029219E-4 0.0 0.028037261172776717 1.1677201898102221E-4 40-41 1.556960253080296E-4 8.742930651912432E-4 0.0 0.0650180613377666 1.1976617331386893E-4 42-43 1.556960253080296E-4 9.012404541868637E-4 0.0 0.07727912333077393 1.1976617331386893E-4 44-45 1.556960253080296E-4 0.001018012473167886 0.0 0.09536680965550098 1.2276032764671566E-4 46-47 1.556960253080296E-4 0.001125802029150368 0.0 0.11545758522890251 1.3174279064525582E-4 48-49 1.5869017964087635E-4 0.001125802029150368 0.0 0.13312908410136387 1.6168433397372307E-4 50-51 1.7665510563795667E-4 0.0012425740481313901 0.0 0.1505430857012004 1.6168433397372307E-4 52-53 1.8563756863649686E-4 0.0012575448197956237 0.0 0.18179906278178734 1.8563756863649686E-4 54-55 1.8563756863649686E-4 0.0012635331284613172 0.0 0.2578296237557642 2.185732662978108E-4 56-57 1.8563756863649686E-4 0.0012695214371270106 0.0 0.3424504135106783 2.2755572929635098E-4 58-59 1.8563756863649686E-4 0.0012755097457927043 0.0 0.43494582916097924 2.3354403796204442E-4 60-61 1.9462003163503704E-4 0.0013084454434540182 0.0 0.46010870217422317 2.3953234662773786E-4 62-63 2.2755572929635098E-4 0.0013473694497810255 0.0 0.47510342707311953 2.4552065529343133E-4 64-65 2.2755572929635098E-4 0.0014701297774277412 0.0 0.4851488148598203 2.4552065529343133E-4 66-67 2.395323466277379E-4 0.0014910888577576683 0.0 0.49088262040722175 2.574972726248182E-4 68-69 2.4552065529343133E-4 0.001536001172750369 0.0 0.4962062268110232 2.724680442890518E-4 70-71 2.4552065529343133E-4 0.0015509719444146027 0.0 0.5016076812274788 3.083978962832125E-4 72-73 2.6348558129051165E-4 0.0015629485617459896 0.0 0.5058294388367925 3.592985199416068E-4 74-75 2.6348558129051165E-4 0.0015869017964087633 0.0 0.5095032662031955 3.592985199416068E-4 76-77 2.6348558129051165E-4 0.0016437907287328512 0.0 0.512560297777032 3.622926742744535E-4 78-79 2.6348558129051165E-4 0.0016767264263941651 0.0 0.5156442767398641 3.6528682860730027E-4 80-81 2.6348558129051165E-4 0.0016857088893927053 0.0 0.5168928390966612 3.68280982940147E-4 82-83 2.6348558129051165E-4 0.0016916971980583987 0.0 0.5174347810309066 4.072049892671544E-4 84-85 2.6647973562335836E-4 0.0017066679697226323 0.0 0.5180725359038029 4.072049892671544E-4 86-87 2.694738899562051E-4 0.0017575685933810265 0.0 0.5182881150157679 4.1319329793284784E-4 88-89 2.754621986218985E-4 0.0018354166060350415 0.0 0.5183420097937591 4.1319329793284784E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 22265 0.0 50.656414 1 GTATCAA 40685 0.0 37.606636 1 ATCAACG 50115 0.0 30.366531 3 TCAACGC 50220 0.0 30.319244 4 CAACGCA 51340 0.0 29.657377 5 AACGCAG 53100 0.0 28.69975 6 TATCAAC 53370 0.0 28.652092 2 ACGCAGA 60200 0.0 25.243183 7 CGCAGAG 60680 0.0 25.029423 8 TGGTATC 10315 0.0 21.566929 2 GTGGTAT 10860 0.0 21.518784 1 GCAGAGT 71030 0.0 21.49779 9 AGAGTAC 64615 0.0 19.740183 10-11 GAGTACT 44440 0.0 19.570131 12-13 CAGAGTA 70225 0.0 18.814869 10-11 AGTACTT 48295 0.0 17.87839 12-13 GTACTTT 49430 0.0 17.625317 14-15 TACATGG 45375 0.0 17.516666 2 GTACATG 46195 0.0 17.514313 1 ACATGGG 45335 0.0 17.017593 3 >>END_MODULE