##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140391_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12980459 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.81587130316424 31.0 18.0 33.0 18.0 33.0 2 29.792779361654315 31.0 29.0 33.0 18.0 33.0 3 30.78563978361628 33.0 30.0 33.0 27.0 33.0 4 30.388750736780572 33.0 31.0 33.0 25.0 33.0 5 31.347708582570153 33.0 32.0 33.0 28.0 34.0 6 34.66048712144925 37.0 34.0 38.0 28.0 38.0 7 35.09009612063795 38.0 35.0 38.0 29.0 38.0 8 35.585610108240395 38.0 36.0 38.0 29.0 38.0 9 36.05965906136293 38.0 37.0 38.0 31.0 38.0 10-11 36.15381193376906 38.0 37.0 38.0 33.0 38.0 12-13 36.17584150914848 38.0 37.0 38.0 33.0 38.0 14-15 36.24921526272684 38.0 37.0 38.0 33.0 38.0 16-17 36.24494434287725 38.0 37.0 38.0 33.0 38.0 18-19 36.27309823943822 38.0 37.0 38.0 33.0 38.0 20-21 36.289202730332036 38.0 37.0 38.0 33.0 38.0 22-23 36.286026349357535 38.0 37.0 38.0 33.0 38.0 24-25 36.270520791578384 38.0 37.0 38.0 33.0 38.0 26-27 36.21117384874644 38.0 37.0 38.0 33.0 38.0 28-29 36.1875590059736 38.0 37.0 38.0 33.0 38.0 30-31 36.18413337939336 38.0 37.0 38.0 33.0 38.0 32-33 36.156577074893974 38.0 37.0 38.0 33.0 38.0 34-35 36.123525954453896 38.0 37.0 38.0 33.0 38.0 36-37 36.0952847847783 38.0 37.0 38.0 33.0 38.0 38-39 36.0840123538 38.0 37.0 38.0 33.0 38.0 40-41 36.0763537109198 38.0 37.0 38.0 32.5 38.0 42-43 36.03125367345964 38.0 37.0 38.0 31.0 38.0 44-45 35.97573543609586 38.0 37.0 38.0 31.0 38.0 46-47 35.930703572306356 38.0 37.0 38.0 31.0 38.0 48-49 35.87269658443729 38.0 37.0 38.0 31.0 38.0 50-51 35.8373785065188 38.0 37.0 38.0 31.0 38.0 52-53 35.80978066321738 38.0 37.0 38.0 31.0 38.0 54-55 35.76968178876845 38.0 37.0 38.0 31.0 38.0 56-57 35.73483383765445 38.0 37.0 38.0 29.5 38.0 58-59 35.70843656164831 38.0 37.0 38.0 29.0 38.0 60-61 35.70884830561829 38.0 37.0 38.0 29.0 38.0 62-63 35.7018928143319 38.0 37.0 38.0 29.0 38.0 64-65 35.66811823179299 38.0 36.5 38.0 29.0 38.0 66-67 35.64871570359739 38.0 36.0 38.0 29.0 38.0 68-69 35.641928484486996 38.0 36.0 38.0 29.0 38.0 70-71 35.612929549285724 38.0 36.0 38.0 29.0 38.0 72-73 35.59877759907701 38.0 36.0 38.0 29.0 38.0 74-75 35.61103966522002 38.0 36.0 38.0 29.0 38.0 76-77 35.56737505604122 38.0 36.0 38.0 29.0 38.0 78-79 35.57039252677548 38.0 36.0 38.0 29.0 38.0 80-81 35.54140852272013 38.0 36.0 38.0 29.0 38.0 82-83 35.514612738209664 38.0 36.0 38.0 29.0 38.0 84-85 35.490852147727914 38.0 36.0 38.0 29.0 38.0 86-87 35.46178252872758 38.0 36.0 38.0 29.0 38.0 88-89 35.38433807949626 38.0 36.0 38.0 29.0 38.0 90-91 35.39984302576876 38.0 36.0 38.0 29.0 38.0 92-93 35.440686822153005 38.0 36.0 38.0 29.0 38.0 94-95 35.40913967975362 38.0 36.0 38.0 29.0 38.0 96-97 35.400794540026 38.0 36.0 38.0 29.0 38.0 98-99 35.4306242207327 38.0 36.0 38.0 29.0 38.0 100-101 34.836830967927376 37.5 35.0 38.0 27.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 5.0 19 16.0 20 181.0 21 1195.0 22 5489.0 23 16102.0 24 35927.0 25 64636.0 26 103117.0 27 150854.0 28 205634.0 29 269248.0 30 340968.0 31 423248.0 32 525947.0 33 666185.0 34 889080.0 35 1302422.0 36 2467828.0 37 5512375.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.86718805552253 19.379938721735495 14.373960119592072 26.3789131031499 2 13.892228310262372 20.90331320333125 43.72339221594552 21.481066270460854 3 17.846448689406866 27.776572936337097 29.678416220475146 24.698562153780895 4 12.047201837979307 20.439476864322987 38.27262794770739 29.240693349990316 5 14.235376912000937 37.5109224161587 35.229725313181206 13.023975358659158 6 28.712567097973963 39.09263147011981 19.075450259501608 13.119351172404611 7 25.72691766909013 33.578265606786324 23.09383666633052 17.600980057793024 8 23.585537306500488 37.55894918661967 21.11210397105372 17.74340953582612 9 24.816225285585663 17.789517158559683 21.65347206113572 35.740785494718935 10-11 23.413717496430596 27.628029178321047 28.910183376412192 20.04806994883617 12-13 24.515567940668966 25.07144971309949 29.222759320202723 21.19022302602882 14-15 21.662735482938544 26.505637461529496 27.073170092845373 24.758456962686587 16-17 20.910098892893416 29.79993193614324 27.7644682400447 21.525500930918653 18-19 20.897600770512046 28.7103329705059 29.80847210410664 20.583594154875417 20-21 21.79693273237478 27.690191917629313 29.87331735406488 20.639557995931018 22-23 21.524838946989966 27.578900459880696 29.760016000808054 21.136244592321283 24-25 21.28314501567049 27.759997115094333 29.78283302360152 21.17402484563366 26-27 21.197672720434753 27.921636386266137 29.734753478916108 21.145937414383003 28-29 21.105276726827924 27.87997137571867 29.810121283133835 21.204630614319573 30-31 21.382336840899864 27.814300889358947 29.72765649048994 21.075705779251255 32-33 21.233829614362687 27.898548848163546 29.686228060363824 21.181393477109946 34-35 21.35291266668397 27.90950724810618 29.69936737672292 21.03821270848693 36-37 21.310987638519823 27.859184223487325 29.662661462280354 21.167166675712497 38-39 21.16377754022783 27.95173797600749 29.72985183055431 21.15463265321037 40-41 21.385141274649662 27.826048005306113 29.644460222723907 21.14435049732032 42-43 21.295584833757975 27.90477153496522 29.46547774841946 21.33416588285734 44-45 21.336803065630082 28.007587308638016 29.33003486588028 21.325574759851623 46-47 21.417521701011584 28.008795040503 29.06905034321497 21.50463291527044 48-49 21.361210189184774 28.110772597358512 29.012095154682722 21.51592205877399 50-51 21.345251050228402 28.22044648603112 28.94474151479703 21.48956094894345 52-53 21.478342034479116 28.200086501506092 28.816558610971942 21.505012853042846 54-55 21.466089927581187 28.101485915075397 28.829847301323447 21.60257685601997 56-57 21.462598308847205 28.160047038257307 28.822466724180607 21.554887928714876 58-59 21.38534222398257 28.163561708283364 28.910975052768546 21.540121014965525 60-61 21.42027380941364 28.065040041661167 28.957684305637464 21.557001843287733 62-63 21.490348084174535 28.14874051735876 28.97198393209821 21.388927466368493 64-65 21.292517375909263 28.149402379289324 28.873682887001724 21.68439735779969 66-67 21.371216984098947 28.244848636283347 28.713384714138623 21.67054966547908 68-69 21.31734177057824 28.376007126706206 28.749712348868506 21.55693875384705 70-71 21.333389083235993 28.166184609894223 28.846463583460125 21.653962723409656 72-73 21.363699576688294 28.173789580844417 28.59852695194629 21.863983890521 74-75 21.30904340650598 28.24573698422657 28.555959214665773 21.889260394601674 76-77 21.516462009191766 28.00305605167532 28.640071423222334 21.840410515910584 78-79 21.48281997452843 28.028833932394985 28.534089194890623 21.954256898185964 80-81 21.683749947384452 28.089194429754983 28.336547247292344 21.890508375568224 82-83 21.689477083217 28.261183087367588 28.40708824358516 21.64225158583025 84-85 21.57168208421984 28.11043194489895 28.350363837256708 21.967522133624502 86-87 21.49305290457605 28.340687390432862 28.390571691891946 21.77568801309914 88-89 21.749219872077337 28.128995371055254 28.33582259702353 21.785962159843876 90-91 21.774792162956157 28.313098715196215 28.355179743689245 21.556929378158372 92-93 21.594720129338103 28.275942747027543 28.372719304829232 21.756617818805125 94-95 21.729856082392704 28.13253080346938 28.40728174405629 21.730331370081622 96-97 21.690433575709836 28.346081486201165 28.470908195232525 21.49257674285648 98-99 21.926820320457253 28.783142413834867 28.61313151394249 20.67690575176539 100-101 22.31734763949595 31.348106981155027 26.168210564445403 20.166334814903625 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3158.0 1 2847.0 2 3471.5 3 4497.0 4 5273.5 5 7823.0 6 10666.5 7 14313.0 8 18789.5 9 20983.0 10 19544.0 11 17442.5 12 18372.5 13 22775.0 14 32316.0 15 44512.5 16 55080.0 17 62734.5 18 65154.5 19 61927.5 20 56598.0 21 52271.0 22 51793.5 23 57855.5 24 70642.0 25 90208.5 26 116320.0 27 145724.5 28 177482.5 29 212079.5 30 245261.0 31 277862.5 32 312385.5 33 346977.0 34 377916.0 35 406608.5 36 437757.0 37 463090.5 38 482387.0 39 499432.5 40 516427.0 41 531001.5 42 536180.5 43 540490.0 44 544443.0 45 543319.5 46 539369.5 47 532926.5 48 522649.0 49 507055.0 50 488767.5 51 465686.0 52 437332.0 53 407032.5 54 375232.0 55 342230.5 56 308416.0 57 274383.0 58 240329.5 59 204561.0 60 168258.0 61 134766.5 62 103508.0 63 77164.5 64 56843.0 65 41285.0 66 29899.0 67 21882.5 68 15941.5 69 11410.0 70 8166.5 71 5742.5 72 3813.5 73 2390.0 74 1485.5 75 934.0 76 595.0 77 353.0 78 225.0 79 153.0 80 104.5 81 76.0 82 54.5 83 37.0 84 25.5 85 18.5 86 15.5 87 13.5 88 10.5 89 8.5 90 7.0 91 4.5 92 2.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.003235632884784737 4 9.013548750471766E-4 5 0.05499805515351961 6 0.0 7 0.0 8 0.0 9 2.1570885898564913E-4 10-11 0.0 12-13 7.70388782091604E-6 14-15 4.622332692549624E-4 16-17 1.155583173137406E-5 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 1.2716095104523028E-4 28-29 0.0 30-31 3.0866040919419104E-5 32-33 0.0 34-35 2.324538416406654E-5 36-37 0.0 38-39 0.0 40-41 0.0 42-43 1.264950829384776E-4 44-45 2.2695460171358688E-4 46-47 1.0038157042550142E-4 48-49 0.002234874997611275 50-51 6.690412463520424E-4 52-53 0.0056221585819971505 54-55 0.0012643640118865092 56-57 0.00327753005667673 58-59 0.008736749019670585 60-61 0.009127269041186697 62-63 0.007591980274585523 64-65 0.011388749496082009 66-67 0.005152175269076231 68-69 0.004637846961047519 70-71 0.005238344453262276 72-73 0.007654613225985168 74-75 0.005822998441410164 76-77 0.0028701477999956656 78-79 1.228267456421412E-4 80-81 2.711186867084339E-4 82-83 0.0 84-85 0.0 86-87 9.466520396304517E-4 88-89 1.9131622357271282E-5 90-91 6.770876910777737E-5 92-93 9.78529305680617E-6 94-95 7.772873661097757E-4 96-97 3.613352058526668E-4 98-99 4.154712347451946E-5 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 176.0 20-21 660.0 22-23 1370.0 24-25 1844.0 26-27 3888.0 28-29 8276.0 30-31 21198.0 32-33 28443.0 34-35 39671.0 36-37 62262.0 38-39 69745.0 40-41 74102.0 42-43 86173.0 44-45 103343.0 46-47 104976.0 48-49 96194.0 50-51 85290.0 52-53 72741.0 54-55 78543.0 56-57 80602.0 58-59 49660.0 60-61 93604.0 62-63 89806.0 64-65 96065.0 66-67 102769.0 68-69 104947.0 70-71 105902.0 72-73 97055.0 74-75 98492.0 76-77 104447.0 78-79 109652.0 80-81 110536.0 82-83 104454.0 84-85 103732.0 86-87 107922.0 88-89 113841.0 90-91 119461.0 92-93 118912.0 94-95 127621.0 96-97 205951.0 98-99 1133545.0 100-101 8662588.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.12958808296732 #Duplication Level Percentage of deduplicated Percentage of total 1 88.86974196599633 74.76574784638863 2 7.738740445022095 13.02114091841416 3 1.9246525057704813 4.857606675399644 4 0.673486531302716 2.266405778316958 5 0.3239726945951226 1.3627844673208318 6 0.1578088428415998 0.7965835766468109 7 0.0954255557031 0.5619678885723038 8 0.054214818121806486 0.36488562532644564 9 0.04048154591516881 0.30651262045243916 >10 0.11905308027789901 1.4806395199304303 >50 0.001997519121407698 0.11349978936369362 >100 3.7936196016252993E-4 0.05242063163663071 >500 0.0 0.0 >1k 4.513337220590499E-5 0.04980466223101049 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 7.70388782091604E-6 2 0.0 1.540777564183208E-5 0.0 0.0 7.70388782091604E-6 3 0.0 1.540777564183208E-5 0.0 0.0 7.70388782091604E-6 4 0.0 3.85194391045802E-5 0.0 7.70388782091604E-6 7.70388782091604E-6 5 7.70388782091604E-6 3.85194391045802E-5 0.0 1.540777564183208E-5 7.70388782091604E-6 6 7.70388782091604E-6 3.85194391045802E-5 0.0 1.540777564183208E-5 7.70388782091604E-6 7 7.70388782091604E-6 3.85194391045802E-5 0.0 3.081555128366416E-5 7.70388782091604E-6 8 7.70388782091604E-6 4.622332692549624E-5 0.0 3.081555128366416E-5 1.540777564183208E-5 9 7.70388782091604E-6 1.2326220513465664E-4 0.0 3.85194391045802E-5 1.540777564183208E-5 10-11 3.85194391045802E-5 1.4637386859740477E-4 0.0 6.933499038824437E-5 1.540777564183208E-5 12-13 6.933499038824437E-5 1.579297003287788E-4 0.0 8.474276603007643E-5 1.540777564183208E-5 14-15 7.318693429870238E-5 2.2726469071702318E-4 0.0 9.62985977614505E-5 1.540777564183208E-5 16-17 8.474276603007644E-5 2.311166346274812E-4 0.0 1.2326220513465664E-4 2.311166346274812E-5 18-19 8.474276603007644E-5 2.3882052244839726E-4 0.0 1.540777564183208E-4 3.85194391045802E-5 20-21 8.474276603007644E-5 2.6578412982160337E-4 0.0 1.6948553206015286E-4 4.2371383015038215E-5 22-23 9.244665385099249E-5 2.888957932843515E-4 0.0 2.542282980902293E-4 5.3927214746412276E-5 24-25 1.3096609295557268E-4 3.4667495194122175E-4 0.0 3.081555128366416E-4 6.548304647778635E-5 26-27 1.4637386859740477E-4 3.697866154039699E-4 0.0 4.083060545085501E-4 6.933499038824437E-5 28-29 1.4637386859740477E-4 3.697866154039699E-4 0.0 7.70388782091604E-4 6.933499038824437E-5 30-31 1.694855320601529E-4 3.7749050322488593E-4 0.0 0.0021917560850506133 7.70388782091604E-5 32-33 1.7718941988106892E-4 3.8134244713534395E-4 0.0 0.0054235370259248915 8.474276603007644E-5 34-35 1.88745251612443E-4 4.237138301503822E-4 0.0 0.009695342822622837 9.244665385099248E-5 36-37 2.0030108334381704E-4 4.699371570758785E-4 0.0 0.01632453829252109 1.0015054167190852E-4 38-39 2.0030108334381704E-4 5.123085400909166E-4 0.0 0.029559817568854847 1.0015054167190852E-4 40-41 2.1570885898564913E-4 5.469760352850388E-4 0.0 0.07337182760640437 1.0015054167190852E-4 42-43 2.1570885898564913E-4 5.662357548373289E-4 0.0 0.08620265277214004 1.0785442949282455E-4 44-45 2.1956080289610715E-4 6.201629695837413E-4 0.0 0.10527747901672815 1.1941026122419863E-4 46-47 2.2341274680656516E-4 6.702382404196955E-4 0.0 0.12688303241048718 1.2326220513465664E-4 48-49 2.2341274680656516E-4 6.856460160615276E-4 0.0 0.1468476576983911 1.3866998077648873E-4 50-51 2.2341274680656516E-4 7.395732308079398E-4 0.0 0.16645020025871196 1.3866998077648873E-4 52-53 2.2341274680656516E-4 7.472771186288558E-4 0.0 0.20144125874131263 1.3866998077648873E-4 54-55 2.2341274680656516E-4 7.54981006449772E-4 0.0 0.2853520048867301 1.3866998077648873E-4 56-57 2.2341274680656516E-4 7.81944613822978E-4 0.0 0.38097266051994005 1.3866998077648873E-4 58-59 2.2341274680656516E-4 8.320198846589323E-4 0.0 0.4767281341900159 1.3866998077648873E-4 60-61 2.2341274680656516E-4 8.628354359425964E-4 0.0 0.8240579165960156 1.3866998077648873E-4 62-63 2.2341274680656516E-4 8.975029311367186E-4 0.0 0.8314844644553787 1.3866998077648873E-4 64-65 2.2341274680656516E-4 9.321704263308408E-4 0.0 0.8391498328371901 1.3866998077648873E-4 66-67 2.3882052244839723E-4 9.398743141517568E-4 0.0 0.8456673219336851 1.5022581250786278E-4 68-69 2.3882052244839723E-4 9.706898654354211E-4 0.0 0.8516185752753427 1.6178164423923683E-4 70-71 2.3882052244839723E-4 9.78393753256337E-4 0.0 0.8575852363926422 1.694855320601529E-4 72-73 2.3882052244839723E-4 9.86097641077253E-4 0.0 0.8618493383015192 1.92597195522901E-4 74-75 2.3882052244839723E-4 9.976534728086271E-4 0.0 0.8653661630917674 1.92597195522901E-4 76-77 2.3882052244839723E-4 0.0010092093045400014 0.0 0.8682974924076259 1.92597195522901E-4 78-79 2.3882052244839723E-4 0.0010169131923609173 0.0 0.8708975545471851 1.92597195522901E-4 80-81 2.3882052244839723E-4 0.0010169131923609173 0.0 0.872056989664233 1.92597195522901E-4 82-83 2.3882052244839723E-4 0.0010284690240922913 0.0 0.8725692982043238 1.92597195522901E-4 84-85 2.3882052244839723E-4 0.0010554326314654973 0.0 0.8731008664639671 2.0030108334381704E-4 86-87 2.3882052244839723E-4 0.0010708404071073296 0.0 0.8734167258646246 2.0030108334381704E-4 88-89 2.3882052244839723E-4 0.0011170637340328258 0.0 0.8735361361258489 2.0800497116473307E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 18975 0.0 53.25886 1 GTATCAA 35100 0.0 37.91045 1 ATCAACG 42395 0.0 31.356504 3 TCAACGC 42550 0.0 31.251764 4 CAACGCA 43500 0.0 30.558918 5 TATCAAC 43945 0.0 30.398638 2 AACGCAG 45020 0.0 29.559446 6 TGGTATC 8305 0.0 27.61033 2 GTGGTAT 8995 0.0 27.327038 1 ACGCAGA 51255 0.0 25.963638 7 CGCAGAG 51830 0.0 25.650671 8 GCAGAGT 59695 0.0 22.256575 9 GAGTACT 35335 0.0 21.011206 12-13 GTACATG 41815 0.0 20.854937 1 TACATGG 41500 0.0 20.531855 2 ACATGGG 41545 0.0 20.070648 3 CAGAGTA 58360 0.0 19.969221 10-11 GAGACCG 13355 0.0 19.717627 88-89 GACCGAG 13705 0.0 19.57368 90-91 CGAGACC 13325 0.0 19.154922 88-89 >>END_MODULE