##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140390_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9703805 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.164303281032545 28.0 18.0 32.0 18.0 33.0 2 26.946761914527343 29.0 25.0 32.0 18.0 33.0 3 28.53711167938762 30.0 27.0 33.0 18.0 33.0 4 29.297959099549093 31.0 29.0 33.0 15.0 33.0 5 30.7739032266209 33.0 32.0 33.0 27.0 33.0 6 33.7268011877815 36.0 33.0 38.0 26.0 38.0 7 35.26971626078636 37.0 35.0 38.0 29.0 38.0 8 35.815362015209494 38.0 36.0 38.0 31.0 38.0 9 36.017625251125715 38.0 37.0 38.0 31.0 38.0 10-11 36.1290796754469 38.0 37.0 38.0 33.0 38.0 12-13 36.12629272744042 38.0 37.0 38.0 32.5 38.0 14-15 36.2498853800133 38.0 37.0 38.0 33.0 38.0 16-17 36.267045401262706 38.0 37.0 38.0 33.0 38.0 18-19 36.3016014851906 38.0 37.0 38.0 33.0 38.0 20-21 36.319623679734065 38.0 37.0 38.0 33.0 38.0 22-23 36.3199739344577 38.0 37.0 38.0 33.0 38.0 24-25 36.3159630742258 38.0 37.0 38.0 33.0 38.0 26-27 36.25100023280273 38.0 37.0 38.0 33.0 38.0 28-29 36.221033603957075 38.0 37.0 38.0 33.0 38.0 30-31 36.21847466374787 38.0 37.0 38.0 33.0 38.0 32-33 36.19115940007049 38.0 37.0 38.0 33.0 38.0 34-35 36.158477850995666 38.0 37.0 38.0 33.0 38.0 36-37 36.13157051592317 38.0 37.0 38.0 33.0 38.0 38-39 36.11756570355738 38.0 37.0 38.0 33.0 38.0 40-41 36.111336685066064 38.0 37.0 38.0 33.0 38.0 42-43 36.072347927746854 38.0 37.0 38.0 32.5 38.0 44-45 36.01957198028728 38.0 37.0 38.0 31.0 38.0 46-47 35.98229456248951 38.0 37.0 38.0 31.0 38.0 48-49 35.92976460652355 38.0 37.0 38.0 31.0 38.0 50-51 35.894888655809766 38.0 37.0 38.0 31.0 38.0 52-53 35.872153051278175 38.0 37.0 38.0 31.0 38.0 54-55 35.83278936230354 38.0 37.0 38.0 31.0 38.0 56-57 35.79839949382652 38.0 37.0 38.0 31.0 38.0 58-59 35.76928779074687 38.0 37.0 38.0 31.0 38.0 60-61 35.76697766953818 38.0 37.0 38.0 31.0 38.0 62-63 35.762580597450295 38.0 37.0 38.0 30.5 38.0 64-65 35.73229697561666 38.0 37.0 38.0 29.5 38.0 66-67 35.71357009005405 38.0 37.0 38.0 29.0 38.0 68-69 35.7014174808921 38.0 37.0 38.0 29.0 38.0 70-71 35.6687718012696 38.0 36.5 38.0 29.0 38.0 72-73 35.657484163690256 38.0 36.0 38.0 29.0 38.0 74-75 35.676980571347805 38.0 36.0 38.0 29.0 38.0 76-77 35.63593990222971 38.0 36.0 38.0 29.0 38.0 78-79 35.637214752365416 38.0 36.0 38.0 29.0 38.0 80-81 35.60359757382255 38.0 36.0 38.0 29.0 38.0 82-83 35.57672377248918 38.0 36.0 38.0 29.0 38.0 84-85 35.558156422230574 38.0 36.0 38.0 29.0 38.0 86-87 35.530503453196445 38.0 36.0 38.0 29.0 38.0 88-89 35.453580792527674 38.0 36.0 38.0 29.0 38.0 90-91 35.465941432920815 38.0 36.0 38.0 29.0 38.0 92-93 35.504591981030785 38.0 36.0 38.0 29.0 38.0 94-95 35.47314095180278 38.0 36.0 38.0 29.0 38.0 96-97 35.46617437749488 38.0 36.0 38.0 29.0 38.0 98-99 35.49215357297636 38.0 36.0 38.0 29.0 38.0 100-101 34.887094515797294 38.0 35.0 38.0 27.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 6.0 18 18.0 19 83.0 20 249.0 21 983.0 22 3777.0 23 11466.0 24 25145.0 25 46355.0 26 75587.0 27 110409.0 28 152898.0 29 200130.0 30 254421.0 31 318301.0 32 397872.0 33 511277.0 34 690079.0 35 1042195.0 36 2108401.0 37 3754153.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.966148845736285 25.216737145892772 14.09384257000218 23.723271438368766 2 13.408245528429314 25.77261187750578 38.940271367777896 21.878871226287007 3 19.42754229270812 27.5235367129026 29.655897565059604 23.393023429329677 4 13.805320222223823 19.616807145293613 38.56702525729796 28.010847375184593 5 13.800386647763888 39.547003479829876 34.04221162520943 12.610398247196802 6 28.856185795159732 39.834693710353825 18.584246076667863 12.724874417818576 7 25.365658110401025 33.67736676489274 23.316595912634273 17.640379212071966 8 23.449090331060855 38.241658813218116 21.058368341078577 17.250882514642452 9 24.39716576631371 17.818538267585634 21.764997521070896 36.01929844502976 10-11 23.370404702073053 27.99385395728789 29.08323075329729 19.55251058734177 12-13 24.220700024371883 25.21300665048401 29.478039799851707 21.088253525292398 14-15 21.289542470626976 26.861156235374544 27.140687070820334 24.70861422317814 16-17 20.832595220657304 30.01645849570524 27.867332014056757 21.2836142695807 18-19 20.832070512546366 29.078134814127036 29.748387359391497 20.3414073139351 20-21 21.54740969934408 28.148805637174885 29.71742193399882 20.586362729482218 22-23 21.23588399654397 28.13638738009748 29.611126452811664 21.016602170546886 24-25 21.07553810738148 28.22881306624489 29.64967123970052 21.04597758667311 26-27 21.09670546425515 28.32305742054779 29.559965721414645 21.020271393782412 28-29 21.024546991553674 28.318762848537943 29.642919569377078 21.01377059053131 30-31 21.295317383659896 28.17594336114982 29.603277972318924 20.92546128287136 32-33 21.150709199420007 28.247743282520805 29.595733664046154 21.00581385401304 34-35 21.174879723006477 28.318512502673283 29.59384962640358 20.912758147916662 36-37 21.198764118260527 28.22793897606494 29.558675819012848 21.014621086661688 38-39 21.0386951259345 28.328269703169745 29.641796070306793 20.991239100588963 40-41 21.26565267107572 28.23366191128369 29.51791093671574 20.98277448092485 42-43 21.229538379191386 28.287207724796037 29.323173115447105 21.160080780565476 44-45 21.228595820768177 28.405377681905552 29.16701179746566 21.199014699860612 46-47 21.33079330710697 28.33821628892268 28.958865150654812 21.372125253315545 48-49 21.247076303841375 28.441141936050084 28.999859772693586 21.31192198741495 50-51 21.237735310880105 28.51851175485047 28.949405721780547 21.29434721248888 52-53 21.35510870183452 28.4750733939736 28.848398239419677 21.321419664772208 54-55 21.337968043206445 28.41588151734075 28.893420025046527 21.35273041440627 56-57 21.347777599883027 28.498152203611404 28.812369181179125 21.341701015326443 58-59 21.30502467143058 28.54425607594038 28.87882936394643 21.271889888682615 60-61 21.316581423301972 28.415518183215916 28.970318284090695 21.297582109391417 62-63 21.352242430771103 28.553840655006457 28.919721954776662 21.174194959445774 64-65 21.157984810371993 28.507752451641284 28.90393797834368 21.43032475964304 66-67 21.19970761777884 28.580739695898004 28.728177956126533 21.491374730196622 68-69 21.17357226462818 28.71686081853933 28.759358137573027 21.35020877925946 70-71 21.181551397638327 28.507643021682043 28.814938089218963 21.495867491460665 72-73 21.25303799635875 28.478994693621285 28.6515030903179 21.616464219702074 74-75 21.174734186015563 28.5191789567106 28.62433360027999 21.68175325699385 76-77 21.33023523324494 28.323658287782898 28.704327953328622 21.64177852564353 78-79 21.321307102323264 28.316004165530373 28.62411775099191 21.73857098115445 80-81 21.473136625234858 28.388623214604447 28.444602832063886 21.693637328096813 82-83 21.512591040102492 28.55641252436029 28.501729064360287 21.429267371176923 84-85 21.44183247682941 28.391274106327764 28.46893382145651 21.697959595386315 86-87 21.338456924214512 28.580432964149953 28.509710199887333 21.571399911748195 88-89 21.61491656059182 28.432232144295057 28.416234867558277 21.53661642755485 90-91 21.61799027769889 28.614479553108563 28.46674320782328 21.300786961369266 92-93 21.456560740290403 28.535300307963997 28.45921417404737 21.54892477769823 94-95 21.50912472261399 28.46628615836802 28.496309805415194 21.5282793136028 96-97 21.489879278835957 28.66008290926711 28.579271255734977 21.270766556161952 98-99 21.72212652332758 29.063410853422756 28.754901176555613 20.459561446694046 100-101 22.10409926721412 31.677763670243074 26.29148963286876 19.92664742967404 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1982.0 1 1805.0 2 1939.0 3 2517.5 4 3207.5 5 4457.5 6 6272.0 7 9609.5 8 12253.0 9 12799.0 10 12526.0 11 11985.0 12 12840.0 13 16307.5 14 24325.5 15 34375.0 16 41192.5 17 43392.5 18 42228.0 19 39682.5 20 37529.5 21 36722.0 22 38802.0 23 45120.5 24 55981.0 25 72569.5 26 93773.5 27 116471.5 28 141115.0 29 168443.0 30 194192.0 31 219502.5 32 245980.0 33 271327.0 34 294598.0 35 316125.5 36 338609.5 37 358437.5 38 372104.0 39 380900.5 40 390433.5 41 399901.5 42 403547.0 43 405041.0 44 406610.5 45 405948.0 46 402746.0 47 397700.5 48 388060.5 49 372196.5 50 353714.5 51 333841.0 52 311695.0 53 288012.0 54 263953.5 55 239458.0 56 215206.0 57 190860.5 58 165733.5 59 140221.5 60 114655.5 61 90925.0 62 69589.0 63 51770.5 64 37672.5 65 26724.5 66 19249.0 67 14358.5 68 10573.5 69 7519.0 70 5256.0 71 3618.5 72 2432.5 73 1582.5 74 1016.0 75 603.0 76 355.0 77 203.0 78 135.5 79 98.5 80 66.5 81 42.5 82 30.0 83 21.0 84 10.5 85 5.0 86 5.0 87 6.5 88 6.5 89 5.0 90 3.5 91 2.5 92 1.0 93 0.0 94 0.0 95 0.5 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0024835618605279063 4 7.728926951850331E-4 5 0.05209296765547122 6 0.0 7 0.0 8 0.0 9 1.8549424684440795E-4 10-11 0.0 12-13 0.0 14-15 4.688882350789201E-4 16-17 2.0610471871600883E-5 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 1.5978504272832445E-4 28-29 0.0 30-31 4.644421538845478E-5 32-33 0.0 34-35 2.590389437593814E-5 36-37 0.0 38-39 0.0 40-41 0.0 42-43 1.2145691690804909E-4 44-45 2.605088332963039E-4 46-47 8.036016784346095E-5 48-49 0.00197544958749806 50-51 6.413365540747808E-4 52-53 0.005348395464954392 54-55 9.955151218747013E-4 56-57 0.0027670384404174446 58-59 0.007826282159474564 60-61 0.008584469615116004 62-63 0.006968842906168615 64-65 0.010220571394067778 66-67 0.004439198003962671 68-69 0.004310132932115926 70-71 0.00465135909627411 72-73 0.0070461752303923155 74-75 0.005333518023413611 76-77 0.0026923875041699173 78-79 2.1084233198366128E-4 80-81 2.4325684425936654E-4 82-83 0.0 84-85 0.0 86-87 9.943237869703186E-4 88-89 4.420879891514133E-5 90-91 1.0211149988646477E-4 92-93 6.451804376129873E-6 94-95 7.567832900161887E-4 96-97 3.370445239781405E-4 98-99 3.415512382871834E-5 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 126.0 20-21 469.0 22-23 822.0 24-25 1352.0 26-27 2696.0 28-29 5821.0 30-31 15197.0 32-33 20031.0 34-35 28154.0 36-37 43973.0 38-39 50126.0 40-41 52454.0 42-43 60610.0 44-45 70947.0 46-47 70496.0 48-49 65745.0 50-51 59321.0 52-53 51278.0 54-55 54860.0 56-57 56949.0 58-59 35063.0 60-61 66009.0 62-63 63986.0 64-65 68936.0 66-67 74171.0 68-69 75161.0 70-71 76444.0 72-73 68875.0 74-75 69969.0 76-77 74446.0 78-79 77751.0 80-81 78521.0 82-83 74844.0 84-85 73942.0 86-87 77046.0 88-89 81510.0 90-91 84984.0 92-93 84987.0 94-95 91875.0 96-97 150189.0 98-99 848938.0 100-101 6594731.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.41084727808625 #Duplication Level Percentage of deduplicated Percentage of total 1 89.10231346308863 75.21201773856944 2 7.5651314992996115 12.771583192520383 3 1.9007022881732265 4.81319671704298 4 0.6558399383480552 2.214400194990688 5 0.31076691718898597 1.311604939296059 6 0.16113657952752627 0.8161005123246733 7 0.0892498534743756 0.5273559025851966 8 0.05379327646776642 0.36325888356068015 9 0.03856913464407696 0.2930088000680214 >10 0.12024085770610121 1.4969259406899758 >50 0.001789649299636193 0.09781986117770095 >100 4.4686454817701165E-4 0.06762831457329586 >500 1.967823384434358E-5 0.015099002600892548 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.0610471871600883E-5 0.0 0.0 0.0 3 0.0 2.0610471871600883E-5 0.0 0.0 0.0 4 0.0 5.152617967900221E-5 0.0 0.0 0.0 5 0.0 7.213665155060309E-5 0.0 0.0 0.0 6 0.0 7.213665155060309E-5 0.0 0.0 1.0305235935800442E-5 7 0.0 9.274712342220397E-5 0.0 0.0 1.0305235935800442E-5 8 0.0 9.274712342220397E-5 0.0 0.0 1.0305235935800442E-5 9 0.0 1.236628312296053E-4 0.0 3.0915707807401325E-5 1.0305235935800442E-5 10-11 4.1220943743201766E-5 1.236628312296053E-4 0.0 3.0915707807401325E-5 1.0305235935800442E-5 12-13 4.1220943743201766E-5 1.236628312296053E-4 0.0 3.0915707807401325E-5 1.0305235935800442E-5 14-15 4.1220943743201766E-5 2.009521007481086E-4 0.0 3.0915707807401325E-5 2.5763089839501104E-5 16-17 4.1220943743201766E-5 2.1125733668390906E-4 0.0 3.0915707807401325E-5 3.0915707807401325E-5 18-19 4.1220943743201766E-5 2.3702042652341013E-4 0.0 4.1220943743201766E-5 3.0915707807401325E-5 20-21 4.1220943743201766E-5 2.57630898395011E-4 0.0 6.183141561480265E-5 3.0915707807401325E-5 22-23 5.152617967900221E-5 2.988518421382128E-4 0.0 1.0820497732590464E-4 4.1220943743201766E-5 24-25 6.183141561480265E-5 3.400727858814146E-4 0.0 1.3912068513330595E-4 5.152617967900221E-5 26-27 7.213665155060309E-5 3.50378021817215E-4 0.0 1.9064686481230818E-4 5.152617967900221E-5 28-29 7.213665155060309E-5 3.606832577530154E-4 0.0 5.770932124048247E-4 5.152617967900221E-5 30-31 8.244188748640353E-5 3.709884936888159E-4 0.0 0.002055894569192188 5.152617967900221E-5 32-33 8.244188748640353E-5 3.709884936888159E-4 0.0 0.0046631192609497 5.152617967900221E-5 34-35 9.78997413901042E-5 4.1220943743201766E-4 0.0 0.008491514411099563 6.698403358270287E-5 36-37 1.1335759529380486E-4 4.534303811752194E-4 0.0 0.014834387129584736 7.213665155060309E-5 38-39 1.1335759529380486E-4 4.585829991431196E-4 0.0 0.027010023387732958 7.213665155060309E-5 40-41 1.236628312296053E-4 5.35872268661623E-4 0.0 0.06663365556088566 7.213665155060309E-5 42-43 1.236628312296053E-4 5.513301225653236E-4 0.0 0.07784059964106863 8.759450545430375E-5 44-45 1.236628312296053E-4 6.389246280196273E-4 0.0 0.09523583790069978 1.0305235935800442E-4 46-47 1.236628312296053E-4 7.110612795702305E-4 0.0 0.1145839183701651 1.1335759529380486E-4 48-49 1.236628312296053E-4 7.110612795702305E-4 0.0 0.13242228177503568 1.236628312296053E-4 50-51 1.236628312296053E-4 7.522822233134321E-4 0.0 0.15093563813370117 1.236628312296053E-4 52-53 1.236628312296053E-4 7.625874592492326E-4 0.0 0.1841545661727539 1.4427330310120618E-4 54-55 1.236628312296053E-4 7.780453131529333E-4 0.0 0.26373159806900487 1.700363929407073E-4 56-57 1.236628312296053E-4 7.935031670566339E-4 0.0 0.35349535568779467 1.751890109086075E-4 58-59 1.236628312296053E-4 7.935031670566339E-4 0.0 0.4433260973401671 1.751890109086075E-4 60-61 1.3396806716540574E-4 8.244188748640353E-4 0.0 0.7692497942817276 1.803416288765077E-4 62-63 1.3396806716540574E-4 8.501819647035364E-4 0.0 0.7764016280211732 1.8549424684440795E-4 64-65 1.3396806716540574E-4 9.274712342220397E-4 0.0 0.7835070881989075 1.8549424684440795E-4 66-67 1.3396806716540574E-4 9.480817060936406E-4 0.0 0.7899066397150396 1.9064686481230818E-4 68-69 1.3396806716540574E-4 9.635395599973413E-4 0.0 0.7963371069389791 2.0610471871600883E-4 70-71 1.3396806716540574E-4 9.893026498368424E-4 0.0 0.8021338021528668 2.267151905876097E-4 72-73 1.3396806716540574E-4 9.893026498368424E-4 0.0 0.8060807075162784 2.3702042652341016E-4 74-75 1.3396806716540574E-4 0.001009913121708443 0.0 0.8094814353750925 2.3702042652341016E-4 76-77 1.3396806716540574E-4 0.001071744537323246 0.0 0.8122844595496302 2.3702042652341016E-4 78-79 1.3396806716540574E-4 0.0011026602451306472 0.0 0.8148040897359334 2.3702042652341016E-4 80-81 1.3396806716540574E-4 0.0011026602451306472 0.0 0.8159170552169999 2.3702042652341016E-4 82-83 1.3912068513330595E-4 0.0011078128630985474 0.0 0.8163962486880146 2.473256624592106E-4 84-85 1.4427330310120618E-4 0.0011232707170022482 0.0 0.8168909000129331 2.473256624592106E-4 86-87 1.4427330310120618E-4 0.0011335759529380485 0.0 0.8171794466191354 2.473256624592106E-4 88-89 1.4427330310120618E-4 0.0011851021326170507 0.0 0.8172670411245898 2.473256624592106E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11645 0.0 42.78062 1 GTATCAA 20160 0.0 35.15029 1 TCAACGC 25840 0.0 28.183538 4 ATCAACG 25885 0.0 28.118256 3 CAACGCA 26700 0.0 27.210203 5 TATCAAC 27215 0.0 26.53555 2 AACGCAG 27780 0.0 26.250057 6 TGGTATC 6215 0.0 23.253471 2 GTGGTAT 6445 0.0 23.101086 1 ACGCAGA 33245 0.0 21.895544 7 CGCAGAG 33510 0.0 21.670412 8 GCAGAGT 39650 0.0 18.38068 9 AGAGTAC 36050 0.0 18.140198 10-11 GAGACCG 10095 0.0 17.75981 88-89 GACCGAG 10340 0.0 17.555618 90-91 ACGAGAC 10465 0.0 17.228952 86-87 CGAGACC 10195 0.0 17.152063 88-89 AGACCGA 10220 0.0 17.050186 90-91 ACCGAGG 10675 0.0 16.853554 92-93 AGTACTT 26085 0.0 16.730143 12-13 >>END_MODULE