##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140389_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 21711134 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 24.597400762208 25.0 18.0 32.0 18.0 33.0 2 27.675413361642004 29.0 25.0 32.0 18.0 33.0 3 29.566927733945175 31.0 28.0 33.0 25.0 33.0 4 30.647698687687157 33.0 31.0 33.0 27.0 33.0 5 31.08758229763586 33.0 32.0 33.0 27.0 33.0 6 34.999679519273386 37.0 34.0 38.0 29.0 38.0 7 35.37750731951634 38.0 35.0 38.0 29.0 38.0 8 36.02886933496887 38.0 37.0 38.0 31.0 38.0 9 36.23269139235196 38.0 37.0 38.0 33.0 38.0 10-11 36.27102414364906 38.0 37.0 38.0 33.0 38.0 12-13 36.24906190989379 38.0 37.0 38.0 33.0 38.0 14-15 36.35115846551359 38.0 37.0 38.0 33.0 38.0 16-17 36.341529535030276 38.0 37.0 38.0 33.0 38.0 18-19 36.36920740759096 38.0 37.0 38.0 33.0 38.0 20-21 36.38073680093714 38.0 37.0 38.0 33.0 38.0 22-23 36.375459271102386 38.0 37.0 38.0 33.0 38.0 24-25 36.3650143409138 38.0 37.0 38.0 33.0 38.0 26-27 36.30212480348154 38.0 37.0 38.0 33.0 38.0 28-29 36.27405837340807 38.0 37.0 38.0 33.0 38.0 30-31 36.270637752311885 38.0 37.0 38.0 33.0 38.0 32-33 36.24300620914828 38.0 37.0 38.0 33.0 38.0 34-35 36.21256533154414 38.0 37.0 38.0 33.0 38.0 36-37 36.185771500008585 38.0 37.0 38.0 33.0 38.0 38-39 36.16801747964861 38.0 37.0 38.0 33.0 38.0 40-41 36.164947856943925 38.0 37.0 38.0 33.0 38.0 42-43 36.115263545046794 38.0 37.0 38.0 33.0 38.0 44-45 36.06405711160649 38.0 37.0 38.0 32.5 38.0 46-47 36.02762607761828 38.0 37.0 38.0 31.0 38.0 48-49 35.97583899437717 38.0 37.0 38.0 31.0 38.0 50-51 35.941346730293844 38.0 37.0 38.0 31.0 38.0 52-53 35.917144090659036 38.0 37.0 38.0 31.0 38.0 54-55 35.87822687088619 38.0 37.0 38.0 31.0 38.0 56-57 35.84170179699535 38.0 37.0 38.0 31.0 38.0 58-59 35.815486119599356 38.0 37.0 38.0 31.0 38.0 60-61 35.81435690747557 38.0 37.0 38.0 31.0 38.0 62-63 35.8073008824838 38.0 37.0 38.0 31.0 38.0 64-65 35.77444015987972 38.0 37.0 38.0 31.0 38.0 66-67 35.75292617509538 38.0 37.0 38.0 30.5 38.0 68-69 35.74504246898911 38.0 37.0 38.0 30.5 38.0 70-71 35.71281642818708 38.0 37.0 38.0 29.5 38.0 72-73 35.6984855388483 38.0 37.0 38.0 29.0 38.0 74-75 35.713922496304704 38.0 37.0 38.0 29.0 38.0 76-77 35.6716099433724 38.0 36.5 38.0 29.0 38.0 78-79 35.67145759775693 38.0 36.0 38.0 29.0 38.0 80-81 35.64149443836263 38.0 36.0 38.0 29.0 38.0 82-83 35.61528630900149 38.0 36.0 38.0 29.0 38.0 84-85 35.593309644810134 38.0 36.0 38.0 29.0 38.0 86-87 35.5623192959257 38.0 36.0 38.0 29.0 38.0 88-89 35.48390028167564 38.0 36.0 38.0 29.0 38.0 90-91 35.49957247919354 38.0 36.0 38.0 29.0 38.0 92-93 35.53828262396219 38.0 36.0 38.0 29.0 38.0 94-95 35.5089063891685 38.0 36.0 38.0 29.0 38.0 96-97 35.50220026588079 38.0 36.0 38.0 29.0 38.0 98-99 35.52902608709316 38.0 36.0 38.0 29.0 38.0 100-101 34.9272240461402 38.0 35.0 38.0 27.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 10.0 18 93.0 19 186.0 20 458.0 21 1986.0 22 7893.0 23 23700.0 24 52753.0 25 97785.0 26 157730.0 27 233878.0 28 322461.0 29 424487.0 30 540388.0 31 678550.0 32 853983.0 33 1099464.0 34 1489586.0 35 2266884.0 36 4634517.0 37 8824342.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.88110294008595 27.60936393280977 13.792365705080167 23.71716742202411 2 14.162715506371775 21.137146550573846 39.23281663835784 25.467321304696533 3 17.040285626086625 25.941596698611395 32.3226391210717 24.695478554230274 4 13.562788988973166 19.238589075159748 38.467676070363474 28.73094586550361 5 13.986464466528812 36.653589070265475 35.358588135712566 14.001358327493147 6 29.02090236281532 39.40150707927094 18.522938507035146 13.054652050878596 7 25.532908598878347 33.467169425604396 23.34719595945564 17.65272601606162 8 23.507468564285954 38.06063285317109 20.919902203173727 17.511996379369222 9 24.459952537644224 17.5275357983918 21.69516414667317 36.31734751729081 10-11 23.483789469495235 27.552271106612856 29.02303490918531 19.9409045147066 12-13 24.2860396947953 24.9047936626616 29.42045149323963 21.388715149303465 14-15 21.577280498769287 26.446218145238554 26.879315776673984 25.09718557931817 16-17 21.110323675713126 29.720394312990223 27.669602710886267 21.49967930041039 18-19 21.122406595620475 28.783717607749093 29.41021182956173 20.683663967068693 20-21 21.808912563259767 27.787313791521672 29.470128502199312 20.93364514301925 22-23 21.58673244374335 27.743497867612838 29.295910915312334 21.37385877333148 24-25 21.394531537647417 27.908398707651937 29.370597268852993 21.326472485847653 26-27 21.389582958647775 28.001258091105914 29.273125262375878 21.336033687870433 28-29 21.319692620528745 27.9742447312824 29.343282958157197 21.362779690031665 30-31 21.57489975521679 27.878084704575812 29.29540979473258 21.25160574547482 32-33 21.42806536136352 27.958098546007037 29.26793941342926 21.345896679200184 34-35 21.44965195746176 27.996187202663457 29.305203018216076 21.248957821658706 36-37 21.47418046634552 27.9364565235911 29.236210083556614 21.353152926506763 38-39 21.349953803375094 27.9934114238439 29.32250574339414 21.33412902938687 40-41 21.545178731927194 27.878269198928358 29.225348189656785 21.351203879487667 42-43 21.45529723553185 28.00326734592978 29.057317539085876 21.48411787945249 44-45 21.487544412349802 28.0369197790404 28.928309667794345 21.547226140815457 46-47 21.62094072810001 28.029496591762076 28.708566037506618 21.640996642631297 48-49 21.524034138711645 28.14881284519139 28.699581939557596 21.627571076539372 50-51 21.520679227736405 28.195786042370326 28.645311373196826 21.638223356696447 52-53 21.608713173039483 28.1507669665245 28.61635289977473 21.624166960661288 54-55 21.563340134558505 28.10982252941065 28.601758833258735 21.725078502772114 56-57 21.6006547852756 28.147388634435693 28.57682656479493 21.675130015493774 58-59 21.542631010149346 28.218632608164423 28.66440661582617 21.57432976586006 60-61 21.570952783076596 28.098219343764658 28.71045595894031 21.620371914218435 62-63 21.678287725971387 28.19800811653352 28.678284331615494 21.4454198258796 64-65 21.399009794909972 28.18785933687616 28.63224597531301 21.78088489290086 66-67 21.447581200474662 28.29004280483143 28.478805948077714 21.783570046616198 68-69 21.42905024845491 28.359949850874006 28.524773524541363 21.686226376129724 70-71 21.43996652681307 28.178781472158636 28.562625503987583 21.818626497040704 72-73 21.504197966651393 28.175481698072225 28.336518017574885 21.9838023177015 74-75 21.40258357069449 28.19741640816505 28.374663334824003 22.025336686316464 76-77 21.59951664820946 28.023224529080043 28.44344446139331 21.93381436131719 78-79 21.5804969360784 28.001741531305214 28.375668986646808 22.04209254596958 80-81 21.770243276085885 28.03383570563845 28.19524406743642 22.00067695083924 82-83 21.736041382447127 28.265678564616326 28.244093571588895 21.75418648134765 84-85 21.67117122786625 28.100697101649924 28.206806592293116 22.02132507819071 86-87 21.614836548007524 28.290504717496486 28.224153558538802 21.87050517595719 88-89 21.825734268629155 28.084835139461784 28.22265472160729 21.866775870301772 90-91 21.89120309116359 28.296170772082686 28.215542997750966 21.597083139002756 92-93 21.727392942327434 28.17882663652108 28.236317786364822 21.857462634786664 94-95 21.771009147791382 28.111470057535037 28.308736793517287 21.808784001156294 96-97 21.742590195399625 28.347290927338538 28.315966570741114 21.594152306520726 98-99 22.0112558156574 28.729094161751593 28.482363751816436 20.777286270774567 100-101 22.40384005333908 31.3404600679919 25.971361984363384 20.284337894305633 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 4754.0 1 4553.0 2 5451.0 3 6646.5 4 7643.5 5 9783.5 6 12697.5 7 17316.0 8 21770.0 9 23842.5 10 23518.0 11 23263.0 12 25859.5 13 32863.0 14 48286.0 15 66995.0 16 80126.0 17 86609.5 18 87399.0 19 83894.0 20 79605.0 21 77186.0 22 80341.5 23 93388.5 24 116160.5 25 149818.5 26 193059.5 27 241243.0 28 294962.5 29 352864.0 30 408630.0 31 464527.0 32 520994.5 33 576105.5 34 626736.5 35 670262.0 36 717679.0 37 762055.5 38 796582.5 39 822968.0 40 848036.5 41 871298.0 42 882448.5 43 888724.0 44 895490.5 45 900475.0 46 900627.0 47 896200.0 48 880026.5 49 849812.0 50 815947.5 51 778494.0 52 734392.5 53 689623.0 54 642678.5 55 588569.0 56 534174.5 57 476813.5 58 414671.5 59 351452.0 60 287421.5 61 229195.0 62 177085.0 63 132280.0 64 97041.0 65 70132.0 66 50239.5 67 36454.0 68 26610.5 69 19169.0 70 13753.5 71 9613.0 72 6512.5 73 4193.0 74 2640.5 75 1645.5 76 1031.5 77 610.5 78 362.5 79 222.0 80 159.5 81 118.0 82 76.0 83 51.5 84 37.0 85 23.5 86 15.0 87 11.0 88 7.5 89 5.0 90 3.5 91 3.5 92 5.0 93 4.5 94 2.5 95 1.0 96 0.5 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 4.605931684637016E-6 3 0.002358237022534152 4 4.5138130509442763E-4 5 0.05028756213286695 6 0.0 7 0.0 8 0.0 9 1.5199574559302155E-4 10-11 0.0 12-13 2.302965842318508E-6 14-15 4.329575783558795E-4 16-17 2.5332624265503593E-5 18-19 0.0 20-21 2.3030140535214477E-6 22-23 0.0 24-25 0.0 26-27 1.059696212279451E-4 28-29 0.0 30-31 1.61445172308472E-5 32-33 0.0 34-35 3.935586123021468E-5 36-37 0.0 38-39 0.0 40-41 0.0 42-43 1.3443326473306033E-4 44-45 2.777321946186752E-4 46-47 9.566370305297795E-5 48-49 0.0020502659190078467 50-51 6.113082121883796E-4 52-53 0.005343000103589276 54-55 0.0011218238056657504 56-57 0.002919446542093405 58-59 0.0081987392288069 60-61 0.008675488510368708 62-63 0.007039649948377996 64-65 0.010383739974942262 66-67 0.004598038621226676 68-69 0.004480802811533803 70-71 0.004723899138569189 72-73 0.007076866486185602 74-75 0.005324470595683802 76-77 0.0026541858109145238 78-79 1.6672033985995062E-4 80-81 3.0948089845888287E-4 82-83 0.0 84-85 0.0 86-87 8.850837917481041E-4 88-89 1.1279812297155488E-5 90-91 7.694843702334718E-5 92-93 8.644418335099436E-6 94-95 6.673134070053163E-4 96-97 3.1294735233549655E-4 98-99 6.410956801416125E-5 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 277.0 20-21 906.0 22-23 1800.0 24-25 2729.0 26-27 6003.0 28-29 12560.0 30-31 32580.0 32-33 43186.0 34-35 60474.0 36-37 96353.0 38-39 109495.0 40-41 114251.0 42-43 129566.0 44-45 154462.0 46-47 156046.0 48-49 145243.0 50-51 132409.0 52-53 114251.0 54-55 122966.0 56-57 127201.0 58-59 76954.0 60-61 148409.0 62-63 143250.0 64-65 154821.0 66-67 166834.0 68-69 169175.0 70-71 173938.0 72-73 154655.0 74-75 156490.0 76-77 166336.0 78-79 174488.0 80-81 178595.0 82-83 167988.0 84-85 165956.0 86-87 174160.0 88-89 184518.0 90-91 192196.0 92-93 191676.0 94-95 208435.0 96-97 338614.0 98-99 1918849.0 100-101 1.4742039E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 79.29628184399088 #Duplication Level Percentage of deduplicated Percentage of total 1 86.54371040725735 68.62594452278606 2 8.61558713948614 13.663680521283123 3 2.423280243502869 5.764713395273351 4 1.015761805246885 3.2218453758087184 5 0.5089169039134659 2.017760912394671 6 0.27895423457337776 1.3272020163783185 7 0.18184502516509252 1.0093744057193152 8 0.11468269765421628 0.727512921265434 9 0.07031003773669689 0.5017792111947675 >10 0.24323828902817363 2.8655580017027353 >50 0.0030329162785441557 0.16337133161798234 >100 6.441197251602323E-4 0.08774690338030036 >500 2.4133638444593163E-5 0.01298345047331065 >1k 1.2046793664381365E-5 0.010527030721913614 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 4.605931684637017E-6 4.605931684637017E-6 2 0.0 1.3817795053911048E-5 0.0 4.605931684637017E-6 4.605931684637017E-6 3 0.0 1.3817795053911048E-5 0.0 1.8423726738548066E-5 4.605931684637017E-6 4 0.0 5.527118021564419E-5 0.0 2.302965842318508E-5 9.211863369274033E-6 5 0.0 5.987711190028121E-5 0.0 2.302965842318508E-5 9.211863369274033E-6 6 3.224152179245911E-5 5.987711190028121E-5 0.0 2.7635590107822096E-5 9.211863369274033E-6 7 3.224152179245911E-5 5.987711190028121E-5 0.0 3.224152179245911E-5 9.211863369274033E-6 8 3.684745347709613E-5 6.448304358491823E-5 0.0 3.684745347709613E-5 1.3817795053911048E-5 9 3.684745347709613E-5 1.4738981390838453E-4 0.0 5.987711190028121E-5 1.3817795053911048E-5 10-11 3.915041931941464E-5 1.4738981390838453E-4 0.0 7.599787279651078E-5 1.3817795053911048E-5 12-13 4.375635100405165E-5 1.5660167727765854E-4 0.0 1.151482921159254E-4 1.8423726738548063E-5 14-15 5.527118021564419E-5 2.2338768670489528E-4 0.0 1.2436015548519943E-4 2.7635590107822096E-5 16-17 8.751270200810331E-5 2.3259955007416932E-4 0.0 1.2896608716983645E-4 3.454448763477762E-5 18-19 8.751270200810331E-5 2.579321743396729E-4 0.0 1.427838822237475E-4 4.1453385161733146E-5 20-21 8.981566785042181E-5 2.80961832762858E-4 0.0 1.5199574559302152E-4 4.1453385161733146E-5 22-23 9.211863369274032E-5 2.9938555950140603E-4 0.0 1.5890464311997705E-4 4.605931684637016E-5 24-25 9.211863369274032E-5 3.2932411545154663E-4 0.0 1.8193430154316215E-4 5.066524853100718E-5 26-27 9.211863369274032E-5 3.408389446631392E-4 0.0 2.694470035512654E-4 5.987711190028121E-5 28-29 9.211863369274032E-5 3.4544487634777623E-4 0.0 6.931927185378709E-4 5.987711190028121E-5 30-31 9.211863369274032E-5 4.0532198824805743E-4 0.0 0.0018999468199127692 5.987711190028121E-5 32-33 9.442159953505883E-5 4.0532198824805743E-4 0.0 0.004504601187575002 6.908897526955525E-5 34-35 9.672456537737734E-5 4.928346902561608E-4 0.0 0.008373583802670096 7.369490695419227E-5 36-37 9.672456537737734E-5 5.573177338410789E-4 0.0 0.01437050685606749 7.369490695419227E-5 38-39 9.672456537737734E-5 5.7113552889499E-4 0.0 0.02594981911124495 7.369490695419227E-5 40-41 1.0363346290433287E-4 6.586482309030933E-4 0.0 0.06376682120795717 7.369490695419227E-5 42-43 1.0593642874665138E-4 6.931927185378709E-4 0.0 0.07532080083886913 7.369490695419227E-5 44-45 1.0823939458896989E-4 7.968261814422038E-4 0.0 0.09260916541715417 7.369490695419227E-5 46-47 1.128453262736069E-4 8.843388834503071E-4 0.0 0.11215673948675367 8.290677032346629E-5 48-49 1.151482921159254E-4 8.889448151349442E-4 0.0 0.12994254468697952 9.211863369274032E-5 50-51 1.3126905301215496E-4 0.0010501524240972397 0.0 0.14812676297792643 9.211863369274032E-5 52-53 1.381779505391105E-4 0.0010570613216241951 0.0 0.17988696490934097 1.0133049706201436E-4 54-55 1.381779505391105E-4 0.0010731820825204247 0.0 0.2570593502854342 1.1054236043128838E-4 56-57 1.381779505391105E-4 0.001100817672628247 0.0 0.34377292314625296 1.128453262736069E-4 58-59 1.381779505391105E-4 0.0011146354676821579 0.0 0.4274557929585806 1.151482921159254E-4 60-61 1.381779505391105E-4 0.0011399680919476616 0.0 0.7588986369850603 1.151482921159254E-4 62-63 1.6581354064693258E-4 0.0011814214771093947 0.0 0.7663233988606952 1.1975422380056242E-4 64-65 1.681165064892511E-4 0.001259722315748224 0.0 0.7733750802698744 1.2205718964288092E-4 66-67 1.7732836985852513E-4 0.001273540110802135 0.0 0.7796644799852462 1.2436015548519943E-4 68-69 1.7963133570084364E-4 0.0013080845984369126 0.0 0.7857258860822286 1.2436015548519943E-4 70-71 1.8193430154316215E-4 0.0013288112910177792 0.0 0.7913382138399588 1.2436015548519943E-4 72-73 2.1187285749330276E-4 0.0013449320519140088 0.0 0.7951311985822573 1.4738981390838453E-4 74-75 2.1187285749330276E-4 0.0013909913687603788 0.0 0.7983069884788145 1.4738981390838453E-4 76-77 2.1647878917793978E-4 0.001437050685606749 0.0 0.8012478758594553 1.4969277975070301E-4 78-79 2.302965842318508E-4 0.0014577773781876157 0.0 0.8039999200410259 1.5199574559302152E-4 80-81 2.302965842318508E-4 0.0014600803440299342 0.0 0.805229703800824 1.6581354064693258E-4 82-83 2.302965842318508E-4 0.001478504070768482 0.0 0.8057133266277109 1.8884319907011766E-4 84-85 2.302965842318508E-4 0.0015015337291916673 0.0 0.806219979113021 1.8884319907011766E-4 86-87 2.3259955007416932E-4 0.001545290080195719 0.0 0.8064042163804065 1.8884319907011766E-4 88-89 2.3490251591648783E-4 0.0016304998163615037 0.0 0.8064571845947798 1.8884319907011766E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 25345 0.0 51.65962 1 GTATCAA 46825 0.0 33.13235 1 ATCAACG 56290 0.0 30.169928 3 TCAACGC 56295 0.0 30.151163 4 CAACGCA 58180 0.0 29.18166 5 TATCAAC 58990 0.0 28.500042 2 AACGCAG 60725 0.0 27.98019 6 ACGCAGA 72460 0.0 23.394506 7 CGCAGAG 73265 0.0 23.12575 8 GAGTACT 49125 0.0 19.903345 12-13 GCAGAGT 86695 0.0 19.503014 9 TGGTATC 12350 0.0 18.825495 2 GTGGTAT 12585 0.0 18.578142 1 CAGAGTA 86070 0.0 18.195732 10-11 GTACTTT 54970 0.0 17.660057 14-15 CGAGACC 22985 0.0 16.97088 88-89 GAGACCG 23625 0.0 16.943798 88-89 GACCGAG 23980 0.0 16.846327 90-91 ACGAGAC 24020 0.0 16.754765 86-87 AGACCGA 23940 0.0 16.406713 90-91 >>END_MODULE