##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140386_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8500537 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.388389933483026 31.0 25.0 33.0 18.0 33.0 2 30.93355372725276 33.0 31.0 33.0 27.0 33.0 3 31.154773398433534 33.0 31.0 33.0 27.0 34.0 4 31.169451412304895 33.0 31.0 33.0 28.0 34.0 5 31.325324976527952 33.0 32.0 33.0 28.0 34.0 6 34.796892008116664 37.0 34.0 38.0 29.0 38.0 7 35.235527590786326 38.0 35.0 38.0 29.0 38.0 8 35.52613323134762 38.0 36.0 38.0 29.0 38.0 9 36.14171481166425 38.0 37.0 38.0 33.0 38.0 10-11 36.22746380611014 38.0 37.0 38.0 33.0 38.0 12-13 36.336485389099536 38.0 37.0 38.0 33.0 38.0 14-15 36.31899872913911 38.0 37.0 38.0 33.0 38.0 16-17 36.37477849928776 38.0 37.0 38.0 33.0 38.0 18-19 36.35800114745692 38.0 37.0 38.0 33.0 38.0 20-21 36.414199386812285 38.0 37.5 38.0 33.5 38.0 22-23 36.47549197225855 38.0 38.0 38.0 34.0 38.0 24-25 36.48204632780316 38.0 38.0 38.0 34.0 38.0 26-27 36.44500589942767 38.0 38.0 38.0 34.0 38.0 28-29 36.427175733513394 38.0 38.0 38.0 34.0 38.0 30-31 36.41590640427866 38.0 38.0 38.0 34.0 38.0 32-33 36.391358840370145 38.0 38.0 38.0 34.0 38.0 34-35 36.3664305930329 38.0 38.0 38.0 33.0 38.0 36-37 36.33479714567988 38.0 38.0 38.0 33.0 38.0 38-39 36.334930409705855 38.0 38.0 38.0 33.0 38.0 40-41 36.31234431604226 38.0 38.0 38.0 33.0 38.0 42-43 36.28290219709139 38.0 37.0 38.0 33.0 38.0 44-45 36.22865743752567 38.0 37.0 38.0 33.0 38.0 46-47 36.18049097776262 38.0 37.0 38.0 33.0 38.0 48-49 36.136092631129785 38.0 37.0 38.0 33.0 38.0 50-51 36.11363145235943 38.0 37.0 38.0 33.0 38.0 52-53 36.07816637672976 38.0 37.0 38.0 33.0 38.0 54-55 35.99242023897494 38.0 37.0 38.0 31.0 38.0 56-57 36.020406381974134 38.0 37.0 38.0 31.0 38.0 58-59 36.00494006093402 38.0 37.0 38.0 31.0 38.0 60-61 35.99817128227511 38.0 37.0 38.0 31.0 38.0 62-63 35.98218872027809 38.0 37.0 38.0 31.0 38.0 64-65 35.98346089994858 38.0 37.0 38.0 31.0 38.0 66-67 35.976604421272256 38.0 37.0 38.0 31.0 38.0 68-69 35.95902385710966 38.0 37.0 38.0 31.0 38.0 70-71 35.943629175127136 38.0 37.0 38.0 31.0 38.0 72-73 35.92921907334208 38.0 37.0 38.0 31.0 38.0 74-75 35.911540398763535 38.0 37.0 38.0 31.0 38.0 76-77 35.91690785292373 38.0 37.0 38.0 31.0 38.0 78-79 35.886972922791756 38.0 37.0 38.0 31.0 38.0 80-81 35.869708839475535 38.0 37.0 38.0 31.0 38.0 82-83 35.78012880546859 38.0 37.0 38.0 30.5 38.0 84-85 35.80097431580852 38.0 37.0 38.0 31.0 38.0 86-87 35.806538667434154 38.0 37.0 38.0 31.0 38.0 88-89 35.81361757625304 38.0 37.0 38.0 31.0 38.0 90-91 35.788962417836316 38.0 37.0 38.0 31.0 38.0 92-93 35.75741058093287 38.0 37.0 38.0 31.0 38.0 94-95 35.76721834269176 38.0 37.0 38.0 31.0 38.0 96-97 35.782974512149366 38.0 37.0 38.0 31.0 38.0 98-99 35.796270334723495 38.0 37.0 38.0 31.0 38.0 100-101 35.235014860818254 38.0 35.5 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 5.0 19 21.0 20 89.0 21 599.0 22 2711.0 23 8220.0 24 18309.0 25 33595.0 26 54960.0 27 81435.0 28 113957.0 29 150673.0 30 193825.0 31 243548.0 32 306462.0 33 390816.0 34 524858.0 35 775563.0 36 1495332.0 37 4105559.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.41256452386479 20.22375762848865 16.17269591321113 23.190981934435438 2 14.342999742251578 21.877300222327133 40.854960104285176 22.924739931136116 3 17.847377497040647 26.2215590714624 31.791417622393546 24.139645809103403 4 12.571617534280483 18.350064237118197 38.823782544561595 30.254535684039723 5 13.393745247155001 37.480507524104524 35.33208328826431 13.793663940476167 6 29.108305640961934 38.731545869578106 18.695785771626635 13.464362717833323 7 25.830344600582293 33.37822069358677 23.079741903364457 17.71169280246648 8 24.327239561453588 36.942583745003404 20.84972984647911 17.880446847063897 9 25.299425201019655 17.16096288975626 21.376649498731666 36.16296241049242 10-11 24.028664306737326 27.14262640113207 28.658354172212885 20.17035511991772 12-13 24.944135882238967 24.730884648816893 29.052793958781663 21.272185510162476 14-15 22.063894316323783 25.97645889900838 26.925281308698494 25.034365475969338 16-17 21.285694933964947 29.167503624923807 27.524340118582106 22.022461322529136 18-19 21.38486074468001 28.077932017706647 29.651685534690337 20.885521702923004 20-21 22.29907993674841 27.100594040979185 29.59450619589959 21.005819826372818 22-23 22.055776497765926 26.969542759920795 29.491356567001393 21.483324175311886 24-25 21.690903189669307 27.210709703023934 29.558219573173712 21.540167534133047 26-27 21.62485401739882 27.33429180139117 29.490044704450252 21.55080947675976 28-29 21.574467003008426 27.350621098927284 29.51907539058113 21.55583650748316 30-31 21.89398099808378 27.20157186528485 29.394847185656403 21.509599950974962 32-33 21.686624356046366 27.357324754310625 29.361741043629824 21.594309846013186 34-35 21.76586997759173 27.37492742336413 29.40115995946777 21.458042639576362 36-37 21.77376823432918 27.255029510278867 29.39307197095104 21.57813028444092 38-39 21.629114881249254 27.388553263967797 29.411983704034633 21.570348150748316 40-41 21.824376262399113 27.266449851097637 29.340055385618886 21.56911850088437 42-43 21.74043291547407 27.332572048414335 29.157155901688313 21.769839134423286 44-45 21.7678912570029 27.45877574807423 28.992141230401884 21.781191764520983 46-47 21.887315309608468 27.489279577246766 28.680298780294077 21.943106332850686 48-49 21.81845813044805 27.632129213014373 28.630346247680272 21.919066408857308 50-51 21.805870771837437 27.704482594839547 28.516240931483434 21.97340570183958 52-53 21.945280129945203 27.645010900739752 28.38234183699625 22.027367132318794 54-55 21.95372588857012 27.59886615967213 28.360826439661274 22.08658151209648 56-57 21.906981444110706 27.65305467716323 28.415656172192588 22.024307706533474 58-59 21.92301939137897 27.66384791791991 28.453104880503783 21.96002781019734 60-61 21.844847158885482 27.49857749625987 28.61444797033335 22.042127374521296 62-63 21.99212920386777 27.60568765445385 28.516088437139874 21.886094704538507 64-65 21.72051180400753 27.62346166365246 28.43892340800323 22.217103124336784 66-67 21.79367291600314 27.70100143175712 28.314300888242855 22.191024763996882 68-69 21.761321287449956 27.808776380477212 28.35569770091315 22.07420463115968 70-71 21.757837113317184 27.6343165805791 28.41799908946992 22.189847216633794 72-73 21.828177219104575 27.673833870203623 28.167597486847146 22.330391423844656 74-75 21.736665675995106 27.769972975401398 28.164221090245572 22.329140258357928 76-77 21.92945878292411 27.48061838627246 28.23005148288028 22.35987134792315 78-79 21.922131348889245 27.492884933101774 28.1343669731483 22.45061674486068 80-81 22.159123697157668 27.51414070789815 27.96803117830707 22.358704416637114 82-83 22.149552395618688 27.701524587726173 28.024308142212284 22.12461487444286 84-85 22.043275766619843 27.56745099970832 27.957295372629797 22.43197786104204 86-87 21.932083271033108 27.833190061191686 27.967743846759234 22.266982821015972 88-89 22.22249389661592 27.554417660982562 27.892127099025316 22.330961343376202 90-91 22.29408913599344 27.758026490769343 27.980196512982587 21.967687860254628 92-93 22.102209429493705 27.721773019814922 27.918280734808874 22.2577368158825 94-95 22.200227192097504 27.55247702174195 27.9922620636577 22.255033722502844 96-97 22.171265111063352 27.83658235697003 28.006640778225083 21.985511753741534 98-99 22.41636363165698 28.281199339115105 28.171165110558434 21.13127191866948 100-101 22.81128556651048 30.80118747576624 25.614979359923502 20.772547597799782 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2379.0 1 2183.0 2 2587.0 3 3396.0 4 4129.5 5 5674.5 6 7420.0 7 10774.0 8 14346.0 9 15348.0 10 14299.5 11 12966.5 12 13609.0 13 16935.5 14 24555.0 15 34157.0 16 40852.0 17 43574.5 18 42806.0 19 39267.5 20 35185.0 21 31988.0 22 31290.5 23 34835.0 24 42653.0 25 54815.0 26 70450.0 27 87622.5 28 105880.0 29 126754.5 30 146362.0 31 165721.5 32 187311.0 33 207916.0 34 227616.0 35 245908.5 36 264307.5 37 282575.5 38 297029.0 39 305246.5 40 313850.5 41 325002.0 42 332269.0 43 338060.5 44 344741.5 45 350561.5 46 353056.0 47 353923.5 48 352241.5 49 344901.0 50 335100.5 51 324284.0 52 311003.5 53 295827.0 54 278174.5 55 257128.5 56 235246.5 57 211823.5 58 187684.5 59 161829.5 60 133475.0 61 107354.5 62 83583.5 63 63282.5 64 47724.0 65 35708.0 66 26447.5 67 19484.0 68 14398.0 69 10380.0 70 7277.0 71 5014.5 72 3425.0 73 2214.5 74 1410.0 75 894.0 76 554.0 77 337.0 78 219.5 79 150.0 80 104.5 81 78.0 82 61.5 83 49.0 84 35.5 85 23.0 86 16.0 87 10.5 88 6.0 89 4.0 90 3.0 91 2.5 92 2.0 93 1.5 94 1.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.004411486003766586 4 0.0 5 0.05070267913662396 6 1.1763962676710895E-5 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 1.588134961355971E-4 18-19 0.0 20-21 0.0 22-23 1.1764933568420236E-5 24-25 0.0 26-27 2.5889632496666707E-4 28-29 1.353873039319593E-4 30-31 1.1784863544832744E-5 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 7.869093156019662E-5 44-45 6.101149865411685E-6 46-47 8.496960366359377E-4 48-49 0.0016091598098234051 50-51 0.0023935673941482415 52-53 0.0055554952307336055 54-55 0.007271916405506976 56-57 0.005993384993409198 58-59 0.008175385044826856 60-61 0.00749363608141693 62-63 0.006557259157199338 64-65 0.0063156946792777505 66-67 0.001363622969291011 68-69 0.002296609847957041 70-71 4.1369063725855217E-4 72-73 0.0018078727104216604 74-75 0.0022531510594025997 76-77 6.140339982251626E-4 78-79 0.0 80-81 1.6385910710037846E-4 82-83 0.0 84-85 0.0 86-87 5.88084381287449E-5 88-89 0.0 90-91 0.0 92-93 0.0 94-95 7.164704539140781E-4 96-97 2.3436932386793757E-5 98-99 6.148029669744026E-4 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 108.0 20-21 433.0 22-23 783.0 24-25 1160.0 26-27 2639.0 28-29 6237.0 30-31 15736.0 32-33 20216.0 34-35 27881.0 36-37 44615.0 38-39 52181.0 40-41 53952.0 42-43 61592.0 44-45 73607.0 46-47 73961.0 48-49 69818.0 50-51 62229.0 52-53 53670.0 54-55 56329.0 56-57 58418.0 58-59 34938.0 60-61 66061.0 62-63 63657.0 64-65 66180.0 66-67 70612.0 68-69 72019.0 70-71 73223.0 72-73 67311.0 74-75 67852.0 76-77 71062.0 78-79 74804.0 80-81 75550.0 82-83 71951.0 84-85 70087.0 86-87 72762.0 88-89 77280.0 90-91 79687.0 92-93 79422.0 94-95 84636.0 96-97 133759.0 98-99 735544.0 100-101 5556575.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.52204978314084 #Duplication Level Percentage of deduplicated Percentage of total 1 87.80797855821282 72.46094377937803 2 8.248388206495395 13.613478044141697 3 2.1821386975666615 5.402236747029425 4 0.8185140402223439 2.701818255017121 5 0.3715823161887908 1.533186719753309 6 0.1965769999677687 0.9733162186536413 7 0.1144233317470219 0.6609713515146409 8 0.07454953966407654 0.49215846587753265 9 0.050590100947995535 0.3757318946068147 >10 0.13298438566551418 1.5789505391672356 >50 0.0016628074523327113 0.08948583986427402 >100 5.385328403044587E-4 0.0732002667397873 >500 7.248302894173806E-5 0.04452187825649212 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.1763962676710895E-5 0.0 2 0.0 0.0 0.0 2.352792535342179E-5 0.0 3 0.0 0.0 0.0 2.352792535342179E-5 0.0 4 0.0 3.529188803013268E-5 0.0 3.529188803013268E-5 0.0 5 0.0 4.705585070684358E-5 0.0 4.705585070684358E-5 0.0 6 3.529188803013268E-5 4.705585070684358E-5 0.0 4.705585070684358E-5 0.0 7 3.529188803013268E-5 4.705585070684358E-5 0.0 4.705585070684358E-5 0.0 8 3.529188803013268E-5 4.705585070684358E-5 0.0 4.705585070684358E-5 0.0 9 3.529188803013268E-5 7.058377606026537E-5 0.0 7.058377606026537E-5 0.0 10-11 4.1173869368488135E-5 7.058377606026537E-5 0.0 1.2940358944381984E-4 0.0 12-13 4.705585070684358E-5 7.058377606026537E-5 0.0 1.4116755212053073E-4 0.0 14-15 4.705585070684358E-5 9.999368275204261E-5 0.0 1.4116755212053073E-4 0.0 16-17 8.234773873697626E-5 1.0587566409039805E-4 0.0 1.5881349613559707E-4 0.0 18-19 8.234773873697626E-5 1.2940358944381984E-4 0.0 2.2939727219586245E-4 0.0 20-21 8.234773873697626E-5 1.5293151479724162E-4 0.0 2.588071788876397E-4 5.881981338355448E-6 22-23 8.234773873697626E-5 1.8822340282737433E-4 0.0 2.76453122902706E-4 2.352792535342179E-5 24-25 8.234773873697626E-5 2.0586934684244066E-4 0.0 3.117450109328387E-4 4.705585070684358E-5 26-27 8.822972007533172E-5 2.117513281807961E-4 0.0 3.9997473100817043E-4 5.293783204519903E-5 28-29 1.1763962676710895E-4 2.117513281807961E-4 0.0 7.587755926478527E-4 5.881981338355447E-5 30-31 1.1763962676710895E-4 2.352792535342179E-4 0.0 0.002405730367387378 6.470179472190992E-5 32-33 1.235216081054644E-4 2.470432162109288E-4 0.0 0.005752577748911627 8.234773873697626E-5 34-35 1.2940358944381984E-4 2.76453122902706E-4 0.0 0.009928784499143996 8.234773873697626E-5 36-37 1.2940358944381984E-4 3.0586302959448324E-4 0.0 0.01609898292307886 8.234773873697626E-5 38-39 1.2940358944381984E-4 3.352729362862605E-4 0.0 0.029156981494227956 9.411170141368716E-5 40-41 1.2940358944381984E-4 3.5291888030132687E-4 0.0 0.07098375079127353 9.411170141368716E-5 42-43 1.2940358944381984E-4 3.5291888030132687E-4 0.0 0.08394763766100895 9.411170141368716E-5 44-45 1.2940358944381984E-4 3.9997473100817043E-4 0.0 0.10224059962329438 9.411170141368716E-5 46-47 1.2940358944381984E-4 4.47030581715014E-4 0.0 0.12326280092657677 9.411170141368716E-5 48-49 1.3528557078217528E-4 4.47030581715014E-4 0.0 0.14254981773504427 9.411170141368716E-5 50-51 1.5881349613559707E-4 5.176143577752795E-4 0.0 0.16207799577838436 9.411170141368716E-5 52-53 1.6469547747395251E-4 5.293783204519903E-4 0.0 0.1961170217834473 1.117576454287535E-4 54-55 1.6469547747395251E-4 5.293783204519903E-4 0.0 0.27734718406613607 1.2940358944381984E-4 56-57 1.6469547747395251E-4 5.411422831287011E-4 0.0 0.3658180653763403 1.3528557078217528E-4 58-59 1.6469547747395251E-4 5.411422831287011E-4 0.0 0.4549653745404555 1.5293151479724162E-4 60-61 1.6469547747395251E-4 5.470242644670567E-4 0.0 0.8318768567209343 1.6469547747395251E-4 62-63 2.117513281807961E-4 5.587882271437675E-4 0.0 0.8407233566538208 1.9998736550408522E-4 64-65 2.117513281807961E-4 6.528999285574546E-4 0.0 0.8491816458183759 1.9998736550408522E-4 66-67 2.23515290857507E-4 6.70545872572521E-4 0.0 0.8564576567339216 1.9998736550408522E-4 68-69 2.23515290857507E-4 6.881918165875874E-4 0.0 0.863563090190655 1.9998736550408522E-4 70-71 2.2939727219586245E-4 7.117197419410092E-4 0.0 0.8702038471216583 1.9998736550408522E-4 72-73 3.1762699227119414E-4 7.176017232793646E-4 0.0 0.8746565069947934 1.9998736550408522E-4 74-75 3.1762699227119414E-4 7.587755926478527E-4 0.0 0.8783974471259874 1.9998736550408522E-4 76-77 3.293909549479051E-4 7.999494620163409E-4 0.0 0.881650182806098 1.9998736550408522E-4 78-79 3.41154917624616E-4 8.117134246930517E-4 0.0 0.8847205770647195 1.9998736550408522E-4 80-81 3.41154917624616E-4 8.117134246930517E-4 0.0 0.8861969543806467 2.0586934684244066E-4 82-83 3.41154917624616E-4 8.117134246930517E-4 0.0 0.8866851588317304 2.352792535342179E-4 84-85 3.588008616396823E-4 8.175954060314072E-4 0.0 0.8872204191335207 2.352792535342179E-4 86-87 3.7056482431639323E-4 8.470053127231844E-4 0.0 0.8874556983870548 2.352792535342179E-4 88-89 3.7644680565474865E-4 8.705332380766062E-4 0.0 0.8875439281071301 2.352792535342179E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12295 0.0 54.09052 1 GTATCAA 23300 0.0 38.945305 1 ATCAACG 29975 0.0 30.100088 3 TCAACGC 30090 0.0 30.041676 4 TATCAAC 30975 0.0 29.337189 2 CAACGCA 30805 0.0 29.330395 5 AACGCAG 31710 0.0 28.533266 6 GTGGTAT 5505 0.0 24.913519 1 ACGCAGA 36330 0.0 24.892893 7 CGCAGAG 36865 0.0 24.484867 8 TGGTATC 5480 0.0 24.161457 2 GCAGAGT 42175 0.0 21.289698 9 CGAGACC 8940 0.0 21.066902 88-89 GAGACCG 9215 0.0 21.019537 88-89 ACGAGAC 9130 0.0 20.93467 86-87 GACCGAG 9325 0.0 20.85252 90-91 ACCGAGG 9495 0.0 20.680546 92-93 AGACCGA 9240 0.0 20.549185 90-91 CACGAGA 9395 0.0 19.84002 86-87 GAGTACT 23955 0.0 19.79392 12-13 >>END_MODULE