##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140385_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5978489 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.829764510731724 32.0 30.0 33.0 18.0 33.0 2 30.954649577844837 33.0 31.0 33.0 27.0 33.0 3 30.073817481306733 32.0 29.0 33.0 18.0 33.0 4 30.51757408937275 33.0 31.0 33.0 27.0 33.0 5 30.68391494907827 33.0 31.0 33.0 25.0 33.0 6 33.9554660048718 37.0 33.0 38.0 26.0 38.0 7 35.46568338588563 38.0 36.0 38.0 30.0 38.0 8 35.490904808890676 38.0 36.0 38.0 29.0 38.0 9 36.054771364470184 38.0 37.0 38.0 31.0 38.0 10-11 36.22326360389724 38.0 37.0 38.0 33.0 38.0 12-13 36.3307294702725 38.0 37.0 38.0 33.0 38.0 14-15 36.3706504268888 38.0 37.0 38.0 33.0 38.0 16-17 36.420224073340265 38.0 37.5 38.0 33.5 38.0 18-19 36.39533617942594 38.0 38.0 38.0 33.5 38.0 20-21 36.4508361033211 38.0 38.0 38.0 34.0 38.0 22-23 36.49839739300186 38.0 38.0 38.0 34.0 38.0 24-25 36.50771107235076 38.0 38.0 38.0 34.0 38.0 26-27 36.4630428934675 38.0 38.0 38.0 34.0 38.0 28-29 36.44817990112274 38.0 38.0 38.0 34.0 38.0 30-31 36.43580797506826 38.0 38.0 38.0 34.0 38.0 32-33 36.41415812490954 38.0 38.0 38.0 34.0 38.0 34-35 36.39182684080897 38.0 38.0 38.0 34.0 38.0 36-37 36.355379324718825 38.0 38.0 38.0 33.0 38.0 38-39 36.35009167473535 38.0 38.0 38.0 33.0 38.0 40-41 36.326540022383185 38.0 38.0 38.0 33.0 38.0 42-43 36.28816836162572 38.0 37.0 38.0 33.0 38.0 44-45 36.23252685189899 38.0 37.0 38.0 33.0 38.0 46-47 36.18703244387599 38.0 37.0 38.0 33.0 38.0 48-49 36.14384835129769 38.0 37.0 38.0 33.0 38.0 50-51 36.12339373045896 38.0 37.0 38.0 33.0 38.0 52-53 36.09423863192983 38.0 37.0 38.0 33.0 38.0 54-55 36.01023363672182 38.0 37.0 38.0 31.0 38.0 56-57 36.03846846238703 38.0 37.0 38.0 31.5 38.0 58-59 36.023970458435485 38.0 37.0 38.0 31.5 38.0 60-61 36.020380246749156 38.0 37.0 38.0 31.0 38.0 62-63 36.00342385601979 38.0 37.0 38.0 31.0 38.0 64-65 36.00687035130218 38.0 37.0 38.0 31.0 38.0 66-67 36.00133390790684 38.0 37.0 38.0 31.0 38.0 68-69 35.98506968575441 38.0 37.0 38.0 31.0 38.0 70-71 35.97036804198086 38.0 37.0 38.0 31.0 38.0 72-73 35.95673459391098 38.0 37.0 38.0 31.0 38.0 74-75 35.940386303481745 38.0 37.0 38.0 31.0 38.0 76-77 35.945719521119614 38.0 37.0 38.0 31.0 38.0 78-79 35.91842300378374 38.0 37.0 38.0 31.0 38.0 80-81 35.906060214232895 38.0 37.0 38.0 31.0 38.0 82-83 35.81653842419904 38.0 37.0 38.0 31.0 38.0 84-85 35.838054225402246 38.0 37.0 38.0 31.0 38.0 86-87 35.84495957451475 38.0 37.0 38.0 31.0 38.0 88-89 35.85268474594905 38.0 37.0 38.0 31.0 38.0 90-91 35.829384020927336 38.0 37.0 38.0 31.0 38.0 92-93 35.79857889466561 38.0 37.0 38.0 31.0 38.0 94-95 35.8057662141517 38.0 37.0 38.0 31.0 38.0 96-97 35.82006512054386 38.0 37.0 38.0 31.0 38.0 98-99 35.82444451980108 38.0 37.0 38.0 31.0 38.0 100-101 35.2346654690552 38.0 35.5 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 7.0 20 65.0 21 439.0 22 1942.0 23 5844.0 24 12958.0 25 24255.0 26 38855.0 27 57080.0 28 79485.0 29 106322.0 30 134468.0 31 169790.0 32 212643.0 33 272177.0 34 367867.0 35 547355.0 36 1068958.0 37 2877978.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.348221766402844 20.242322098443267 14.785408152461265 24.624047982692616 2 13.872702617668109 20.797161289416106 43.00479602789267 22.32534006502312 3 18.111260672262414 25.625256033097415 30.42187563511681 25.84160765952336 4 12.083454531738704 18.3351512397196 40.560850743390176 29.020543485151517 5 13.459451363140767 36.93325333808619 35.65508660154919 13.952208697223847 6 28.457730449571866 39.07763969752887 19.155696222857685 13.308933630041576 7 25.429100898236996 33.60004509500645 23.36352881137692 17.607325195379637 8 23.467267398166992 37.42676452193857 21.374865789666924 17.73110229022751 9 24.773416828232016 17.788725545869532 21.946515248250854 35.4913423776476 10-11 23.336164037434877 27.578172344216075 29.125595112745046 19.96006850560401 12-13 24.37738866793934 25.07572565576352 29.46526287829584 21.081622798001302 14-15 21.59954630676748 26.53864546710716 27.296612906706024 24.565195319419338 16-17 20.82618477837431 29.874821045680335 27.91893961024548 21.380054565699883 18-19 20.80622712528199 28.723704267081533 30.122184719249294 20.347883888387184 20-21 21.59493534529623 27.727840379340602 30.17647440591706 20.500749869446107 22-23 21.356769356368893 27.602643352421648 30.06199053025377 20.978596760955693 24-25 21.106270116460184 27.759236601901133 30.13856962646736 20.99592365517132 26-27 21.0249641583043 27.90628529111354 30.074681737370828 20.994068813211328 28-29 20.923141968653823 27.884082189850247 30.180086765288998 21.012689076206932 30-31 21.22730908328533 27.82066937811679 30.050022812265233 20.90199872633264 32-33 21.024841664185363 27.955885031532084 30.028687498893586 20.990585805388967 34-35 21.149262745642833 27.959659435596052 30.003143407497458 20.887934411263657 36-37 21.141423037305803 27.849560003547413 29.976176474832144 21.032840484314637 38-39 20.98790107675727 28.0021762916665 30.03418178802407 20.975740843552153 40-41 21.207007454771766 27.90635427785447 29.92205111838625 20.96458714898752 42-43 21.129071262737277 27.93322640052278 29.79774405545213 21.139958281287814 44-45 21.179928287693023 28.06192406560549 29.604760611710706 21.15338703499078 46-47 21.26326054742265 28.043940753262348 29.35235217964015 21.340446519674853 48-49 21.17396385354613 28.183499273168177 29.34663190736896 21.29590496591674 50-51 21.170520065253086 28.347741063346838 29.187000833420353 21.294738037979727 52-53 21.355501893451887 28.29200601515846 29.043998627535238 21.30849346385441 54-55 21.33461232302092 28.23020025579794 29.053914334522883 21.381273086658258 56-57 21.264394353646434 28.270157270704082 29.095543809195913 21.369904566453567 58-59 21.21995967816839 28.301135885333693 29.135527223488765 21.343377213009152 60-61 21.239537590430377 28.169466832915163 29.202451219094993 21.388544357559468 62-63 21.32663436512401 28.22123202284974 29.23167714148028 21.22045647054597 64-65 21.137807297266633 28.209243563816074 29.157956354725105 21.49499278419219 66-67 21.21908824325422 28.30702522101075 28.975223332014384 21.498663203720643 68-69 21.173238160779132 28.469785012668254 29.007738868427978 21.34923795812464 70-71 21.16958434489565 28.2232511250062 29.110375345300337 21.496789184797812 72-73 21.22883689412124 28.276209610071056 28.819972226331537 21.674981269476167 74-75 21.122738022919997 28.380633860610853 28.80578732090206 21.69084079556709 76-77 21.30471155649369 28.126713870743696 28.907993961256928 21.660580611505686 78-79 21.336112757372298 28.16332268435662 28.760107864207633 21.740456694063454 80-81 21.484311189611795 28.194321011640273 28.590552254150104 21.73081554459783 82-83 21.494536931603353 28.369297876844573 28.671526939638188 21.464638251913883 84-85 21.40172594580316 28.2110617252532 28.62688411656315 21.760328212380486 86-87 21.29910447397306 28.422475361732886 28.64875682336383 21.62966334093023 88-89 21.549186692886167 28.24008280273725 28.60280638910516 21.60792411527142 90-91 21.61110484031708 28.39376150314975 28.649734278989804 21.345399377543366 92-93 21.460957194675863 28.372292967170644 28.597123150132898 21.569626688020595 94-95 21.518689277247105 28.3054224845016 28.625516833897315 21.550371404353978 96-97 21.483185233250925 28.49735886696734 28.692582840411212 21.326873059370524 98-99 21.748971405419653 28.892259834784507 28.807406390608797 20.551362369187043 100-101 22.117290512861878 31.502764931532028 26.379606088358727 20.000338467247364 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1644.0 1 1451.0 2 1653.5 3 2192.0 4 2608.5 5 3512.5 6 4652.0 7 6560.0 8 9052.0 9 10371.0 10 9864.5 11 9112.0 12 9666.0 13 11708.5 14 16216.5 15 22039.0 16 26865.0 17 29778.5 18 30044.5 19 28195.5 20 25932.5 21 24546.0 22 24738.5 23 27852.5 24 34224.0 25 43756.0 26 56610.0 27 71001.0 28 86342.5 29 102024.5 30 117182.5 31 132375.5 32 148336.5 33 164103.5 34 178531.0 35 191520.5 36 205552.5 37 216900.0 38 224340.0 39 231281.5 40 238024.5 41 243401.5 42 245079.5 43 245956.0 44 246918.0 45 245968.5 46 242764.0 47 238078.0 48 231691.0 49 223570.5 50 214798.5 51 204454.0 52 191950.0 53 178051.0 54 164178.5 55 150601.0 56 136459.5 57 122493.0 58 108493.5 59 92953.5 60 76634.0 61 61295.0 62 47255.0 63 35640.5 64 26492.0 65 19375.0 66 14036.0 67 10394.5 68 7771.5 69 5672.5 70 4065.0 71 2853.5 72 1970.5 73 1277.0 74 816.5 75 525.5 76 327.0 77 195.0 78 130.0 79 81.5 80 46.0 81 29.0 82 21.0 83 17.0 84 12.5 85 6.0 86 2.5 87 3.5 88 4.5 89 3.0 90 1.5 91 0.5 92 0.0 93 0.5 94 1.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.004315471685236855 4 0.0 5 0.05242127233152056 6 1.672663443890254E-5 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 1.338130755112203E-4 18-19 0.0 20-21 8.363477396740537E-6 22-23 0.0 24-25 0.0 26-27 2.1751346471090828E-4 28-29 1.7574635081532499E-4 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 9.429692214846107E-5 44-45 0.0 46-47 0.001131108431447564 48-49 0.0016312339556958614 50-51 0.002888706614740619 52-53 0.006063515233159497 54-55 0.007583923084710633 56-57 0.006318332154721374 58-59 0.008363058585264056 60-61 0.007678576952259994 62-63 0.006781727533282243 64-65 0.006849309378227634 66-67 0.0014978667028883708 68-69 0.002364246513228944 70-71 4.826704737694624E-4 72-73 0.0020137890146568528 74-75 0.0027034372617355394 76-77 7.179226578040085E-4 78-79 0.0 80-81 2.1741035997917998E-4 82-83 0.0 84-85 1.0066875259033284E-5 86-87 4.0634140459423814E-5 88-89 0.0 90-91 0.0 92-93 0.0 94-95 9.32130122822973E-4 96-97 4.290163491695423E-5 98-99 6.979670546255607E-4 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 67.0 20-21 221.0 22-23 509.0 24-25 760.0 26-27 1644.0 28-29 3774.0 30-31 9163.0 32-33 12593.0 34-35 17799.0 36-37 27567.0 38-39 30890.0 40-41 32246.0 42-43 37329.0 44-45 45473.0 46-47 46442.0 48-49 42383.0 50-51 37779.0 52-53 32553.0 54-55 35042.0 56-57 35884.0 58-59 22092.0 60-61 40663.0 62-63 38924.0 64-65 41384.0 66-67 44689.0 68-69 45797.0 70-71 45475.0 72-73 41805.0 74-75 42582.0 76-77 45544.0 78-79 47674.0 80-81 48306.0 82-83 45554.0 84-85 44448.0 86-87 46869.0 88-89 49805.0 90-91 51795.0 92-93 51565.0 94-95 54574.0 96-97 90070.0 98-99 518954.0 100-101 4069802.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.69867441609719 #Duplication Level Percentage of deduplicated Percentage of total 1 91.66318959619082 81.30403409933515 2 6.252274088749911 11.09136847516458 3 1.256885275253104 3.344521734241853 4 0.41835838298196143 1.4843133600544756 5 0.1704574235384066 0.7559673756119953 6 0.07857325426280773 0.41816060986020015 7 0.04993403992628398 0.3100358204791302 8 0.029613705129981675 0.21013571116628413 9 0.021162344774872447 0.1689364736160846 >10 0.058297031905552424 0.7804686356270337 >50 8.482002006646691E-4 0.0529340104558087 >100 3.546684987738625E-4 0.050971594355423026 >500 5.198858683802153E-5 0.02815210003193665 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.672663443890254E-5 0.0 0.0 0.0 3 0.0 1.672663443890254E-5 0.0 0.0 0.0 4 0.0 5.0179903316707617E-5 0.0 3.345326887780508E-5 0.0 5 0.0 5.0179903316707617E-5 0.0 3.345326887780508E-5 0.0 6 1.672663443890254E-5 5.0179903316707617E-5 0.0 3.345326887780508E-5 0.0 7 1.672663443890254E-5 5.0179903316707617E-5 0.0 5.0179903316707617E-5 0.0 8 1.672663443890254E-5 8.36331721945127E-5 0.0 5.0179903316707617E-5 1.672663443890254E-5 9 1.672663443890254E-5 1.338130755112203E-4 0.0 6.690653775561016E-5 3.345326887780508E-5 10-11 1.672663443890254E-5 1.338130755112203E-4 0.0 7.526985497506142E-5 3.345326887780508E-5 12-13 1.672663443890254E-5 1.338130755112203E-4 0.0 9.199648941396396E-5 3.345326887780508E-5 14-15 1.672663443890254E-5 1.7562966160847667E-4 0.0 1.087231238528665E-4 4.181658609725635E-5 16-17 6.690653775561016E-5 1.8399297882792793E-4 0.0 1.1708644107231777E-4 5.0179903316707617E-5 18-19 6.690653775561016E-5 2.0908293048628175E-4 0.0 1.421763927306716E-4 5.0179903316707617E-5 20-21 6.690653775561016E-5 2.3417288214463554E-4 0.0 1.8399297882792793E-4 5.0179903316707617E-5 22-23 6.690653775561016E-5 2.3417288214463554E-4 0.0 2.0071961326683047E-4 6.690653775561016E-5 24-25 6.690653775561016E-5 3.010794199002457E-4 0.0 2.0908293048628175E-4 8.36331721945127E-5 26-27 6.690653775561016E-5 3.345326887780508E-4 0.0 3.0944273711969693E-4 8.36331721945127E-5 28-29 6.690653775561016E-5 3.345326887780508E-4 0.0 6.52338743117199E-4 8.36331721945127E-5 30-31 6.690653775561016E-5 3.5962264043640457E-4 0.0 0.001798113202182023 8.36331721945127E-5 32-33 6.690653775561016E-5 3.6798595765585586E-4 0.0 0.00434892495411466 1.1708644107231777E-4 34-35 6.690653775561016E-5 4.181658609725635E-4 0.0 0.0077109784763340706 1.1708644107231777E-4 36-37 6.690653775561016E-5 4.683457642892711E-4 0.0 0.013063501496782884 1.1708644107231777E-4 38-39 6.690653775561016E-5 5.101623503865274E-4 0.0 0.024471066184114414 1.338130755112203E-4 40-41 6.690653775561016E-5 5.352523020448812E-4 0.0 0.06077622623375237 1.338130755112203E-4 42-43 6.690653775561016E-5 5.770688881421376E-4 0.0 0.07097110992426348 1.338130755112203E-4 44-45 6.690653775561016E-5 6.690653775561016E-4 0.0 0.08553164520332812 1.338130755112203E-4 46-47 6.690653775561016E-5 7.192452808728091E-4 0.0 0.10233354949720573 1.338130755112203E-4 48-49 8.36331721945127E-5 7.192452808728091E-4 0.0 0.11875074119898857 1.338130755112203E-4 50-51 8.36331721945127E-5 8.196050875062244E-4 0.0 0.13500902987360186 1.338130755112203E-4 52-53 8.36331721945127E-5 8.196050875062244E-4 0.0 0.1623403505467686 1.5053970995012285E-4 54-55 8.36331721945127E-5 8.196050875062244E-4 0.0 0.22988250041105707 1.672663443890254E-4 56-57 8.36331721945127E-5 8.363317219451269E-4 0.0 0.3083136892950711 1.672663443890254E-4 58-59 8.36331721945127E-5 8.363317219451269E-4 0.0 0.3867532414963045 1.672663443890254E-4 60-61 9.199648941396396E-5 8.363317219451269E-4 0.0 0.7087242278107395 1.672663443890254E-4 62-63 1.338130755112203E-4 8.530583563840295E-4 0.0 0.715757777592298 1.8399297882792793E-4 64-65 1.338130755112203E-4 9.03238259700737E-4 0.0 0.723134223379854 1.8399297882792793E-4 66-67 1.338130755112203E-4 9.199648941396396E-4 0.0 0.7295488876871732 1.8399297882792793E-4 68-69 1.338130755112203E-4 9.199648941396396E-4 0.0 0.7357042891606893 1.8399297882792793E-4 70-71 1.421763927306716E-4 9.283282113590909E-4 0.0 0.7411237187188937 2.17446247705733E-4 72-73 1.5053970995012285E-4 9.366915285785422E-4 0.0 0.7450293878603774 2.3417288214463554E-4 74-75 1.5053970995012285E-4 9.534181630174447E-4 0.0 0.748098725279916 2.3417288214463554E-4 76-77 1.5053970995012285E-4 9.95234749114701E-4 0.0 0.7505073606391179 2.3417288214463554E-4 78-79 1.5053970995012285E-4 0.0010035980663341522 0.0 0.752974539218856 2.3417288214463554E-4 80-81 1.5053970995012285E-4 0.0010119613835536034 0.0 0.7540952237262626 2.425361993640868E-4 82-83 1.5053970995012285E-4 0.0010203247007730548 0.0 0.7546806559316241 2.5089951658353806E-4 84-85 1.5053970995012285E-4 0.0010286880179925062 0.0 0.7550570052064995 2.5089951658353806E-4 86-87 1.5053970995012285E-4 0.00105377796965086 0.0 0.7552911780886442 2.5089951658353806E-4 88-89 1.5053970995012285E-4 0.0011206845074064702 0.0 0.7553580846263998 2.5089951658353806E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8615 0.0 51.151928 1 GTATCAA 16495 0.0 39.80889 1 TCAACGC 19710 0.0 33.18014 4 ATCAACG 19600 0.0 32.790085 3 CAACGCA 20230 0.0 32.240997 5 TATCAAC 20385 0.0 31.762821 2 AACGCAG 20745 0.0 31.4645 6 TGGTATC 3885 0.0 31.1089 2 GTGGTAT 4390 0.0 29.816221 1 ACGCAGA 23895 0.0 27.280144 7 CGCAGAG 24325 0.0 26.77998 8 GCAGAGT 27985 0.0 23.261995 9 GAGTACT 16995 0.0 21.525501 12-13 GAGACCG 5135 0.0 20.130999 88-89 CGAGACC 5075 0.0 20.096687 88-89 GACCGAG 5325 0.0 19.654978 90-91 CAGAGTA 27600 0.0 19.644873 10-11 AGACCGA 5230 0.0 19.583935 90-91 AGAGTAC 25630 0.0 19.360037 10-11 ACCGAGG 5495 0.0 19.254221 92-93 >>END_MODULE