##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140384_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8876479 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.513886418252103 30.0 18.0 32.0 18.0 33.0 2 30.269593833320624 32.0 29.0 33.0 25.0 33.0 3 30.854084710840866 33.0 31.0 33.0 27.0 33.0 4 31.363077972696157 33.0 31.0 33.0 28.0 34.0 5 31.87031096451645 33.0 32.0 33.0 30.0 34.0 6 35.50818055222121 38.0 36.0 38.0 29.0 38.0 7 35.963474706581295 38.0 37.0 38.0 31.0 38.0 8 36.10751605450765 38.0 37.0 38.0 33.0 38.0 9 36.36800481362035 38.0 37.0 38.0 33.0 38.0 10-11 36.420878312222676 38.0 37.5 38.0 33.5 38.0 12-13 36.457404957528766 38.0 38.0 38.0 34.0 38.0 14-15 36.43961181004315 38.0 38.0 38.0 34.0 38.0 16-17 36.45095859518172 38.0 38.0 38.0 34.0 38.0 18-19 36.39860720675394 38.0 37.5 38.0 33.5 38.0 20-21 36.42938392575429 38.0 38.0 38.0 33.5 38.0 22-23 36.4663068921807 38.0 38.0 38.0 34.0 38.0 24-25 36.469720575801716 38.0 38.0 38.0 34.0 38.0 26-27 36.414811793683334 38.0 38.0 38.0 34.0 38.0 28-29 36.39324135616221 38.0 38.0 38.0 33.5 38.0 30-31 36.38312951023481 38.0 38.0 38.0 33.5 38.0 32-33 36.36105819419106 38.0 38.0 38.0 33.0 38.0 34-35 36.33888920043408 38.0 37.5 38.0 33.0 38.0 36-37 36.30120136501284 38.0 37.0 38.0 33.0 38.0 38-39 36.296806276214824 38.0 37.0 38.0 33.0 38.0 40-41 36.28053997934971 38.0 37.0 38.0 33.0 38.0 42-43 36.24581504393327 38.0 37.0 38.0 33.0 38.0 44-45 36.19253970081594 38.0 37.0 38.0 33.0 38.0 46-47 36.14791413726612 38.0 37.0 38.0 33.0 38.0 48-49 36.103915604534805 38.0 37.0 38.0 33.0 38.0 50-51 36.07402435982272 38.0 37.0 38.0 33.0 38.0 52-53 36.03879402141865 38.0 37.0 38.0 31.5 38.0 54-55 35.95018887380187 38.0 37.0 38.0 31.0 38.0 56-57 35.977343999247374 38.0 37.0 38.0 31.0 38.0 58-59 35.95608492510881 38.0 37.0 38.0 31.0 38.0 60-61 35.948530218155994 38.0 37.0 38.0 31.0 38.0 62-63 35.931514894854956 38.0 37.0 38.0 31.0 38.0 64-65 35.93082159789417 38.0 37.0 38.0 31.0 38.0 66-67 35.92281592574509 38.0 37.0 38.0 31.0 38.0 68-69 35.90330587367828 38.0 37.0 38.0 31.0 38.0 70-71 35.88371942730545 38.0 37.0 38.0 31.0 38.0 72-73 35.870018106238504 38.0 37.0 38.0 31.0 38.0 74-75 35.85584563047729 38.0 37.0 38.0 31.0 38.0 76-77 35.86207276155604 38.0 37.0 38.0 31.0 38.0 78-79 35.8275981647741 38.0 37.0 38.0 31.0 38.0 80-81 35.811966614678056 38.0 37.0 38.0 31.0 38.0 82-83 35.71823297160485 38.0 37.0 38.0 30.0 38.0 84-85 35.738023214324286 38.0 37.0 38.0 30.0 38.0 86-87 35.74181925926152 38.0 37.0 38.0 31.0 38.0 88-89 35.75130746972967 38.0 37.0 38.0 31.0 38.0 90-91 35.72696105413439 38.0 37.0 38.0 31.0 38.0 92-93 35.69463889406723 38.0 36.0 38.0 30.5 38.0 94-95 35.7003338633874 38.0 36.0 38.0 31.0 38.0 96-97 35.7118204976058 38.0 36.0 38.0 31.0 38.0 98-99 35.721184083291206 38.0 36.0 38.0 31.0 38.0 100-101 35.12422143395601 38.0 35.0 38.0 28.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 14.0 20 107.0 21 660.0 22 2915.0 23 8828.0 24 19707.0 25 36261.0 26 58420.0 27 87469.0 28 121570.0 29 159995.0 30 204312.0 31 254141.0 32 318312.0 33 406000.0 34 544906.0 35 804406.0 36 1582511.0 37 4265943.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.279437263356336 20.447071411986666 17.264491922979822 23.008999401677173 2 14.092198043841483 22.572824202028755 41.02162580455606 22.313351949573697 3 19.01650728621819 25.89220923822639 30.982360464981344 24.108923010574077 4 12.768858012281672 19.51999210497766 38.67432120326089 29.036828679479783 5 13.409667731331233 37.67991715318208 36.0725960119825 12.837819103504197 6 29.006380683870336 39.17536887941366 18.72848668131662 13.089763755399384 7 25.62940778657844 33.262332958822974 23.340786363602053 17.76747289099653 8 23.629526977983048 37.789341922624956 21.10464070269304 17.476490396698964 9 24.553834915848956 17.619441222133236 21.783164247896043 36.043559614121776 10-11 23.59949817940199 27.607675295576094 29.033403898099685 19.75942262692223 12-13 24.432046760883456 24.991953453616013 29.419688820308142 21.156310965192393 14-15 21.505300694115313 26.60915437303462 27.117126058654563 24.7684188741955 16-17 20.957360463792554 29.740960608377083 27.89786275927189 21.403816168558475 18-19 21.01520208632274 28.749563875496133 29.74779752196789 20.487436516213243 20-21 21.727810137587948 27.784073866175994 29.83453451584257 20.653581480393484 22-23 21.479840116856316 27.65253948702984 29.714475474623157 21.153144921490686 24-25 21.27355349458761 27.83163624604367 29.734377764081394 21.160432495287328 26-27 21.21957166190468 27.948922950948347 29.68785014426824 21.14365524287873 28-29 21.11497208660708 27.980019127696114 29.75746764500092 21.14754114069589 30-31 21.426384876247024 27.837415931979443 29.677172031054038 21.05902716071949 32-33 21.221928138317388 27.91857301403926 29.662856486935123 21.19664236070823 34-35 21.358243225542402 27.971460867980852 29.627626352976584 21.042669553500165 36-37 21.32852909625218 27.926419160663364 29.597915424487304 21.147136318597155 38-39 21.179846944243973 28.031154206175106 29.68021779362482 21.1087810559561 40-41 21.437259892446992 27.886014251839914 29.56706387575847 21.109661979954623 42-43 21.343290150716506 27.95782438447147 29.383042162140782 21.315843302671244 44-45 21.35816968054131 28.088873210122074 29.26205648398722 21.2909006253494 46-47 21.447538226449694 28.0889956076231 29.001142371625054 21.462323794302147 48-49 21.329463090941474 28.199301292671937 29.004788974784802 21.466446641601785 50-51 21.355332404429014 28.273120790809042 28.90873559838671 21.46281120637524 52-53 21.496052405965816 28.24599436416021 28.80542541683572 21.452527813038255 54-55 21.48544783113251 28.185530649755126 28.815056211484396 21.51396530762797 56-57 21.464351319887975 28.217792538608126 28.79214909824443 21.52570704325947 58-59 21.429289513300045 28.223519806340917 28.861900196947992 21.485290483411045 60-61 21.411194702190738 28.129981134254805 28.936190659531054 21.522633504023407 62-63 21.501770754295197 28.202946242592937 28.93572889258459 21.359554110527277 64-65 21.270720427326676 28.182384250726283 28.890598972068695 21.656296349878346 66-67 21.346117015050076 28.285861499176647 28.730450662958656 21.637570822814624 68-69 21.315020537007303 28.442198172345805 28.729783773987595 21.512997516659293 70-71 21.311359394497124 28.217465170195805 28.853688757911655 21.617486677395412 72-73 21.345191466715864 28.24112895781678 28.59639163859017 21.81728793687719 74-75 21.299239000686452 28.29065969086689 28.574924535090812 21.835176773355844 76-77 21.44135553586651 28.09090422296977 28.64457439741589 21.823165843747827 78-79 21.47271145904182 28.05694473463609 28.575149606664574 21.89519419965751 80-81 21.660478492151096 28.073116739480668 28.401320194779174 21.865084573589062 82-83 21.654110112742327 28.316203668683297 28.420057816019455 21.60962840255492 84-85 21.528722950062118 28.13403026834681 28.417950559392413 21.919296222198657 86-87 21.445887360610215 28.38261307214441 28.438984234247673 21.73251533299771 88-89 21.731833034780987 28.165235442366548 28.35762753703495 21.745303985817515 90-91 21.792528963030353 28.33328478669564 28.387494017601384 21.486692232672624 92-93 21.58071293193664 28.31265109152944 28.38405239077501 21.722583585758912 94-95 21.711490346718634 28.18722041934098 28.43021594953154 21.67107328440884 96-97 21.647794806804583 28.457384476415303 28.458648553326444 21.43617216345367 98-99 21.9226701474088 28.793378116645556 28.654115997591497 20.62983573835415 100-101 22.25467280293776 31.452692565395207 26.158838057258183 20.133796574408855 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2436.0 1 2113.5 2 2180.5 3 2716.5 4 3301.5 5 4545.5 6 6052.5 7 9119.5 8 11983.0 9 12983.5 10 12643.5 11 11611.0 12 12404.5 13 15492.0 14 22482.0 15 31443.0 16 37627.0 17 40062.0 18 40191.5 19 38630.0 20 36214.0 21 34490.0 22 35400.5 23 40632.5 24 50389.0 25 64722.0 26 82543.0 27 102680.5 28 124570.5 29 147401.0 30 170194.0 31 192582.5 32 215286.5 33 238551.0 34 259724.0 35 278770.5 36 299727.0 37 317878.5 38 332139.0 39 343829.0 40 353981.0 41 363580.5 42 368523.5 43 371997.5 44 374796.5 45 374918.5 46 372629.0 47 367858.0 48 358822.5 49 346192.0 50 333249.5 51 317077.0 52 296433.5 53 274645.0 54 253058.5 55 231070.5 56 208522.0 57 185387.0 58 162161.5 59 138012.0 60 113271.0 61 90589.5 62 69976.5 63 52738.5 64 39296.5 65 28999.5 66 21327.5 67 15935.0 68 11949.0 69 8647.5 70 6172.5 71 4289.0 72 2922.0 73 1984.0 74 1305.5 75 840.0 76 545.0 77 318.0 78 209.0 79 144.5 80 85.0 81 53.0 82 35.5 83 24.0 84 17.5 85 12.5 86 9.5 87 6.0 88 3.5 89 4.0 90 4.5 91 3.0 92 1.5 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0038078161397103513 4 0.0 5 0.04732732426900351 6 1.1265728223995123E-5 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 1.182901463519488E-4 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 2.873692751532636E-4 28-29 2.6492583711209644E-4 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 1.4457863655174632E-4 44-45 0.0 46-47 9.809954742625558E-4 48-49 0.001670358732046087 50-51 0.002262220617246 52-53 0.005366663297227448 54-55 0.007009424924765102 56-57 0.005699819724932546 58-59 0.007801497998014176 60-61 0.007373267574709926 62-63 0.005966211500397271 64-65 0.005937938345303691 66-67 0.0013251740474128344 68-69 0.00223507129972962 70-71 4.3708403499783294E-4 72-73 0.001874650611181506 74-75 0.00222465465671583 76-77 6.272459531741749E-4 78-79 0.0 80-81 2.1550195827302926E-4 82-83 0.0 84-85 0.0 86-87 7.629904146901458E-5 88-89 0.0 90-91 0.0 92-93 0.0 94-95 8.195030707432762E-4 96-97 5.879424036922783E-5 98-99 4.8650285254106144E-4 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 86.0 20-21 383.0 22-23 759.0 24-25 1212.0 26-27 2493.0 28-29 5580.0 30-31 14742.0 32-33 19675.0 34-35 27905.0 36-37 43834.0 38-39 49122.0 40-41 50952.0 42-43 59335.0 44-45 70369.0 46-47 71723.0 48-49 66513.0 50-51 59193.0 52-53 51674.0 54-55 55702.0 56-57 56888.0 58-59 34709.0 60-61 64510.0 62-63 62017.0 64-65 66315.0 66-67 70757.0 68-69 72236.0 70-71 72805.0 72-73 66717.0 74-75 67793.0 76-77 71930.0 78-79 75137.0 80-81 75055.0 82-83 71060.0 84-85 70801.0 86-87 73377.0 88-89 77962.0 90-91 80698.0 92-93 79592.0 94-95 85378.0 96-97 137373.0 98-99 770992.0 100-101 5921125.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.35080346386368 #Duplication Level Percentage of deduplicated Percentage of total 1 90.11491566048484 77.81495371361177 2 7.117775560496074 12.292512770485773 3 1.6350657142294789 4.235677144197949 4 0.5375409922436156 1.8566838629999491 5 0.23683879846889425 1.0225610269602552 6 0.12954342305980115 0.6711707198803821 7 0.07666259003575253 0.46339133716456155 8 0.043514874315345876 0.3006035487807329 9 0.02887469883915171 0.22440181000840578 >10 0.07829536853431807 1.0154863439317352 >50 6.131847855506246E-4 0.03828524434274277 >100 3.203830158852021E-4 0.04600211394782661 >500 3.8751491315036095E-5 0.01827036368797149 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.1265728223995123E-5 0.0 2 0.0 1.1265728223995123E-5 0.0 2.2531456447990246E-5 0.0 3 0.0 1.1265728223995123E-5 0.0 3.379718467198537E-5 0.0 4 0.0 4.506291289598049E-5 0.0 4.506291289598049E-5 0.0 5 0.0 4.506291289598049E-5 0.0 4.506291289598049E-5 0.0 6 0.0 4.506291289598049E-5 0.0 4.506291289598049E-5 1.1265728223995123E-5 7 0.0 4.506291289598049E-5 0.0 4.506291289598049E-5 2.2531456447990246E-5 8 0.0 6.759436934397074E-5 0.0 4.506291289598049E-5 2.2531456447990246E-5 9 0.0 1.915173798079171E-4 0.0 6.759436934397074E-5 4.506291289598049E-5 10-11 1.1265728223995123E-5 1.915173798079171E-4 0.0 1.013915540159561E-4 4.506291289598049E-5 12-13 1.1265728223995123E-5 1.915173798079171E-4 0.0 1.1829014635194878E-4 5.632864111997561E-5 14-15 1.1265728223995123E-5 2.478460209278927E-4 0.0 1.5208733102393414E-4 6.196150523197317E-5 16-17 1.1265728223995123E-5 2.478460209278927E-4 0.0 1.6898592335992684E-4 7.32272334559683E-5 18-19 1.6898592335992684E-5 2.6474461326388534E-4 0.0 2.0841597214390974E-4 7.886009756796586E-5 20-21 2.8164320559987805E-5 2.8164320559987804E-4 0.0 2.2531456447990244E-4 9.575868990395855E-5 22-23 3.379718467198537E-5 3.267061184958586E-4 0.0 2.703774773758829E-4 1.4082160279993905E-4 24-25 3.379718467198537E-5 3.492375749438488E-4 0.0 3.041746620478683E-4 1.6898592335992684E-4 26-27 4.506291289598049E-5 3.492375749438488E-4 0.0 3.943004878398293E-4 1.6898592335992684E-4 28-29 4.506291289598049E-5 3.5487043905584634E-4 0.0 8.449296167996342E-4 1.746187874719244E-4 30-31 4.506291289598049E-5 3.830347596158342E-4 0.0 0.0020334639444311194 1.8025165158392197E-4 32-33 5.632864111997561E-5 3.943004878398293E-4 0.0 0.0049456546903338585 1.8025165158392197E-4 34-35 5.632864111997561E-5 4.506291289598049E-4 0.0 0.008584484906684283 1.8025165158392197E-4 36-37 5.632864111997561E-5 5.069577700797805E-4 0.0 0.014684876739977641 1.8025165158392197E-4 38-39 5.632864111997561E-5 5.182234983037756E-4 0.0 0.02720110079683622 1.915173798079171E-4 40-41 7.32272334559683E-5 5.632864111997561E-4 0.0 0.0660340659849474 1.915173798079171E-4 42-43 7.886009756796586E-5 5.689192753117536E-4 0.0 0.07782365057135832 1.915173798079171E-4 44-45 7.886009756796586E-5 6.308807805437269E-4 0.0 0.09495882320005489 1.915173798079171E-4 46-47 9.012582579196098E-5 6.872094216637025E-4 0.0 0.1143302428812145 1.9715024391991464E-4 48-49 9.012582579196098E-5 6.872094216637025E-4 0.0 0.1327666071197825 2.027831080319122E-4 50-51 9.012582579196098E-5 7.773352474556635E-4 0.0 0.15110157980433458 2.027831080319122E-4 52-53 9.012582579196098E-5 7.886009756796586E-4 0.0 0.182476632908161 2.2531456447990244E-4 54-55 9.012582579196098E-5 7.942338397916561E-4 0.0 0.2611790102809909 2.478460209278927E-4 56-57 9.012582579196098E-5 8.111324321276488E-4 0.0 0.3489390331459129 2.5347888503989024E-4 58-59 9.575868990395855E-5 8.22398160351644E-4 0.0 0.43451350473537986 2.591117491518878E-4 60-61 1.013915540159561E-4 8.505624809116317E-4 0.0 0.7907921598192256 2.591117491518878E-4 62-63 1.013915540159561E-4 8.787268014716196E-4 0.0 0.7983064005446303 2.591117491518878E-4 64-65 1.013915540159561E-4 9.801183554875757E-4 0.0 0.8056685539390112 2.591117491518878E-4 66-67 1.013915540159561E-4 0.0010026498119355659 0.0 0.8119154002392164 2.591117491518878E-4 68-69 1.0702441812795366E-4 0.0010082826760475635 0.0 0.817615858720558 2.591117491518878E-4 70-71 1.1265728223995122E-4 0.001025181268383556 0.0 0.8231416984144276 2.6474461326388534E-4 72-73 1.1265728223995122E-4 0.0010420798607195488 0.0 0.8270565389722659 3.1544039027186344E-4 74-75 1.1265728223995122E-4 0.001053345588943544 0.0 0.8301039184568566 3.1544039027186344E-4 76-77 1.1265728223995122E-4 0.0010871427736155294 0.0 0.8330330077950954 3.1544039027186344E-4 78-79 1.1829014635194878E-4 0.001104041365951522 0.0 0.8358550727152061 3.1544039027186344E-4 80-81 1.2392301046394635E-4 0.001104041365951522 0.0 0.8369591140811576 3.267061184958586E-4 82-83 1.2392301046394635E-4 0.001104041365951522 0.0 0.8374041103460055 3.5487043905584634E-4 84-85 1.2392301046394635E-4 0.001115307094175517 0.0 0.8378491066108533 3.6050330316784394E-4 86-87 1.2392301046394635E-4 0.001115307094175517 0.0 0.8380518897188851 3.6050330316784394E-4 88-89 1.2392301046394635E-4 0.0011603700070714977 0.0 0.8381363826805651 3.6050330316784394E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12655 0.0 52.1022 1 GTATCAA 21435 0.0 32.643894 1 GTGGTAT 5975 0.0 26.589098 1 ATCAACG 26730 0.0 26.14492 3 TCAACGC 26845 0.0 26.01426 4 CAACGCA 27570 0.0 25.424625 5 TGGTATC 5980 0.0 25.18771 2 TATCAAC 28345 0.0 24.808413 2 AACGCAG 28580 0.0 24.574833 6 ACGCAGA 32630 0.0 21.431566 7 CGCAGAG 33050 0.0 21.159212 8 GACCGAG 9380 0.0 19.043564 90-91 ACGAGAC 9340 0.0 19.00677 86-87 GAGACCG 9415 0.0 18.924543 88-89 GAGTACT 23685 0.0 18.87472 12-13 AGACCGA 9075 0.0 18.810156 90-91 CGAGACC 9150 0.0 18.526468 88-89 GCCCACG 9445 0.0 18.488804 82-83 ACCGAGG 9565 0.0 18.39452 92-93 GCAGAGT 38475 0.0 18.299778 9 >>END_MODULE