##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140382_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8837722 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.073680525366154 28.0 18.0 32.0 18.0 33.0 2 27.63963847244799 29.0 25.0 32.0 18.0 33.0 3 29.593472277132047 31.0 28.0 33.0 25.0 33.0 4 29.135711555534332 31.0 29.0 33.0 15.0 33.0 5 31.024875075273922 33.0 32.0 33.0 27.0 33.0 6 33.89573433063407 37.0 33.0 38.0 26.0 38.0 7 35.47748820340807 38.0 36.0 38.0 30.0 38.0 8 35.94651811858304 38.0 36.0 38.0 31.0 38.0 9 36.20975857805892 38.0 37.0 38.0 33.0 38.0 10-11 36.34713651323271 38.0 37.0 38.0 33.0 38.0 12-13 36.40377735348544 38.0 37.0 38.0 33.0 38.0 14-15 36.42174425717396 38.0 37.0 38.0 33.5 38.0 16-17 36.462243041815526 38.0 38.0 38.0 34.0 38.0 18-19 36.418004718863074 38.0 38.0 38.0 33.5 38.0 20-21 36.45399262969716 38.0 38.0 38.0 33.5 38.0 22-23 36.50155982205317 38.0 38.0 38.0 34.0 38.0 24-25 36.50971053868322 38.0 38.0 38.0 34.0 38.0 26-27 36.46207885664191 38.0 38.0 38.0 34.0 38.0 28-29 36.44136757049156 38.0 38.0 38.0 34.0 38.0 30-31 36.428328524072285 38.0 38.0 38.0 34.0 38.0 32-33 36.39829440036638 38.0 38.0 38.0 34.0 38.0 34-35 36.3693255101099 38.0 38.0 38.0 33.0 38.0 36-37 36.33908382794519 38.0 37.5 38.0 33.0 38.0 38-39 36.32511290986279 38.0 38.0 38.0 33.0 38.0 40-41 36.323664037843926 38.0 38.0 38.0 33.0 38.0 42-43 36.287027771216984 38.0 37.0 38.0 33.0 38.0 44-45 36.22387282163654 38.0 37.0 38.0 33.0 38.0 46-47 36.16969086825835 38.0 37.0 38.0 33.0 38.0 48-49 36.11936919620414 38.0 37.0 38.0 33.0 38.0 50-51 36.09345913216887 38.0 37.0 38.0 33.0 38.0 52-53 36.06015676612923 38.0 37.0 38.0 32.5 38.0 54-55 35.971279541721145 38.0 37.0 38.0 31.0 38.0 56-57 36.00654460797233 38.0 37.0 38.0 31.0 38.0 58-59 35.987540895899 38.0 37.0 38.0 31.0 38.0 60-61 35.986371666347814 38.0 37.0 38.0 31.0 38.0 62-63 35.973169303120606 38.0 37.0 38.0 31.0 38.0 64-65 35.97962003179225 38.0 37.0 38.0 31.0 38.0 66-67 35.973426392673204 38.0 37.0 38.0 31.0 38.0 68-69 35.950551593014765 38.0 37.0 38.0 31.0 38.0 70-71 35.92792596707076 38.0 37.0 38.0 31.0 38.0 72-73 35.91553289655555 38.0 37.0 38.0 31.0 38.0 74-75 35.900943722835315 38.0 37.0 38.0 31.0 38.0 76-77 35.900872064545126 38.0 37.0 38.0 31.0 38.0 78-79 35.861427498394924 38.0 37.0 38.0 31.0 38.0 80-81 35.837377594508325 38.0 37.0 38.0 31.0 38.0 82-83 35.73656155039894 38.0 37.0 38.0 30.0 38.0 84-85 35.76119116854079 38.0 37.0 38.0 30.5 38.0 86-87 35.77650939387431 38.0 37.0 38.0 31.0 38.0 88-89 35.785954514484004 38.0 37.0 38.0 31.0 38.0 90-91 35.77178431488825 38.0 37.0 38.0 31.0 38.0 92-93 35.74353046298235 38.0 37.0 38.0 31.0 38.0 94-95 35.74869850468276 38.0 37.0 38.0 31.0 38.0 96-97 35.71876756945356 38.0 36.0 38.0 31.0 38.0 98-99 35.72291869054452 38.0 36.0 38.0 31.0 38.0 100-101 35.20721583338385 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 38.0 19 122.0 20 259.0 21 757.0 22 2969.0 23 8475.0 24 19209.0 25 35748.0 26 58614.0 27 86989.0 28 122251.0 29 162127.0 30 205231.0 31 256432.0 32 322442.0 33 414218.0 34 564493.0 35 872472.0 36 1836722.0 37 3868152.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.60227782679745 23.716484858881056 13.859974323700158 23.82126299062134 2 13.723785382703824 24.38188257109694 38.22563099405028 23.668701052148958 3 19.282380244890753 27.138799716206446 29.781666800567137 23.797153238335667 4 13.994126540753374 18.530329421993585 37.72239045310545 29.75315358414759 5 13.888009002389845 39.673640726304484 32.9892643784083 13.449085892897372 6 29.74477243624233 38.36073802284548 18.25984323334036 13.634646307571826 7 26.343824800101203 33.51613685064997 22.392455883993637 17.74758246525519 8 25.160488189151003 36.28561749283356 20.68355397465546 17.870340343359974 9 26.01689666183209 16.760314479228924 20.824653683381307 36.398135175557684 10-11 24.5571822693676 27.14921333800724 28.029417535423722 20.264186857201437 12-13 25.412749202382084 24.52443766190188 28.497854339492367 21.564958796223664 14-15 22.62755606026078 25.63766997875697 26.434006410249154 25.300767550733095 16-17 21.794031790027923 28.75260594983417 27.02426765942778 22.42909460071013 18-19 21.915930372102675 27.76045682360228 29.09019428309693 21.23341852119811 20-21 23.036818767594706 26.731917545748917 28.82543212578264 21.405831560873732 22-23 22.59066963506732 26.699848434132445 28.85532803701493 21.854153893785302 24-25 22.240624150347443 26.96592166489887 28.90525565895127 21.88819852580242 26-27 22.13245465919666 27.07587953246743 28.89451450812894 21.897151300206975 28-29 22.085263098241274 26.98151167885315 29.04888583021375 21.884339392691825 30-31 22.331835642768784 26.838286252129944 28.86529681529673 21.964581289804542 32-33 22.08227849538293 27.154531583834924 28.79591808932614 21.967271831456006 34-35 22.257322599668377 27.085571710110944 28.845161994288038 21.81194369593264 36-37 22.21696327851227 26.852925743124995 28.985674762909447 21.94443621545329 38-39 22.07470652972965 27.03887514846683 28.999862038067743 21.886556283735782 40-41 22.28155767892219 26.864145289669622 28.93258575723394 21.92171127417425 42-43 22.346363182701527 26.85460369408365 28.719140756274903 22.07989236693992 44-45 22.15037835695345 27.096202969582723 28.5181982620064 22.235220411457426 46-47 22.377708813752914 26.868890968158944 28.23920402531629 22.514196192771855 48-49 22.198111863724982 27.087922565795818 28.298990891987035 22.414974678492165 50-51 22.097652435003813 27.209162011226574 28.231861701416033 22.461323852353583 52-53 22.262226274873704 27.185260994465267 27.963573458538484 22.58893927212255 54-55 22.288923045265907 26.916326197994593 28.063779341684715 22.73097141505479 56-57 22.312004659236223 26.84696652030884 28.240497891226557 22.60053092922838 58-59 22.052173243280972 26.885419123770642 28.44864271581998 22.6137649171284 60-61 22.221346725615877 26.71582989033902 28.525278255077612 22.537545128967487 62-63 21.91889331246084 27.29143734330648 28.45974461309503 22.329924731137655 64-65 21.49544360477439 27.503744467650655 28.33195967170765 22.668852255867304 66-67 21.67649967302419 27.949501042279895 27.7966956467797 22.57730363791622 68-69 21.758572925276535 28.026459766365335 27.519686782650115 22.69528052570802 70-71 21.732618729389586 27.552701471939496 27.662040022068723 23.052639776602195 72-73 21.777351246620118 27.172853305682466 27.54124415366413 23.508551294033285 74-75 21.924869269977517 27.048300259961565 27.68215275376545 23.34467771629547 76-77 22.358037301832915 26.886591115955056 27.516947320491703 23.238424261720326 78-79 22.550847559539914 26.82299738910669 26.83637024124428 23.78978481010911 80-81 22.558395300225264 27.142750768714496 26.736930093295246 23.56192383776499 82-83 22.50815230309781 27.18565790919109 26.880354460339156 23.425835327371942 84-85 22.577269812945193 27.196095044093365 26.777511145537446 23.449123997423996 86-87 22.655852528497135 27.662217213645718 26.682850857981492 22.999079399875654 88-89 22.894971398523698 27.36010168551418 26.984144693685696 22.76078222227643 90-91 22.707628723528767 27.29694001266904 27.314962502351865 22.680468761450328 92-93 22.579223770844596 26.909520683459494 27.062364131071476 23.448891414624434 94-95 22.332766156399178 26.976133914637558 27.642724408025405 23.04837552093786 96-97 21.993571468651112 27.199958029429162 27.826276860855227 22.9801936410645 98-99 22.2760404175226 27.420719352833622 28.070504732409447 22.232735497234334 100-101 23.154182287866206 30.144332095619113 25.410610108724065 21.290875507790616 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1897.0 1 1844.0 2 2473.0 3 3549.5 4 4430.0 5 5945.0 6 7960.0 7 11927.0 8 15122.5 9 15528.0 10 15001.0 11 14197.5 12 15133.0 13 19192.5 14 28872.0 15 40481.5 16 46816.0 17 46842.0 18 42837.5 19 36854.5 20 30932.0 21 26338.5 22 24468.5 23 26729.0 24 32758.5 25 43062.0 26 58089.0 27 74738.5 28 90258.5 29 106863.0 30 122020.5 31 137811.5 32 159280.5 33 183060.5 34 204785.0 35 225868.5 36 251743.0 37 274927.5 38 287635.0 39 295138.0 40 307101.5 41 318604.5 42 325790.5 43 335340.0 44 346425.5 45 360305.0 46 366996.5 47 365376.0 48 366061.5 49 362863.0 50 354514.0 51 346982.0 52 336268.5 53 323450.0 54 310790.0 55 292957.0 56 272283.5 57 246342.5 58 219756.0 59 193329.5 60 161009.0 61 127852.0 62 96335.5 63 70416.5 64 51216.0 65 36424.5 66 25344.0 67 17518.5 68 12170.0 69 8262.0 70 5265.5 71 3169.0 72 1868.0 73 1086.0 74 687.5 75 446.5 76 291.5 77 191.5 78 127.5 79 83.5 80 54.5 81 40.0 82 32.5 83 23.5 84 13.5 85 9.5 86 8.5 87 8.5 88 8.0 89 6.5 90 4.5 91 2.5 92 2.0 93 1.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.003530321501400474 4 0.0 5 0.05105388017409917 6 1.1315133017309213E-5 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 5.6575665086546064E-6 14-15 0.0 16-17 1.5275429573367435E-4 18-19 0.0 20-21 1.1315376283786017E-5 22-23 0.0 24-25 0.0 26-27 3.0560254351865107E-4 28-29 2.151334005417625E-4 30-31 5.666630645784528E-6 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 9.265922894896694E-5 44-45 0.0 46-47 9.878787280073497E-4 48-49 0.0016004817094282776 50-51 0.0024785662252887696 52-53 0.005602642237304986 54-55 0.007271189779375277 56-57 0.005946967719931374 58-59 0.007870136490309022 60-61 0.006980022836800732 62-63 0.005742830571836879 64-65 0.0061159220577568785 66-67 0.0014239016502462947 68-69 0.0018449373324820352 70-71 3.160611798361564E-4 72-73 0.0021074912500795096 74-75 0.002352392221766782 76-77 7.936801720022033E-4 78-79 0.0 80-81 2.1920047357930196E-4 82-83 0.0 84-85 6.783959517671332E-6 86-87 8.911236747362942E-5 88-89 0.0 90-91 0.0 92-93 0.0 94-95 6.183947263872985E-4 96-97 5.107681602889722E-5 98-99 4.6848586275903114E-4 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 113.0 20-21 381.0 22-23 677.0 24-25 1103.0 26-27 2439.0 28-29 6028.0 30-31 14226.0 32-33 18246.0 34-35 25407.0 36-37 39717.0 38-39 31191.0 40-41 50962.0 42-43 57573.0 44-45 68749.0 46-47 69383.0 48-49 64795.0 50-51 58696.0 52-53 6203.0 54-55 5357.0 56-57 5227.0 58-59 5681.0 60-61 69767.0 62-63 67497.0 64-65 73263.0 66-67 80515.0 68-69 80638.0 70-71 86717.0 72-73 71572.0 74-75 71340.0 76-77 75636.0 78-79 80529.0 80-81 82235.0 82-83 76792.0 84-85 75706.0 86-87 77768.0 88-89 83793.0 90-91 87910.0 92-93 87799.0 94-95 94710.0 96-97 148557.0 98-99 840278.0 100-101 5892546.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.23737537041984 #Duplication Level Percentage of deduplicated Percentage of total 1 87.42415145003291 71.02108607786757 2 8.481117986232443 13.779675308167686 3 2.1999839544770974 5.361627669562698 4 0.8564540364586315 2.7830431218920437 5 0.392547272256796 1.5944755053479864 6 0.22393219605644638 1.091499832113599 7 0.11341762223410286 0.6449624965736602 8 0.07986275665749 0.5190272592560808 9 0.05207268752874098 0.380722361698702 >10 0.1691956477793665 2.1246077552461986 >50 0.005042624428728317 0.2800926533374765 >100 0.002042161369604796 0.27135651863122073 >500 1.2828904148551648E-4 0.0636567379214685 >1k 5.1315446180011875E-5 0.08416670238361301 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 6.789079810385526E-5 0.0 3.394539905192763E-5 0.0 3 0.0 6.789079810385526E-5 0.0 4.5260532069236845E-5 0.0 4 0.0 1.8104212827694738E-4 0.0 7.920593112116448E-5 0.0 5 0.0 1.8104212827694738E-4 0.0 9.052106413847369E-5 0.0 6 0.0 1.8104212827694738E-4 0.0 1.018361971557829E-4 0.0 7 0.0 1.8104212827694738E-4 0.0 1.018361971557829E-4 0.0 8 0.0 2.1498752732887502E-4 0.0 1.018361971557829E-4 1.1315133017309211E-5 9 0.0 4.186599216404408E-4 0.0 2.4893292638080263E-4 1.1315133017309211E-5 10-11 0.0 4.186599216404408E-4 0.0 3.111661579760033E-4 1.1315133017309211E-5 12-13 0.0 4.186599216404408E-4 0.0 3.6774182306254936E-4 1.1315133017309211E-5 14-15 0.0 5.940444834087336E-4 0.0 3.847145225885132E-4 2.8287832543273025E-5 16-17 0.0 6.110171829346974E-4 0.0 4.130023551317862E-4 3.394539905192763E-5 18-19 0.0 6.675928480212435E-4 0.0 4.639204537096777E-4 3.960296556058224E-5 20-21 0.0 7.354836461250987E-4 0.0 4.808931532356415E-4 4.5260532069236845E-5 22-23 0.0 8.599501093155001E-4 0.0 5.148385522875691E-4 4.5260532069236845E-5 24-25 0.0 9.278409074193553E-4 0.0 6.053596164260428E-4 4.5260532069236845E-5 26-27 0.0 9.731014394885922E-4 0.0 7.920593112116448E-4 4.5260532069236845E-5 28-29 0.0 9.731014394885922E-4 0.0 0.0015558307898800167 4.5260532069236845E-5 30-31 0.0 9.957317055232105E-4 0.0 0.0038697754919197504 4.5260532069236845E-5 32-33 1.1315133017309211E-5 0.0010127044050491744 0.0 0.008559898127594417 4.5260532069236845E-5 34-35 1.1315133017309211E-5 0.001148486001256885 0.0 0.014839796952201032 6.789079810385526E-5 36-37 1.1315133017309211E-5 0.0012672948979386316 0.0 0.024135178725920546 6.789079810385526E-5 38-39 1.1315133017309211E-5 0.0013012402969905593 0.0 0.05433526874911883 6.789079810385526E-5 40-41 1.1315133017309211E-5 0.0014709672922501975 0.0 0.3201673462912728 6.789079810385526E-5 42-43 1.1315133017309211E-5 0.0015275429573367435 0.0 0.3498582553286922 7.354836461250987E-5 44-45 1.1315133017309211E-5 0.0017425304846656186 0.0 0.4003350637189086 7.920593112116448E-5 46-47 1.6972699525963816E-5 0.001923572612942566 0.0 0.4562148481248901 7.920593112116448E-5 48-49 2.2630266034618422E-5 0.0019348877459598752 0.0 0.5137805873504507 9.052106413847369E-5 50-51 2.2630266034618422E-5 0.0022177660713926057 0.0 0.5731228024597289 9.052106413847369E-5 52-53 2.2630266034618422E-5 0.002251711470444533 0.0 0.7646087985116528 1.018361971557829E-4 54-55 2.2630266034618422E-5 0.0022573690369531874 0.0 1.3857247376642987 1.1315133017309212E-4 56-57 2.2630266034618422E-5 0.002308287135531079 0.0 2.0606837372798106 1.1315133017309212E-4 58-59 2.2630266034618422E-5 0.002325259835057043 0.0 2.7767449575806977 1.2446646319040131E-4 60-61 2.2630266034618422E-5 0.0023648628006176253 0.0 3.328963051790948 1.3578159620771053E-4 62-63 2.2630266034618422E-5 0.002427096032212826 0.0 3.340572378266707 1.3578159620771053E-4 64-65 2.2630266034618422E-5 0.0026816865251022832 0.0 3.347949844993993 1.3578159620771053E-4 66-67 2.2630266034618422E-5 0.002709974357645556 0.0 3.354597485641662 1.3578159620771053E-4 68-69 2.2630266034618422E-5 0.0027665500227321022 0.0 3.360362545913981 1.4143916271636513E-4 70-71 2.2630266034618422E-5 0.002811810554801339 0.0 3.3656184252005215 1.4709672922501974E-4 72-73 2.2630266034618422E-5 0.002828783254327303 0.0 3.3698219971164516 2.1498752732887502E-4 74-75 2.2630266034618422E-5 0.0028910164859225033 0.0 3.3733919215834125 2.1498752732887502E-4 76-77 2.2630266034618422E-5 0.0030607434811821418 0.0 3.3764752953306294 2.1498752732887502E-4 78-79 2.2630266034618422E-5 0.0031456069788119607 0.0 3.3795812993438807 2.1498752732887502E-4 80-81 2.2630266034618422E-5 0.0031456069788119607 0.0 3.381086212035183 2.2064509383752962E-4 82-83 2.2630266034618422E-5 0.0031512645453206155 0.0 3.381872613779886 2.2630266034618423E-4 84-85 2.2630266034618422E-5 0.0031795523778638886 0.0 3.382461000696786 2.2630266034618423E-4 86-87 2.2630266034618422E-5 0.0032927037080369807 0.0 3.382647700391572 2.3196022685483884E-4 88-89 2.2630266034618422E-5 0.0034511155702793097 0.0 3.3827608517217445 2.5459049288945724E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12390 0.0 53.817345 1 GTATCAA 23965 0.0 40.95821 1 TCAACGC 33990 0.0 29.792568 4 ATCAACG 34185 0.0 29.675093 3 TATCAAC 34020 0.0 29.329338 2 CAACGCA 34905 0.0 29.036701 5 AACGCAG 36345 0.0 27.88459 6 GTGGTAT 5725 0.0 26.954514 1 TGGTATC 5785 0.0 25.99292 2 TATCTCG 13065 0.0 23.791056 94-95 ACGCAGA 43735 0.0 23.172869 7 CGCAGAG 44725 0.0 22.650133 8 GCAGAGT 50720 0.0 19.990213 9 AGAGTAC 46275 0.0 19.287697 10-11 TACATGG 42000 0.0 18.631733 2 GTACATG 41965 0.0 18.615932 1 ACATGGG 42470 0.0 18.23974 3 AGTACTT 26965 0.0 18.142372 12-13 CTATCTC 18230 0.0 17.467665 94-95 GAGTACT 24910 0.0 17.211664 12-13 >>END_MODULE