##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140380_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10659010 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.79922750799558 32.0 18.0 33.0 18.0 33.0 2 29.867608436430775 31.0 29.0 33.0 25.0 33.0 3 31.09361826285931 33.0 31.0 33.0 27.0 33.0 4 30.945171362068336 33.0 31.0 33.0 27.0 34.0 5 31.354545684824387 33.0 32.0 33.0 28.0 34.0 6 34.204232757075935 37.0 34.0 38.0 26.0 38.0 7 35.60886874109322 38.0 36.0 38.0 30.0 38.0 8 35.412131239205145 38.0 35.0 38.0 29.0 38.0 9 36.08398547332257 38.0 37.0 38.0 33.0 38.0 10-11 36.302657188613196 38.0 37.0 38.0 33.0 38.0 12-13 36.39361718395986 38.0 37.0 38.0 33.0 38.0 14-15 36.38370904052065 38.0 37.0 38.0 33.0 38.0 16-17 36.41328228418962 38.0 37.0 38.0 33.5 38.0 18-19 36.37353666053414 38.0 37.0 38.0 33.5 38.0 20-21 36.42343402255425 38.0 37.0 38.0 33.5 38.0 22-23 36.47037001068652 38.0 38.0 38.0 34.0 38.0 24-25 36.47822028137373 38.0 38.0 38.0 34.0 38.0 26-27 36.43231436544624 38.0 38.0 38.0 34.0 38.0 28-29 36.412755106593174 38.0 38.0 38.0 34.0 38.0 30-31 36.40354064837977 38.0 38.0 38.0 34.0 38.0 32-33 36.38015711792898 38.0 38.0 38.0 33.0 38.0 34-35 36.353412916801744 38.0 38.0 38.0 33.0 38.0 36-37 36.31897218402875 38.0 37.0 38.0 33.0 38.0 38-39 36.30654742043727 38.0 37.0 38.0 33.0 38.0 40-41 36.30352713888061 38.0 37.0 38.0 33.0 38.0 42-43 36.2709230935082 38.0 37.0 38.0 33.0 38.0 44-45 36.21488367949013 38.0 37.0 38.0 33.0 38.0 46-47 36.166746774701885 38.0 37.0 38.0 33.0 38.0 48-49 36.11986084501566 38.0 37.0 38.0 33.0 38.0 50-51 36.09489641190943 38.0 37.0 38.0 33.0 38.0 52-53 36.07042017637751 38.0 37.0 38.0 33.0 38.0 54-55 35.98407916153348 38.0 37.0 38.0 31.0 38.0 56-57 36.009307956753204 38.0 37.0 38.0 31.0 38.0 58-59 35.98933964873822 38.0 37.0 38.0 31.0 38.0 60-61 35.98270134978811 38.0 37.0 38.0 31.0 38.0 62-63 35.96740177804724 38.0 37.0 38.0 31.0 38.0 64-65 35.97195942379034 38.0 37.0 38.0 31.0 38.0 66-67 35.96219490352411 38.0 37.0 38.0 31.0 38.0 68-69 35.93854854328579 38.0 37.0 38.0 31.0 38.0 70-71 35.91635968110434 38.0 37.0 38.0 31.0 38.0 72-73 35.90210395698763 38.0 37.0 38.0 31.0 38.0 74-75 35.88573229738629 38.0 37.0 38.0 31.0 38.0 76-77 35.887009440186574 38.0 37.0 38.0 31.0 38.0 78-79 35.84383389098531 38.0 37.0 38.0 31.0 38.0 80-81 35.81857272478065 38.0 37.0 38.0 31.0 38.0 82-83 35.719985662580825 38.0 36.5 38.0 30.0 38.0 84-85 35.741642776886344 38.0 37.0 38.0 30.0 38.0 86-87 35.75160290499738 38.0 37.0 38.0 31.0 38.0 88-89 35.758565292863175 38.0 37.0 38.0 31.0 38.0 90-91 35.742364593631194 38.0 37.0 38.0 31.0 38.0 92-93 35.70953685281371 38.0 36.0 38.0 31.0 38.0 94-95 35.71379121174739 38.0 36.0 38.0 31.0 38.0 96-97 35.68534169722056 38.0 36.0 38.0 31.0 38.0 98-99 35.68615675930215 38.0 36.0 38.0 31.0 38.0 100-101 35.14462345767399 38.0 35.0 38.0 28.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 4.0 18 8.0 19 30.0 20 153.0 21 852.0 22 3637.0 23 11008.0 24 24245.0 25 44917.0 26 71944.0 27 105494.0 28 146855.0 29 191608.0 30 244641.0 31 305178.0 32 382167.0 33 490125.0 34 661745.0 35 990313.0 36 1964460.0 37 5019626.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.298962098731494 18.55806496100482 13.721696480254733 21.42127646000895 2 14.957561724775564 20.298320388103587 42.7964886044764 21.94762928264445 3 18.192978551892473 27.391558560478916 29.85671927117265 24.558743616455956 4 12.58626270169556 19.340792437571594 38.109261554309455 29.963683306423395 5 14.165293040250063 37.82296490609389 34.61011052244611 13.40163153120994 6 29.427911222524415 38.03003280792494 18.922460903967632 13.619595065583015 7 26.625962448670187 33.556699918660364 22.395184918674435 17.422152713995015 8 24.77530277202104 36.42142187689101 20.746551509005055 18.056723842082896 9 26.070338614937032 17.29109926719273 20.914128047539123 35.72443407033111 10-11 24.326766744753968 27.041807822677715 28.28212000926915 20.349305423299164 12-13 25.327511654459467 24.573159233362198 28.536341555172573 21.562987557005762 14-15 22.502408760288244 25.820826699665357 26.511936849669905 25.1648276903765 16-17 21.67641774140829 29.09358911477216 27.0672491105166 22.16274403330295 18-19 21.69835191073092 28.019112469169276 29.097317668338807 21.185217951760997 20-21 22.8419001817647 26.94193547055165 29.002475000960693 21.21368934672296 22-23 22.502931794402727 26.91519847756482 28.918435266819692 21.66343446121276 24-25 22.084830261691344 27.127278159054967 29.029261861890255 21.758629717363434 26-27 21.978360939137005 27.260086263988693 29.00006799243143 21.761484804442873 28-29 21.90039389532248 27.212023884208325 29.095482996017264 21.79209922445193 30-31 22.215842113806673 27.035611444281198 28.971555573779955 21.776990868132174 32-33 21.945010480699025 27.345782990649802 28.8558185543701 21.853387974281073 34-35 22.158810441831683 27.280180362893645 28.865899758023062 21.69510943725161 36-37 22.047298169661374 27.16912419073063 28.99316835369932 21.790409285908673 38-39 21.871525484964017 27.303185289765867 29.03742811126671 21.7878611140034 40-41 22.213091293978465 27.090555409279283 28.915045685540917 21.78130761120133 42-43 22.226217066184674 27.13481436411447 28.714011713535502 21.924956856165355 44-45 22.02203465090534 27.363722941638752 28.573235036759705 22.041007370696203 46-47 22.23191520238012 27.20248495362122 28.22780014583962 22.33779969815904 48-49 22.080896618943278 27.423741677113966 28.310581939499897 22.184779764442858 50-51 21.93529375217757 27.599817574611258 28.243951005329077 22.220937667882097 52-53 22.225692180773816 27.55505043584755 27.789272638080153 22.429984745298484 54-55 22.20956290673035 27.300242480715475 27.883323574695645 22.606871037858532 56-57 22.20565236111129 27.228959930568486 28.026510758264216 22.538876950056004 58-59 21.961648684336517 27.155717786202672 28.35244186170096 22.53019166775985 60-61 22.130781912435253 27.038922557036333 28.3850109941118 22.445284536416622 62-63 21.825767117064466 27.54898001080971 28.362364452097832 22.26288842002799 64-65 21.511387423325335 27.74897954632766 28.170002245691446 22.569630784655562 66-67 21.62152262630515 28.183796853380837 27.721404683285105 22.473275837028904 68-69 21.673700683760032 28.30004778739995 27.509544294762527 22.516707234077494 70-71 21.707273667411283 27.815315962176886 27.546386205480506 22.93102416493133 72-73 21.668813728855277 27.549980544912206 27.470757930261218 23.3104477959713 74-75 21.869726176252595 27.400785856392552 27.535857415982072 23.19363055137278 76-77 22.297454042975378 27.236248186303914 27.369189541546223 23.097108229174484 78-79 22.436435189517205 27.184366866632704 26.775440436459665 23.603757507390426 80-81 22.392996367535147 27.44338655489717 26.734959915771405 23.42865716179628 82-83 22.382750592693927 27.555606807738855 26.852369510363484 23.209273089203737 84-85 22.468892471731827 27.541739075659628 26.760249205033087 23.229119247575458 86-87 22.51782268655785 27.923669058461748 26.726049424246902 22.832458830733508 88-89 22.74310214503282 27.681552895329215 26.944560418046915 22.63078454159104 90-91 22.60400470396541 27.63321736552028 27.196485556321637 22.566292374192678 92-93 22.428433820191096 27.293128956865214 27.03053434402854 23.24790287891515 94-95 22.25295816584223 27.346195486341564 27.50595018276635 22.894896165049854 96-97 21.972621336687094 27.543887941442364 27.72676395618031 22.756726765690225 98-99 22.257155802503288 27.793040168407053 27.924895840576507 22.024908188513155 100-101 23.035270754083687 30.566310975609756 25.310611993734618 21.08780627657194 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2500.0 1 2066.5 2 1975.5 3 2797.0 4 4055.5 5 6237.5 6 8092.5 7 8674.0 8 8463.5 9 8114.5 10 8009.5 11 8653.5 12 10741.5 13 16702.5 14 26912.5 15 39491.0 16 50958.0 17 57493.5 18 59599.5 19 54908.0 20 47558.5 21 41913.5 22 38776.5 23 40774.0 24 47173.0 25 59075.5 26 76920.0 27 96895.0 28 117438.5 29 138875.5 30 158685.0 31 179669.5 32 204992.5 33 233257.0 34 259478.5 35 283258.0 36 311081.5 37 335207.5 38 351407.5 39 364483.0 40 381017.0 41 394956.5 42 402358.0 43 412652.5 44 424690.0 45 438928.5 46 445900.5 47 444645.5 48 443073.0 49 437733.5 50 427230.5 51 413960.5 52 397117.0 53 376454.0 54 355597.5 55 332506.5 56 305598.5 57 275292.0 58 244725.5 59 212881.0 60 176980.5 61 141362.0 62 107720.5 63 79871.5 64 58769.5 65 42481.5 66 30780.0 67 22891.0 68 17096.5 69 11976.0 70 8129.0 71 5326.0 72 3403.5 73 2113.5 74 1290.5 75 777.0 76 493.0 77 301.5 78 193.0 79 130.5 80 84.5 81 45.0 82 30.0 83 26.5 84 19.5 85 13.0 86 8.5 87 8.0 88 6.0 89 3.0 90 2.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.003321133951464536 4 0.0 5 0.050070316098774645 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 1.3134428056639405E-4 18-19 0.0 20-21 0.0 22-23 4.693311346108339E-6 24-25 0.0 26-27 2.4886670563074067E-4 28-29 1.8791335653374272E-4 30-31 9.404794093789309E-6 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 8.64268379531359E-5 44-45 0.0 46-47 9.840107508533005E-4 48-49 0.0016394066231536733 50-51 0.0023131328463331974 52-53 0.005742534630272909 54-55 0.00718638625340992 56-57 0.0058989769039845515 58-59 0.007818407775019853 60-61 0.00701213098660683 62-63 0.006259823500193919 64-65 0.006008806482399987 66-67 0.0013216738476758596 68-69 0.001871750160856761 70-71 3.6031235634829376E-4 72-73 0.0018239635814568693 74-75 0.002137196193175103 76-77 6.221949266976602E-4 78-79 0.0 80-81 1.7502924492547828E-4 82-83 0.0 84-85 0.0 86-87 6.760669646582051E-5 88-89 0.0 90-91 0.0 92-93 0.0 94-95 6.015312863498869E-4 96-97 5.979463294137752E-5 98-99 5.134636669088194E-4 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 1269.0 20-21 3745.0 22-23 2330.0 24-25 2587.0 26-27 4148.0 28-29 7944.0 30-31 17266.0 32-33 21977.0 34-35 29886.0 36-37 46118.0 38-39 35197.0 40-41 57947.0 42-43 65613.0 44-45 78411.0 46-47 79333.0 48-49 72462.0 50-51 92008.0 52-53 6422.0 54-55 5781.0 56-57 5764.0 58-59 6469.0 60-61 76910.0 62-63 75829.0 64-65 82085.0 66-67 89299.0 68-69 90542.0 70-71 96408.0 72-73 80644.0 74-75 81311.0 76-77 86945.0 78-79 91381.0 80-81 93792.0 82-83 88076.0 84-85 86175.0 86-87 89943.0 88-89 97471.0 90-91 103598.0 92-93 100697.0 94-95 109923.0 96-97 174260.0 98-99 1012062.0 100-101 7208982.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 80.59166787141012 #Duplication Level Percentage of deduplicated Percentage of total 1 87.03479564825133 70.14279344139922 2 8.578236511718904 13.826687757497075 3 2.3560387042523776 5.696312662358852 4 0.906866582161642 2.9234356157300767 5 0.42938289122650536 1.7302341679696174 6 0.23668604610595453 1.144495393054101 7 0.12857000487497092 0.7253169791776467 8 0.07925145943910908 0.5109605837952969 9 0.0592235229497759 0.42956302425688575 >10 0.18500574066517575 2.2674528357845785 >50 0.004017351973951906 0.22446239350376526 >100 0.0017939329833656658 0.23994587824653657 >500 8.77356741468117E-5 0.05476305059017492 >1k 4.386772289898791E-5 0.08357621663610865 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 9.381734326171004E-6 0.0 0.0 0.0 3 0.0 9.381734326171004E-6 0.0 1.8763468652342008E-5 0.0 4 0.0 4.690867163085502E-5 0.0 1.8763468652342008E-5 0.0 5 0.0 4.690867163085502E-5 0.0 1.8763468652342008E-5 0.0 6 0.0 4.690867163085502E-5 0.0 1.8763468652342008E-5 2.8145202978513015E-5 7 0.0 4.690867163085502E-5 0.0 1.8763468652342008E-5 2.8145202978513015E-5 8 0.0 5.629040595702603E-5 0.0 2.8145202978513015E-5 3.7526937304684015E-5 9 0.0 1.2196254624022307E-4 0.0 3.7526937304684015E-5 4.690867163085502E-5 10-11 0.0 1.2196254624022307E-4 0.0 7.974474177245355E-5 4.690867163085502E-5 12-13 0.0 1.2196254624022307E-4 0.0 1.1258081191405206E-4 4.690867163085502E-5 14-15 0.0 3.705785058837547E-4 0.0 1.1258081191405206E-4 6.567214028319704E-5 16-17 0.0 3.940328416991822E-4 0.0 1.3134428056639407E-4 6.567214028319704E-5 18-19 0.0 4.315597790038662E-4 0.0 2.157798895019331E-4 9.381734326171004E-5 20-21 0.0 4.784684506347213E-4 0.0 2.4392509248044613E-4 9.381734326171004E-5 22-23 0.0 5.441405909179183E-4 0.0 2.720702954589592E-4 1.0319907758788105E-4 24-25 0.0 5.722857938964313E-4 0.0 3.3305156857907066E-4 1.1258081191405206E-4 26-27 0.0 5.816675282226023E-4 0.0 4.7846845063472123E-4 1.1727167907713756E-4 28-29 0.0 5.816675282226023E-4 0.0 0.001308751938500855 1.2196254624022307E-4 30-31 0.0 6.567214028319703E-4 0.0 0.003982546221459592 1.2665341340330856E-4 32-33 0.0 6.661031371581413E-4 0.0 0.008940792812840968 1.4072601489256508E-4 34-35 0.0 7.786839490721934E-4 0.0 0.015250009147190966 1.4072601489256508E-4 36-37 1.8763468652342008E-5 8.95955628149331E-4 0.0 0.024021930742160857 1.5010774921873606E-4 38-39 1.8763468652342008E-5 9.475551669432715E-4 0.0 0.05142597670890636 1.5479861638182155E-4 40-41 2.345433581542751E-5 0.0010413725102049816 0.0 0.2971758165157927 1.5948948354490707E-4 42-43 2.8145202978513015E-5 0.0010788994475096655 0.0 0.32632955593436913 1.7356208503416356E-4 44-45 2.8145202978513015E-5 0.0011867893922606321 0.0 0.3760105300586077 1.876346865234201E-4 46-47 3.283607014159851E-5 0.0012571523997069146 0.0 0.432042938321664 2.017072880126766E-4 48-49 3.7526937304684015E-5 0.00126184326687 0.0 0.4868885571924597 2.533068268066171E-4 50-51 4.690867163085502E-5 0.001411951016088736 0.0 0.5432211809539536 2.533068268066171E-4 52-53 4.690867163085502E-5 0.0014166418832518217 0.0 0.724621705017633 2.8614289694821565E-4 54-55 5.1599538793940526E-5 0.001430714484741078 0.0 1.3069037368385996 3.2836070141598517E-4 56-57 5.629040595702603E-5 0.0014354053519041636 0.0 1.9482531679771387 3.5650590439449816E-4 58-59 5.629040595702603E-5 0.0014447870862303348 0.0 2.618357614825392 3.846511073730112E-4 60-61 5.629040595702603E-5 0.0014916957578611897 0.0 3.1325094919697047 3.893419745360967E-4 62-63 6.567214028319704E-5 0.001515150093676617 0.0 3.1432750321089857 4.127963103515242E-4 64-65 6.567214028319704E-5 0.0017637660533201488 0.0 3.150513040141627 4.174871775146097E-4 66-67 7.036300744628254E-5 0.0017731477876463198 0.0 3.156747202601367 4.3155977900386617E-4 68-69 7.505387460936803E-5 0.0018247473264402605 0.0 3.1625638778835934 4.4563238049312275E-4 70-71 7.505387460936803E-5 0.0018388199279295169 0.0 3.1678880121136954 5.019227864501487E-4 72-73 7.505387460936803E-5 0.0018482016622556878 0.0 3.1720581930216785 5.253771222655763E-4 74-75 7.505387460936803E-5 0.0018716559980711154 0.0 3.175430926511937 5.347588565917473E-4 76-77 7.505387460936803E-5 0.0019560916070066542 0.0 3.17827828287993 5.394497237548328E-4 78-79 7.505387460936803E-5 0.002007691145800595 0.0 3.1809661497643775 5.441405909179183E-4 80-81 7.505387460936803E-5 0.002007691145800595 0.0 3.18218577522678 5.675949267333457E-4 82-83 7.505387460936803E-5 0.0020217637472898517 0.0 3.182659552810252 6.004309968749442E-4 84-85 7.505387460936803E-5 0.0020405272159421933 0.0 3.183072349120603 6.051218640380298E-4 86-87 7.505387460936803E-5 0.002092126754736134 0.0 3.183292819877268 6.098127312011153E-4 88-89 7.505387460936803E-5 0.0021671806293455022 0.0 3.1833819463533666 6.191944655272863E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 17375 0.0 57.583755 1 GTATCAA 32630 0.0 39.878757 1 TCAACGC 39355 0.0 32.549435 4 ATCAACG 39385 0.0 32.504025 3 TATCAAC 40230 0.0 31.984995 2 CAACGCA 40405 0.0 31.71444 5 AACGCAG 41465 0.0 30.984587 6 TGGTATC 7245 0.0 28.964766 2 GTGGTAT 7830 0.0 28.146374 1 ACGCAGA 47300 0.0 27.088068 7 CGCAGAG 48330 0.0 26.510775 8 TATCTCG 13610 0.0 26.110876 94-95 GCAGAGT 55140 0.0 23.045607 9 GTACATG 46290 0.0 22.325426 1 GAGTACT 27125 0.0 22.089113 12-13 TACATGG 45575 0.0 22.020645 2 ACATGGG 45825 0.0 21.296955 3 CAGAGTA 53510 0.0 20.951363 10-11 GTACTTT 29695 0.0 19.76153 14-15 CATGGGG 32005 0.0 19.271545 4 >>END_MODULE