##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140376_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10162741 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.825036670717083 30.0 18.0 32.0 18.0 33.0 2 30.453486515104537 32.0 29.0 33.0 25.0 33.0 3 31.013627721103983 33.0 31.0 33.0 27.0 33.0 4 31.50458542631363 33.0 31.0 33.0 29.0 34.0 5 31.98348555768567 33.0 32.0 34.0 30.0 34.0 6 35.63180415598508 38.0 36.0 38.0 29.0 38.0 7 36.05371493773186 38.0 37.0 38.0 31.0 38.0 8 36.18894892627885 38.0 37.0 38.0 33.0 38.0 9 36.43094003871593 38.0 37.0 38.0 34.0 38.0 10-11 36.47981823998073 38.0 38.0 38.0 34.0 38.0 12-13 36.51407814092674 38.0 38.0 38.0 34.0 38.0 14-15 36.502275419593985 38.0 38.0 38.0 34.0 38.0 16-17 36.512035089745964 38.0 38.0 38.0 34.0 38.0 18-19 36.46072447384027 38.0 38.0 38.0 34.0 38.0 20-21 36.48820231160161 38.0 38.0 38.0 34.0 38.0 22-23 36.527159306006695 38.0 38.0 38.0 34.0 38.0 24-25 36.53208853562374 38.0 38.0 38.0 34.0 38.0 26-27 36.48116445563406 38.0 38.0 38.0 34.0 38.0 28-29 36.46158322470886 38.0 38.0 38.0 34.0 38.0 30-31 36.45219828712417 38.0 38.0 38.0 34.0 38.0 32-33 36.42985656958258 38.0 38.0 38.0 34.0 38.0 34-35 36.40485184448837 38.0 38.0 38.0 34.0 38.0 36-37 36.37055298302394 38.0 38.0 38.0 33.5 38.0 38-39 36.365885103138574 38.0 38.0 38.0 33.0 38.0 40-41 36.348853682895395 38.0 38.0 38.0 33.0 38.0 42-43 36.317157470691335 38.0 38.0 38.0 33.0 38.0 44-45 36.26335809189267 38.0 37.0 38.0 33.0 38.0 46-47 36.22251236312689 38.0 37.0 38.0 33.0 38.0 48-49 36.18076230160453 38.0 37.0 38.0 33.0 38.0 50-51 36.15179363263681 38.0 37.0 38.0 33.0 38.0 52-53 36.116220535738904 38.0 37.0 38.0 33.0 38.0 54-55 36.03197290307736 38.0 37.0 38.0 31.0 38.0 56-57 36.06202733974783 38.0 37.0 38.0 32.5 38.0 58-59 36.046125668526905 38.0 37.0 38.0 32.0 38.0 60-61 36.03954426782407 38.0 37.0 38.0 31.5 38.0 62-63 36.023852673941946 38.0 37.0 38.0 31.0 38.0 64-65 36.025650364983804 38.0 37.0 38.0 31.0 38.0 66-67 36.017018922547706 38.0 37.0 38.0 31.0 38.0 68-69 35.9996184418562 38.0 37.0 38.0 31.0 38.0 70-71 35.97985508129545 38.0 37.0 38.0 31.0 38.0 72-73 35.96626083634027 38.0 37.0 38.0 31.0 38.0 74-75 35.95195726559814 38.0 37.0 38.0 31.0 38.0 76-77 35.95137068270522 38.0 37.0 38.0 31.0 38.0 78-79 35.91265802559557 38.0 37.0 38.0 31.0 38.0 80-81 35.8933295291689 38.0 37.0 38.0 31.0 38.0 82-83 35.79876496431467 38.0 37.0 38.0 30.0 38.0 84-85 35.818046702095245 38.0 37.0 38.0 31.0 38.0 86-87 35.83012760691138 38.0 37.0 38.0 31.0 38.0 88-89 35.83695516183684 38.0 37.0 38.0 31.0 38.0 90-91 35.82073054139414 38.0 37.0 38.0 31.0 38.0 92-93 35.79100689433626 38.0 37.0 38.0 31.0 38.0 94-95 35.79467618629459 38.0 37.0 38.0 31.0 38.0 96-97 35.76998917368083 38.0 37.0 38.0 31.0 38.0 98-99 35.76149469376554 38.0 37.0 38.0 31.0 38.0 100-101 35.195091455815586 38.0 35.5 38.0 28.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 6.0 19 22.0 20 98.0 21 719.0 22 3212.0 23 9342.0 24 21122.0 25 39796.0 26 64112.0 27 95919.0 28 133066.0 29 175391.0 30 222168.0 31 277859.0 32 347708.0 33 444248.0 34 594348.0 35 882651.0 36 1739793.0 37 5111161.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.22087554922437 20.68773572011724 17.03281624514489 23.058572485513505 2 13.905628412649698 22.507805718949246 41.37076798473955 22.2157978836615 3 18.821038780616906 26.088248164616758 31.03122427075946 24.05948878400688 4 12.549124296289751 19.513967737640858 39.13460945231213 28.802298513757265 5 13.23004284409161 37.81352384777746 36.25141763538418 12.705015672746747 6 28.82293271077163 39.370087262875245 18.87784014174916 12.929139884603966 7 25.393031269811956 33.339076534568775 23.590141675361007 17.677750520258265 8 23.41324058145337 37.892739763809786 21.353323871975093 17.340695782761756 9 24.515010271343137 17.656329134039726 22.031005217982038 35.7976553766351 10-11 23.388739317473505 27.735494784330328 29.279502449191614 19.596263449004557 12-13 24.207898243200336 25.13834604266703 29.611105901449225 21.042649812683408 14-15 21.29438800024521 26.711578106733214 27.38491023238711 24.60912366063447 16-17 20.746675388732918 29.845008666224953 28.155974239007346 21.25234170603478 18-19 20.770784181157424 28.87944797569868 30.001153232184112 20.34861461095978 20-21 21.523665906113738 27.96351313952559 30.05928868826145 20.453532266099224 22-23 21.166919666500757 27.924199832671754 29.931676268064493 20.977204232762997 24-25 20.96125829461859 28.036518194267074 30.030016686543785 20.97220682457055 26-27 20.996419353865548 28.171073160843342 29.852245011532506 20.980262473758604 28-29 20.918201251317043 28.220939231624403 29.931458804418366 20.929400712640184 30-31 21.189520535828688 28.050723287249873 29.91041195995581 20.849344216965633 32-33 20.976438643332163 28.19802988091557 29.817270093413136 21.008261382339136 34-35 21.118703085541153 28.24122231738343 29.810105527461612 20.829969069613803 36-37 21.073386883214802 28.143331238647345 29.8271356219054 20.95614625623245 38-39 20.963408478996296 28.226253940312578 29.872598177246807 20.937739403444315 40-41 21.18507179299049 28.106120987671453 29.740454105131164 20.96835311420689 42-43 21.146720450309278 28.174346991963144 29.60657019341127 21.072362364316305 44-45 21.135382259872898 28.26964206214379 29.425521154542235 21.16945452344108 46-47 21.14453187024446 28.240680869462125 29.23561679210626 21.37917046818715 48-49 21.119736592005665 28.390487378733418 29.29818703990572 21.191588989355196 50-51 21.095582010094695 28.50382659611132 29.14419448116844 21.25639691262555 52-53 21.170326197235802 28.435624978357062 28.937384581749846 21.456664242657293 54-55 21.19432024501699 28.23189701971026 29.057555986977885 21.516226748294862 56-57 21.197480449564406 28.096046927773166 29.200354334744897 21.506118287917523 58-59 21.08051426724995 27.96471610492477 29.380043663418835 21.574725964406444 60-61 21.16506322487385 27.777575395079566 29.559560242116127 21.497801137930452 62-63 20.92452936448206 28.22520625126884 29.507235028805017 21.343029355444084 64-65 20.64483937002631 28.357404945826055 29.391564820576495 21.606190863571147 66-67 20.743138072629115 28.757533532155833 29.001548259510145 21.49778013570491 68-69 20.83190532246555 28.91996660684376 28.717825960471167 21.530302110219527 70-71 20.79660013712147 28.6017971830003 28.693733833139586 21.907868846738648 72-73 20.766711438483572 28.332146046922524 28.716793187807827 22.184349326786077 74-75 21.001674181629124 28.1353706372481 28.735437070595715 22.12751811052706 76-77 21.306590931663955 28.03623063763511 28.612857262685687 22.044321168015244 78-79 21.453538602509138 28.013278030642407 28.08996164484211 22.443221722006353 80-81 21.420903100059338 28.265380303623143 28.042021991149426 22.271694605168094 82-83 21.36789567707447 28.376188590932095 28.12757000672833 22.128345725265106 84-85 21.464677134661027 28.387261342205385 28.017894837253493 22.130166685880095 86-87 21.572777685128226 28.6457637740861 27.999089112647173 21.782369428138505 88-89 21.768704275242953 28.434709622614886 28.183548005959324 21.613038096182837 90-91 21.586698193143363 28.458443379331104 28.366984136616928 21.58787429090861 92-93 21.406755577613342 28.121164993436143 28.31673770082272 22.15534172812779 94-95 21.260786608281222 28.209789996427588 28.72461262625668 21.80481076903451 96-97 21.009045912645394 28.40630520356937 28.880333333394148 21.704315550391083 98-99 21.334546665259456 28.599287860216027 29.137840981985175 20.928324492539346 100-101 21.953201227225073 31.385101553029678 26.66372530656315 19.9979719131821 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2141.0 1 1959.0 2 2296.5 3 3033.0 4 3786.5 5 5292.5 6 6926.0 7 9664.0 8 12469.5 9 13700.0 10 13560.5 11 12767.0 12 13608.0 13 17330.5 14 25658.5 15 35911.5 16 42923.5 17 45765.5 18 45787.0 19 43878.5 20 40818.5 21 38287.5 22 39101.0 23 44862.5 24 55602.0 25 71240.5 26 91436.5 27 114640.0 28 139937.5 29 166167.0 30 191619.5 31 217773.0 32 245382.5 33 272887.0 34 298708.5 35 321166.0 36 343305.0 37 363860.5 38 379254.0 39 390894.5 40 402760.0 41 412611.0 42 418023.5 43 421548.0 44 423619.5 45 423034.0 46 418240.0 47 412222.5 48 401453.0 49 384943.0 50 367251.5 51 346117.5 52 320583.0 53 294259.0 54 268913.5 55 242922.0 56 216840.0 57 190479.0 58 164022.0 59 138616.0 60 112260.0 61 87528.0 62 66019.0 63 48253.0 64 35093.5 65 25395.0 66 18287.0 67 13384.5 68 9881.0 69 7021.0 70 4949.5 71 3457.5 72 2326.5 73 1492.0 74 951.5 75 586.0 76 358.0 77 209.5 78 123.5 79 82.5 80 59.5 81 44.5 82 29.0 83 17.0 84 12.5 85 10.5 86 8.5 87 5.5 88 4.0 89 2.5 90 1.5 91 2.5 92 2.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.004152423052009295 4 0.0 5 0.0490123678247827 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 1.1315844809977937E-4 18-19 0.0 20-21 4.920018700007074E-6 22-23 0.0 24-25 0.0 26-27 2.6575364214136214E-4 28-29 1.9199039693571513E-4 30-31 4.926236019711644E-6 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 1.153537032927213E-4 44-45 0.0 46-47 9.092074113915155E-4 48-49 0.001830665955877371 50-51 0.0022587875970436124 52-53 0.005540285889088232 54-55 0.007121478300979738 56-57 0.0056768585165401 58-59 0.008010187176896777 60-61 0.007248926528419553 62-63 0.006263498322098129 64-65 0.006200661614275722 66-67 0.0013934724241344337 68-69 0.0020294833731103173 70-71 3.823274880486312E-4 72-73 0.0017967754665780763 74-75 0.0021443769622143277 76-77 7.279472114741245E-4 78-79 0.0 80-81 1.796384125757667E-4 82-83 0.0 84-85 0.0 86-87 6.343222667356272E-5 88-89 0.0 90-91 0.0 92-93 0.0 94-95 5.885917701657247E-4 96-97 2.4326282096932813E-5 98-99 5.65057556448779E-4 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 102.0 20-21 406.0 22-23 801.0 24-25 1219.0 26-27 2377.0 28-29 5088.0 30-31 13055.0 32-33 17426.0 34-35 24973.0 36-37 38236.0 38-39 28870.0 40-41 47975.0 42-43 54975.0 44-45 66258.0 46-47 67220.0 48-49 61899.0 50-51 55493.0 52-53 6909.0 54-55 5989.0 56-57 5644.0 58-59 5486.0 60-61 65029.0 62-63 63790.0 64-65 68664.0 66-67 74042.0 68-69 75740.0 70-71 76295.0 72-73 70900.0 74-75 72321.0 76-77 77222.0 78-79 80976.0 80-81 82153.0 82-83 77747.0 84-85 77130.0 86-87 80485.0 88-89 85162.0 90-91 88581.0 92-93 88420.0 94-95 95866.0 96-97 161208.0 98-99 950399.0 100-101 7140210.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.56981084958068 #Duplication Level Percentage of deduplicated Percentage of total 1 87.5575578028304 72.29610986230932 2 8.559598094144853 14.135287911639436 3 2.1699879967567024 5.3752649531418415 4 0.8122238924377936 2.6826069266439507 5 0.3626840528312751 1.4973376820218853 6 0.19470909748622173 0.9646256010077934 7 0.11324471740808584 0.6545416427269904 8 0.0658502547339582 0.4349794462223705 9 0.04004902360325798 0.29761562732682634 >10 0.12227047338745965 1.4683725014830917 >50 0.0012774485773108793 0.0676011179365561 >100 4.88430455896576E-4 0.07651373469002812 >500 3.914421933835284E-5 0.02514562610843864 >1k 1.9571127458399134E-5 0.02399736674144281 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 9.839865052154729E-6 0.0 0.0 0.0 2 0.0 1.9679730104309457E-5 0.0 1.9679730104309457E-5 0.0 3 0.0 1.9679730104309457E-5 0.0 1.9679730104309457E-5 0.0 4 0.0 5.9039190312928375E-5 0.0 2.9519595156464188E-5 0.0 5 0.0 5.9039190312928375E-5 0.0 2.9519595156464188E-5 0.0 6 0.0 5.9039190312928375E-5 0.0 2.9519595156464188E-5 9.839865052154729E-6 7 0.0 5.9039190312928375E-5 0.0 2.9519595156464188E-5 9.839865052154729E-6 8 0.0 6.88790553650831E-5 0.0 2.9519595156464188E-5 9.839865052154729E-6 9 1.9679730104309457E-5 8.855878546939256E-5 0.0 2.9519595156464188E-5 9.839865052154729E-6 10-11 1.9679730104309457E-5 8.855878546939256E-5 0.0 5.4119257786851E-5 9.839865052154729E-6 12-13 1.9679730104309457E-5 8.855878546939256E-5 0.0 9.839865052154729E-5 9.839865052154729E-6 14-15 1.9679730104309457E-5 1.1315844809977939E-4 0.0 1.1315844809977939E-4 1.4759797578232092E-5 16-17 1.9679730104309457E-5 1.2791824567801147E-4 0.0 1.229983131519341E-4 1.9679730104309457E-5 18-19 3.9359460208618915E-5 1.3283817820408883E-4 0.0 1.4267804325624356E-4 2.9519595156464188E-5 20-21 5.9039190312928375E-5 1.377581107301662E-4 0.0 1.6235777336055302E-4 3.9359460208618915E-5 22-23 5.9039190312928375E-5 1.7711757093878512E-4 0.0 2.0171723356917194E-4 6.88790553650831E-5 24-25 5.9039190312928375E-5 1.9187736851701721E-4 0.0 2.459966263038682E-4 7.871892041723783E-5 26-27 7.871892041723783E-5 1.9679730104309458E-4 0.0 3.2471554672110605E-4 7.871892041723783E-5 28-29 7.871892041723783E-5 1.9679730104309458E-4 0.0 7.97029069224533E-4 7.871892041723783E-5 30-31 7.871892041723783E-5 2.459966263038682E-4 0.0 0.0026223240363992353 7.871892041723783E-5 32-33 7.871892041723783E-5 2.459966263038682E-4 0.0 0.006499230866948198 7.871892041723783E-5 34-35 7.871892041723783E-5 2.9027601903856446E-4 0.0 0.011940676240789764 7.871892041723783E-5 36-37 9.839865052154729E-5 3.3947534429933817E-4 0.0 0.019704329766939845 7.871892041723783E-5 38-39 1.1315844809977939E-4 3.443952768254155E-4 0.0 0.04394483732292302 7.871892041723783E-5 40-41 1.1807838062585675E-4 3.8375473703403443E-4 0.0 0.2493667800842312 7.871892041723783E-5 42-43 1.1807838062585675E-4 4.280341297687307E-4 0.0 0.2742419589360784 7.871892041723783E-5 44-45 1.1807838062585675E-4 4.919932526077364E-4 0.0 0.31605646547520994 8.855878546939256E-5 46-47 1.1807838062585675E-4 5.116729827120459E-4 0.0 0.3643111636909767 1.0331858304762466E-4 48-49 1.229983131519341E-4 5.215128477642007E-4 0.0 0.4103518922700087 1.1807838062585675E-4 50-51 1.2791824567801147E-4 6.002317681814385E-4 0.0 0.45841471311725845 1.1807838062585675E-4 52-53 1.2791824567801147E-4 6.100716332335932E-4 0.0 0.6174072526299745 1.3283817820408883E-4 54-55 1.2791824567801147E-4 6.149915657596705E-4 0.0 1.1376015584771864 1.6235777336055302E-4 56-57 1.2791824567801147E-4 6.19911498285748E-4 0.0 1.7131155856476123 1.7711757093878512E-4 58-59 1.2791824567801147E-4 6.19911498285748E-4 0.0 2.313175156190638 1.7711757093878512E-4 60-61 1.2791824567801147E-4 6.248314308118253E-4 0.0 2.773789079147053 1.8695743599093985E-4 62-63 1.3283817820408883E-4 6.592709584943669E-4 0.0 2.7830237924985 1.9679730104309458E-4 64-65 1.377581107301662E-4 7.281500138594499E-4 0.0 2.7894984237028178 2.066371660952493E-4 66-67 1.377581107301662E-4 7.281500138594499E-4 0.0 2.795343303543798 2.066371660952493E-4 68-69 1.377581107301662E-4 7.379898789116046E-4 0.0 2.800568271886492 2.066371660952493E-4 70-71 1.377581107301662E-4 7.379898789116046E-4 0.0 2.805153649000796 2.066371660952493E-4 72-73 1.4759797578232093E-4 7.42909811437682E-4 0.0 2.8086320412967325 2.1647703114740404E-4 74-75 1.5743784083447566E-4 7.724294065941462E-4 0.0 2.8115397214196447 2.1647703114740404E-4 76-77 1.5743784083447566E-4 7.921091366984557E-4 0.0 2.8141915650512006 2.1647703114740404E-4 78-79 1.6235777336055302E-4 7.97029069224533E-4 0.0 2.816666291111817 2.1647703114740404E-4 80-81 1.672777058866304E-4 7.97029069224533E-4 0.0 2.817817555322919 2.2631689619955877E-4 82-83 1.672777058866304E-4 7.97029069224533E-4 0.0 2.8184079472260484 2.5583649135602293E-4 84-85 1.672777058866304E-4 7.97029069224533E-4 0.0 2.818816301625713 2.5583649135602293E-4 86-87 1.672777058866304E-4 8.363885294331519E-4 0.0 2.8189934191966515 2.6567635640817767E-4 88-89 1.672777058866304E-4 8.855878546939256E-4 0.0 2.819062298252017 2.6567635640817767E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13390 0.0 51.688564 1 GTATCAA 23295 0.0 35.138573 1 TATCTCG 9430 0.0 30.755074 94-95 TCAACGC 28690 0.0 28.220562 4 ATCAACG 28785 0.0 28.097708 3 CAACGCA 29670 0.0 27.288437 5 TATCAAC 30815 0.0 26.563463 2 AACGCAG 30605 0.0 26.560137 6 CCGTCTT 5220 0.0 25.507954 92-93 TGCCGTC 5175 0.0 24.919893 90-91 GTGGTAT 6655 0.0 24.332977 1 TGGTATC 6415 0.0 23.860134 2 GCCGTCT 5145 0.0 23.41196 90-91 TATGCCG 5480 0.0 23.390213 88-89 ACGCAGA 35235 0.0 23.095217 7 CGCAGAG 35560 0.0 22.834255 8 TCTCGTA 4915 0.0 22.546425 82-83 ATGCCGT 5555 0.0 21.367004 88-89 CGTATGC 6275 0.0 20.252827 86-87 CTCGTAT 6255 0.0 19.943361 84-85 >>END_MODULE