##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140370_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9955300 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.38258435205368 34.0 31.0 34.0 31.0 34.0 2 32.47205508623547 34.0 31.0 34.0 31.0 34.0 3 32.524386407240364 34.0 31.0 34.0 31.0 34.0 4 36.0503642280996 37.0 35.0 37.0 35.0 37.0 5 36.09656594979559 37.0 35.0 37.0 35.0 37.0 6 36.08592006268018 37.0 35.0 37.0 35.0 37.0 7 36.053367653410746 37.0 35.0 37.0 35.0 37.0 8 36.03684369130011 37.0 35.0 37.0 35.0 37.0 9 37.77835364077426 39.0 38.0 39.0 35.0 39.0 10-11 37.71603788936547 39.0 37.0 39.0 35.0 39.0 12-13 37.7048150231535 39.0 37.0 39.0 35.0 39.0 14-15 39.04610222695449 40.0 38.0 41.0 36.0 41.0 16-17 39.05977132783542 40.0 38.0 41.0 36.0 41.0 18-19 39.1062061916768 40.0 38.5 41.0 36.0 41.0 20-21 39.133233976519264 40.0 39.0 41.0 36.0 41.0 22-23 39.0943908189849 40.0 39.0 41.0 36.0 41.0 24-25 39.05963089800488 40.0 39.0 41.0 36.0 41.0 26-27 39.00242079435962 40.0 39.0 41.0 35.0 41.0 28-29 38.96382134962737 40.0 38.0 41.0 35.0 41.0 30-31 38.88511962987131 40.0 38.0 41.0 35.0 41.0 32-33 38.782673190953524 40.0 38.0 41.0 35.0 41.0 34-35 38.71512587197546 40.0 38.0 41.0 35.0 41.0 36-37 38.668838300421754 40.0 38.0 41.0 35.0 41.0 38-39 38.626515998045825 40.0 38.0 41.0 35.0 41.0 40-41 38.57628498427346 40.0 38.0 41.0 34.5 41.0 42-43 38.51365016991291 40.0 38.0 41.0 34.0 41.0 44-45 38.47439922401581 40.0 38.0 41.0 34.0 41.0 46-47 38.39901371528977 40.0 38.0 41.0 34.0 41.0 48-49 38.33288318207475 40.0 38.0 41.0 34.0 41.0 50-51 38.25431539307675 40.0 38.0 41.0 34.0 41.0 52-53 38.145604756638434 40.0 37.0 41.0 33.5 41.0 54-55 38.03236685009253 40.0 37.0 41.0 33.0 41.0 56-57 37.889902536879916 40.0 37.0 41.0 33.0 41.0 58-59 37.74215661097041 39.0 36.0 41.0 33.0 41.0 60-61 37.56356818714268 39.0 36.0 41.0 33.0 41.0 62-63 37.34834789457323 39.0 35.5 41.0 32.5 41.0 64-65 37.11696087956914 38.5 35.0 40.0 32.0 41.0 66-67 36.83926371770117 38.0 35.0 40.0 32.0 41.0 68-69 36.5676913913667 37.0 35.0 40.0 32.0 41.0 70-71 36.25717563197625 37.0 35.0 39.5 31.0 41.0 72-73 35.928611205766856 36.5 35.0 39.0 31.0 41.0 74-75 35.605457688282264 36.0 34.5 39.0 31.0 40.0 76-77 35.276931638462045 35.5 34.0 37.5 31.0 40.0 78-79 34.980876540643436 35.0 34.0 37.0 31.0 39.0 80-81 34.697991843661036 35.0 34.0 37.0 31.0 39.0 82-83 34.422020303210196 35.0 34.0 36.0 31.0 38.5 84-85 34.1929864094039 35.0 34.0 36.0 30.0 37.0 86-87 33.999359148479414 35.0 34.0 35.5 30.0 37.0 88-89 33.859567271404806 35.0 34.0 35.0 30.0 36.5 90-91 33.76343185763953 35.0 34.0 35.0 30.0 36.0 92-93 33.6829858775216 35.0 34.0 35.0 30.0 36.0 94-95 33.59567461591372 35.0 34.0 35.0 30.0 36.0 96-97 33.60097118322537 35.0 34.0 35.0 30.0 35.5 98-99 33.68806502306695 35.0 34.0 35.0 31.0 35.0 100 32.895103397586745 34.0 32.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 5.0 19 25.0 20 76.0 21 285.0 22 1025.0 23 3237.0 24 8052.0 25 17477.0 26 31902.0 27 52432.0 28 78257.0 29 107419.0 30 142810.0 31 184864.0 32 237978.0 33 313063.0 34 439235.0 35 648691.0 36 1098640.0 37 2180767.0 38 2913395.0 39 1451808.0 40 43857.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.240916898536454 20.139212278886625 14.26009261398451 24.35977820859241 2 14.353664351901383 20.979620964341887 41.73311960705546 22.933595076701273 3 17.96925797392082 26.319154516434818 30.240735158378502 25.470852351265865 4 12.41592165297312 18.3953207628742 38.577509181543334 30.61124840260934 5 13.433985940900673 37.60109912430484 35.11491000251737 13.850004932277123 6 29.55239569425675 37.859857915736505 18.863880398565634 13.723865991441112 7 26.387621137820854 32.8272608350151 22.834224969571462 17.95089305759258 8 24.428053398692153 36.54945606862676 21.094201078822337 17.92828945385875 9 25.697166333510797 17.048476690807913 21.14583186845198 36.10852510722932 10-11 24.193560214157284 26.891037939589967 28.507473406125385 20.407928440127368 12-13 25.230033248621336 24.393142346287906 28.66255662812773 21.714267776963027 14-15 22.363535001456512 25.57983184836218 26.55983245105622 25.49680069912509 16-17 21.723910881640933 28.76109710405513 27.200636846704768 22.314355167599167 18-19 21.740716000522333 27.647017166735306 29.217100438962163 21.395166393780197 20-21 22.586898602203817 26.728407541002298 29.152801255477584 21.5318926013163 22-23 22.292431040921382 26.84282450936629 28.971458304260363 21.893286145451963 24-25 22.072551284720355 27.00775258773438 29.06087504207846 21.858821085466804 26-27 22.008400507385943 27.158266284936 29.002388103602065 21.83094510407599 28-29 21.898882572446926 27.006214032505195 29.081247690506906 22.01365570454098 30-31 22.33553965765086 26.918227379150927 28.96195887927559 21.784274083922625 32-33 22.09258802519838 27.076144733262236 28.974591107583976 21.856676133955407 34-35 22.191827097919287 27.11910608412267 28.946079018001292 21.742987799956754 36-37 22.185661269365035 26.97710600639645 28.87144182696743 21.965790897271084 38-39 21.933298740516268 27.051627224860397 28.99419306634055 22.02088096828279 40-41 22.24021469732638 26.911677479209324 28.871471514684966 21.976636308779334 42-43 22.19725099510786 26.969909513044666 28.652284137742406 22.180555354105067 44-45 22.1964789034914 27.21244906339995 28.388865424109937 22.202206608998708 46-47 22.424753367206947 27.173072272042226 27.93625304033467 22.465921320416157 48-49 22.346726323699514 27.27943166993107 27.86764836440556 22.50619364196385 50-51 22.260440698843745 27.429581520317125 27.86658738703163 22.4433903938075 52-53 22.437511945303953 27.386037399924145 27.823875270257005 22.3525753845149 54-55 22.382315744371336 27.35860469002626 27.75466339945638 22.504416166146022 56-57 22.43136517797816 27.509608298008104 27.62496832957685 22.434058194436886 58-59 22.290168926175344 27.61982533500289 27.773314988609915 22.316690750211855 60-61 22.449691409642185 27.70463730683478 27.6076187073458 22.238052576177235 62-63 22.316976146163352 27.84070651574594 27.560633603652914 22.28168373443779 64-65 22.332482439291766 27.78377191171585 27.495342603426394 22.388403045565997 66-67 22.365855124723193 27.767856122713148 27.396006972264868 22.470281780298787 68-69 22.338375104529476 27.659409624482574 27.502954661173725 22.499260609814232 70-71 22.404865191931002 27.36654638472932 27.61633431639277 22.612254106946907 72-73 22.47286093293712 27.393149149409258 27.49284730379532 22.641142613858296 74-75 22.369210902955633 27.525715126210542 27.458296342742912 22.646777628090913 76-77 22.522533542047036 27.437785828722006 27.442485683068696 22.597194946162265 78-79 22.437336971036483 27.457486585736373 27.39391034813406 22.711266095093087 80-81 22.464969075496416 27.51316157398333 27.342030985740223 22.67983836478003 82-83 22.50036155787461 27.521499647636382 27.43660809511929 22.541530699369723 84-85 22.588374062109292 27.485630426423135 27.40184465515502 22.52415085631255 86-87 22.41584189312777 27.53718751203124 27.49990533574668 22.547065259094317 88-89 22.4874871706256 27.53802565316838 27.442427130019315 22.53206004618671 90-91 22.532278636546756 27.56163967325479 27.430294928359327 22.475786761839124 92-93 22.556256264947077 27.546745384657882 27.47624910876606 22.42074924162898 94-95 22.452366850495935 27.590971056819484 27.51236540467526 22.44429668800932 96-97 22.4757956696783 27.717695184457057 27.576986953482123 22.229522192382525 98-99 23.54675247047988 29.636471587509526 27.75542388023291 19.06135206177768 100 22.638039692074337 30.526086759043537 21.43504996432736 25.40082358455477 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2282.0 1 2052.5 2 2872.5 3 3991.0 4 5004.5 5 8443.5 6 11542.0 7 13585.0 8 14838.0 9 14211.5 10 12100.0 11 9580.5 12 9674.0 13 13305.5 14 23897.0 15 39539.5 16 53204.0 17 62476.5 18 65251.0 19 61294.0 20 53434.0 21 44502.5 22 38337.5 23 37924.5 24 42968.5 25 53437.5 26 68643.0 27 86660.0 28 106083.0 29 128083.0 30 150977.5 31 173758.5 32 199404.0 33 224904.5 34 248843.5 35 272076.0 36 297133.5 37 319843.0 38 337402.0 39 352603.0 40 367928.0 41 380593.0 42 387884.5 43 396360.0 44 402949.5 45 412231.5 46 422322.5 47 425068.5 48 424556.0 49 417525.0 50 406054.5 51 392949.5 52 376590.5 53 358531.5 54 339612.5 55 317962.5 56 292755.5 57 265790.5 58 238430.0 59 209147.0 60 175973.5 61 143740.0 62 114735.0 63 88904.0 64 67037.0 65 49639.5 66 36777.5 67 27911.0 68 21460.5 69 16042.0 70 11926.5 71 8715.0 72 6099.5 73 4163.0 74 2827.5 75 1887.0 76 1281.0 77 896.0 78 658.5 79 484.5 80 341.5 81 234.0 82 164.0 83 113.5 84 76.5 85 54.5 86 39.0 87 27.0 88 18.0 89 13.0 90 9.5 91 6.0 92 4.0 93 3.0 94 2.5 95 2.5 96 2.0 97 2.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0051329442608459815 3 3.0134702118469562E-5 4 2.008980141231304E-5 5 0.004680923729068938 6 0.005052585055196729 7 7.031430494309564E-5 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.01087301300586203 26-27 0.0021712759789778266 28-29 0.0 30-31 3.7759842467951084E-4 32-33 0.0027095275920983315 34-35 5.36371747721293E-4 36-37 0.0016409483990821052 38-39 3.0655303086427006E-5 40-41 1.0285984836504013E-5 42-43 1.0360309818848947E-5 44-45 0.0 46-47 0.002006607017632795 48-49 0.0 50-51 6.882612209431437E-4 52-53 5.4158360128182004E-6 54-55 1.3089767663168863E-4 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0010768016060693274 64-65 5.97135014444696E-4 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0028989780688167695 74-75 3.2831777196635424E-4 76-77 0.003277739694807488 78-79 0.0 80-81 0.0 82-83 8.635070550079465E-4 84-85 4.5187627502068747E-4 86-87 0.0017251747199239099 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0015085435966095684 96-97 8.858924825003864E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 316.0 20-21 1102.0 22-23 2106.0 24-25 2766.0 26-27 4593.0 28-29 8453.0 30-31 20491.0 32-33 26320.0 34-35 35455.0 36-37 52254.0 38-39 62842.0 40-41 67982.0 42-43 79446.0 44-45 97774.0 46-47 94946.0 48-49 81582.0 50-51 69009.0 52-53 63615.0 54-55 68227.0 56-57 74131.0 58-59 77175.0 60-61 76883.0 62-63 76022.0 64-65 82288.0 66-67 85576.0 68-69 89255.0 70-71 84435.0 72-73 75461.0 74-75 76683.0 76-77 80456.0 78-79 83926.0 80-81 84536.0 82-83 81933.0 84-85 82717.0 86-87 86797.0 88-89 92506.0 90-91 97445.0 92-93 106931.0 94-95 130387.0 96-97 343119.0 98-99 640488.0 100-101 6406871.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.11950393749098 #Duplication Level Percentage of deduplicated Percentage of total 1 89.79805837259244 76.43566183224928 2 7.186575646674085 12.234355081083033 3 1.6931860375924492 4.323694667812657 4 0.6087700930012618 2.0727283331299065 5 0.27836749792525434 1.18472516678591 6 0.1467596816198899 0.7495266778505484 7 0.07936807760928233 0.47290399762020785 8 0.049776845490680816 0.33895843165919093 9 0.03630158511765376 0.2780975625623364 >10 0.1187648916295451 1.5934406269995058 >50 0.0030808430373540268 0.17865280121323066 >100 9.90427710109283E-4 0.13725482103417272 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.013470211846956E-5 0.0 1.0044900706156519E-5 0.0 3 0.0 3.013470211846956E-5 0.0 3.013470211846956E-5 0.0 4 0.0 9.040410635540868E-5 0.0 5.02245035307826E-5 0.0 5 0.0 1.004490070615652E-4 0.0 5.02245035307826E-5 0.0 6 0.0 1.004490070615652E-4 0.0 6.026940423693912E-5 3.013470211846956E-5 7 0.0 1.004490070615652E-4 0.0 6.026940423693912E-5 3.013470211846956E-5 8 0.0 1.2053880847387823E-4 0.0 8.035920564925215E-5 4.0179602824626076E-5 9 0.0 2.2098781553544342E-4 0.0 8.035920564925215E-5 6.026940423693912E-5 10-11 0.0 2.2098781553544342E-4 0.0 1.4062860988619126E-4 6.026940423693912E-5 12-13 0.0 2.2098781553544342E-4 0.0 1.7076331200466084E-4 7.031430494309564E-5 14-15 5.0224503530782595E-6 3.616164254216347E-4 0.0 1.7578576235773908E-4 8.035920564925215E-5 16-17 1.506735105923478E-5 3.7166132612779124E-4 0.0 1.9085311341697386E-4 9.040410635540868E-5 18-19 2.0089801412313038E-5 3.9677357789318253E-4 0.0 1.9587556377005213E-4 1.1049390776772171E-4 20-21 2.0089801412313038E-5 4.218858296585738E-4 0.0 2.109429148292869E-4 1.4062860988619126E-4 22-23 2.0089801412313038E-5 4.4197563107088684E-4 0.0 2.4107761694775647E-4 1.6574086165158257E-4 24-25 4.0179602824626076E-5 4.721103331893564E-4 0.0 2.561449680069912E-4 2.109429148292869E-4 26-27 4.0179602824626076E-5 4.8215523389551294E-4 0.0 3.7166132612779124E-4 2.4107761694775647E-4 28-29 4.0179602824626076E-5 4.871776842485912E-4 0.0 6.529185459001738E-4 2.4107761694775647E-4 30-31 5.02245035307826E-5 5.876266913101564E-4 0.0 0.0018482617299327994 2.51122517653913E-4 32-33 6.026940423693912E-5 6.026940423693912E-4 0.0 0.004711058431187408 2.7121231906622603E-4 34-35 6.529185459001739E-5 6.830532480186433E-4 0.0 0.008422649242112243 3.113919218908521E-4 36-37 7.031430494309564E-5 7.634124536678954E-4 0.0 0.015122598013118639 3.113919218908521E-4 38-39 7.031430494309564E-5 7.835022550802085E-4 0.0 0.03438369511717377 3.1641437224393034E-4 40-41 7.031430494309564E-5 8.437716593171476E-4 0.0 0.055483009050455535 3.214368225970086E-4 42-43 7.031430494309564E-5 8.88973712494852E-4 0.0 0.06791357367432423 3.365041736562434E-4 44-45 7.031430494309564E-5 9.84400269203339E-4 0.0 0.08264944301025584 3.616164254216347E-4 46-47 7.031430494309564E-5 0.0010346247727341215 0.0 0.09794280433537914 3.7668377648086946E-4 48-49 7.53367552961739E-5 0.0010446696734402782 0.0 0.11215633883459061 4.3193073036473036E-4 50-51 8.538165600233041E-5 0.001215432985444939 0.0 0.12600323445802739 4.3695318071780857E-4 52-53 9.040410635540868E-5 0.0012405452372103302 0.0 0.1689401625264934 4.8215523389551294E-4 54-55 9.040410635540868E-5 0.0012606350386226432 0.0 0.2213594768615712 5.323797374262955E-4 56-57 9.040410635540868E-5 0.001295792191094191 0.0 0.2693640573362932 5.675368898978433E-4 58-59 9.040410635540868E-5 0.0013058370918003475 0.0 0.29110122246441594 5.976715920163128E-4 60-61 1.004490070615652E-4 0.0013108595421534258 0.0 0.3045362771589003 6.227838437817042E-4 62-63 1.004490070615652E-4 0.00135606159533113 0.0 0.31628378853475037 6.579409962532521E-4 64-65 1.004490070615652E-4 0.0015167800066296345 0.0 0.32254176167468585 6.830532480186434E-4 66-67 1.004490070615652E-4 0.0015368698080419475 0.0 0.32782035699577106 7.081654997840347E-4 68-69 1.1049390776772171E-4 0.0015820718612196518 0.0 0.3334354564905126 7.182104004901911E-4 70-71 1.1049390776772171E-4 0.0016071841129850432 0.0 0.33816660472311233 7.583900033148172E-4 72-73 1.1049390776772171E-4 0.0016071841129850432 0.0 0.3415768485128524 8.437716593171476E-4 74-75 1.1049390776772171E-4 0.0016373188151035127 0.0 0.3446003636254056 8.48794109670226E-4 76-77 1.2053880847387823E-4 0.0016925657689873734 0.0 0.3475485419826625 8.538165600233042E-4 78-79 1.3058370918003474E-4 0.0017176780207527648 0.0 0.34941187106365457 8.538165600233042E-4 80-81 1.3058370918003474E-4 0.0017176780207527648 0.0 0.3500396773577893 8.638614607294607E-4 82-83 1.3058370918003474E-4 0.001722700471105843 0.0 0.35043142848532943 8.839512621417737E-4 84-85 1.3058370918003474E-4 0.0017277229214589214 0.0 0.3505419223930971 8.839512621417737E-4 86-87 1.3058370918003474E-4 0.0017478127228712345 0.0 0.35058210199592177 8.889737124948519E-4 88 1.3058370918003474E-4 0.0018683515313451127 0.0 0.3505871244462748 8.939961628479302E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14220 0.0 51.74651 1 GTATCAA 26650 0.0 39.78165 1 TCAACGC 32390 0.0 32.047832 4 ATCAACG 32695 0.0 31.761871 3 TATCAAC 33530 0.0 31.251219 2 CAACGCA 33385 0.0 31.054487 5 AACGCAG 34330 0.0 30.223354 6 ACGCAGA 39865 0.0 26.015064 7 CGCAGAG 40480 0.0 25.598827 8 GTGGTAT 6405 0.0 24.755589 1 TGGTATC 6360 0.0 23.727655 2 GCAGAGT 47005 0.0 22.099579 9 GTACATG 33090 0.0 21.402367 1 TACATGG 33470 0.0 20.664047 2 CTTATAC 9810 0.0 20.409645 1 GAGTACT 28095 0.0 20.370619 12-13 ACATGGG 34025 0.0 19.66394 3 CAGAGTA 45715 0.0 19.213371 10-11 AGAGTAC 43060 0.0 18.601543 10-11 GTACTTT 31025 0.0 18.249588 14-15 >>END_MODULE