##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140369_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9842733 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.401416151388034 34.0 31.0 34.0 31.0 34.0 2 32.486168729762355 34.0 31.0 34.0 31.0 34.0 3 32.53881579435305 34.0 31.0 34.0 31.0 34.0 4 36.05998374638426 37.0 35.0 37.0 35.0 37.0 5 36.10437903781399 37.0 35.0 37.0 35.0 37.0 6 36.093313412037084 37.0 36.0 37.0 35.0 37.0 7 36.06068487278889 37.0 35.0 37.0 35.0 37.0 8 36.046326360778046 37.0 35.0 37.0 35.0 37.0 9 37.7875916170844 39.0 38.0 39.0 35.0 39.0 10-11 37.727978956657665 39.0 37.5 39.0 35.0 39.0 12-13 37.714696720920905 39.0 37.0 39.0 35.0 39.0 14-15 39.06109492150198 40.0 38.0 41.0 36.0 41.0 16-17 39.07461083217436 40.0 38.0 41.0 36.0 41.0 18-19 39.11838312590619 40.0 38.5 41.0 36.0 41.0 20-21 39.14311147695027 40.0 39.0 41.0 36.0 41.0 22-23 39.10466167705915 40.0 39.0 41.0 36.0 41.0 24-25 39.07125993219742 40.0 39.0 41.0 36.0 41.0 26-27 39.012803963241616 40.0 39.0 41.0 35.0 41.0 28-29 38.97906879545156 40.0 38.0 41.0 35.0 41.0 30-31 38.903605155496024 40.0 38.0 41.0 35.0 41.0 32-33 38.80395247401397 40.0 38.0 41.0 35.0 41.0 34-35 38.73994821946405 40.0 38.0 41.0 35.0 41.0 36-37 38.69333958614981 40.0 38.0 41.0 35.0 41.0 38-39 38.65400178136831 40.0 38.0 41.0 35.0 41.0 40-41 38.595694423392615 40.0 38.0 41.0 35.0 41.0 42-43 38.527981440403785 40.0 38.0 41.0 34.0 41.0 44-45 38.482214679126294 40.0 38.0 41.0 34.0 41.0 46-47 38.40307281257032 40.0 38.0 41.0 34.0 41.0 48-49 38.32855513866075 40.0 38.0 41.0 34.0 41.0 50-51 38.25136445492762 40.0 37.5 41.0 34.0 41.0 52-53 38.141365291312894 40.0 37.0 41.0 33.5 41.0 54-55 38.02361045677546 40.0 37.0 41.0 33.0 41.0 56-57 37.87961096775572 40.0 37.0 41.0 33.0 41.0 58-59 37.72730484633682 39.0 36.0 41.0 33.0 41.0 60-61 37.5406951407694 39.0 36.0 41.0 33.0 41.0 62-63 37.31982710767409 39.0 35.0 41.0 32.5 41.0 64-65 37.08168972845928 38.5 35.0 40.0 32.0 41.0 66-67 36.796096504510885 38.0 35.0 40.0 32.0 41.0 68-69 36.516849870981844 37.0 35.0 40.0 32.0 41.0 70-71 36.204193224758185 37.0 35.0 39.0 31.0 41.0 72-73 35.876052074352245 36.0 35.0 39.0 31.0 41.0 74-75 35.556631348556344 36.0 34.0 39.0 31.0 40.0 76-77 35.235902793054066 35.0 34.0 37.5 31.0 39.5 78-79 34.947939419886545 35.0 34.0 37.0 31.0 39.0 80-81 34.669773599916695 35.0 34.0 37.0 31.0 39.0 82-83 34.400742531235124 35.0 34.0 36.0 31.0 38.5 84-85 34.17929578046673 35.0 34.0 36.0 30.0 37.0 86-87 33.990370964365866 35.0 34.0 35.5 30.0 37.0 88-89 33.8544025488229 35.0 34.0 35.0 30.0 36.5 90-91 33.76248108778175 35.0 34.0 35.0 30.0 36.0 92-93 33.68351953878866 35.0 34.0 35.0 30.0 36.0 94-95 33.59760073938125 35.0 34.0 35.0 30.0 36.0 96-97 33.60795913042222 35.0 34.0 35.0 30.0 35.5 98-99 33.69240536704968 35.0 34.0 35.0 31.0 35.0 100 32.90656354693472 34.0 32.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 11.0 19 17.0 20 85.0 21 306.0 22 1084.0 23 3223.0 24 8189.0 25 17307.0 26 31705.0 27 51886.0 28 77495.0 29 106664.0 30 141937.0 31 183322.0 32 235038.0 33 309749.0 34 436310.0 35 647373.0 36 1094375.0 37 2168193.0 38 2865761.0 39 1419066.0 40 43635.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.480989070820065 19.96406892272705 14.338862996690047 24.216079009762836 2 14.512214030066023 20.83141726560082 41.613810968801104 23.042557735532053 3 18.120409683085892 26.12714155523925 30.155241482799994 25.59720727887487 4 12.6204848899614 18.141281563403965 38.305081680607245 30.933151866027387 5 13.595737717809941 37.59449450475649 34.86198618017709 13.947781597256478 6 29.929250365595152 37.49359770318967 18.68838694227117 13.888764988944006 7 26.691736962247443 32.81015499367858 22.55435588765874 17.943752156415236 8 24.706542380048305 36.50120347671729 20.761835152899096 18.030418990335306 9 25.823213938648948 17.193476649219278 20.964654837228643 36.01865457490313 10-11 24.46188980235469 26.82717290004717 28.239199417478865 20.471737880119274 12-13 25.368137081438665 24.291144542882552 28.508408182971134 21.832310192707656 14-15 22.523942283103686 25.516195552597026 26.385918423267196 25.57394374103209 16-17 21.90532853019583 28.68562014229178 26.986645883821087 22.4224054436913 18-19 21.949406734897718 27.609323548652593 28.963556158640085 21.477713557809604 20-21 22.849776090813993 26.658983142255323 28.924638992126972 21.56660177480371 22-23 22.57793335683684 26.611101652465237 28.77334809999853 22.037616890699393 24-25 22.28994272297129 26.802462861411954 28.85688874432693 22.050705671289826 26-27 22.14585104855832 26.92008639133191 28.88968899689839 22.04437356321138 28-29 22.02867525769578 26.836445124090364 28.919946501278627 22.214933116935228 30-31 22.363186561973993 26.69663631855437 28.835465440115517 22.10471167935612 32-33 22.126249633865562 26.913724313127712 28.81097034439877 22.149055708607957 34-35 22.3204018482778 27.000767063322062 28.768895597637684 21.909935490762447 36-37 22.29845822517607 26.85487601445022 28.61924042823934 22.22742533213437 38-39 22.174003000933098 26.985461548498623 28.733384510676423 22.107150939891852 40-41 22.44802946190379 26.8344746336641 28.576730150133763 22.140765754298346 42-43 22.375317589320147 26.897881559332838 28.41023905143867 22.316561799908346 44-45 22.37826165394438 27.093286557891123 28.218392601838442 22.31005918632605 46-47 22.62743419006599 27.02464863736479 27.783790030205047 22.564127142364175 48-49 22.46505289730621 27.196038338555123 27.73179134955917 22.6071174145795 50-51 22.429740219214416 27.323979448106684 27.69426674987973 22.552013582799166 52-53 22.63298865153833 27.245347237636892 27.608111129834494 22.513552980990287 54-55 22.57960328524991 27.142503479604617 27.641790146238698 22.636103088906776 56-57 22.580123723005944 27.34662928243955 27.527333978736234 22.545913015818275 58-59 22.48042702065882 27.40488728117899 27.641202565367777 22.47348313279441 60-61 22.63868777503224 27.43218933717403 27.510891075635595 22.418231812158137 62-63 22.508814810809326 27.580464091584478 27.46367769675736 22.447043400848838 64-65 22.501110201212114 27.496507123000697 27.44338545203302 22.55899722375417 66-67 22.569146398793897 27.534305462659457 27.29214925565152 22.604398882895122 68-69 22.511522030821016 27.446904125941433 27.421965055632974 22.619608787604577 70-71 22.565869745926847 27.135751244325267 27.51459851077479 22.783780498973094 72-73 22.585995802515267 27.23943302659893 27.39705801462576 22.777513156260046 74-75 22.4452529001832 27.389420278974214 27.38955178486974 22.77577503597284 76-77 22.595172657595292 27.277907549369722 27.354731232894984 22.77218856014 78-79 22.58623387907386 27.31433683873623 27.29165640741359 22.807772874776322 80-81 22.571917580432206 27.36189443092653 27.242544584221772 22.823643404419492 82-83 22.62309589369208 27.333224602794658 27.355916463407404 22.687763040105864 84-85 22.67750877160208 27.318156283810925 27.319723508896605 22.684611435690393 86-87 22.494516794059397 27.399415462387488 27.404683392344282 22.70138435120884 88-89 22.56518438893489 27.335849265254318 27.37252527339177 22.72644107241902 90-91 22.618935246671423 27.31830455000468 27.40725260379744 22.655507599526455 92-93 22.62006543690046 27.332086042116398 27.414953990293945 22.6328945306892 94-95 22.519302935977194 27.423939563634825 27.407835221326987 22.64892227906099 96-97 22.544584653930507 27.554750120539396 27.47457819350718 22.426087032022917 98-99 23.64373658951316 29.448292875272465 27.627188447444517 19.280782087769857 100 22.73477216543212 30.478669011764236 21.2737058185496 25.512853004254044 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2401.0 1 2015.0 2 2542.0 3 3590.5 4 4470.0 5 7272.0 6 9907.0 7 12130.0 8 14074.5 9 14020.0 10 12054.5 11 9605.0 12 9570.0 13 12789.5 14 22261.5 15 36308.5 16 48786.0 17 56989.5 18 59137.0 19 55679.5 20 48877.0 21 41137.5 22 36272.0 23 36849.0 24 42557.0 25 53498.0 26 68968.5 27 86556.5 28 104643.5 29 124325.5 30 143757.5 31 164020.0 32 188131.0 33 212642.5 34 236503.0 35 258248.0 36 282732.0 37 305317.5 38 320470.5 39 333775.5 40 348537.5 41 362502.0 42 371963.5 43 381174.0 44 393446.5 45 406240.0 46 409173.5 47 407375.5 48 407526.5 49 404890.5 50 399692.5 51 390276.5 52 377213.0 53 361052.0 54 343561.0 55 324548.0 56 301978.5 57 276857.0 58 250305.5 59 220939.5 60 187586.0 61 154301.0 62 122915.0 63 95556.0 64 72854.5 65 54418.0 66 40480.0 67 30900.5 68 24049.5 69 18104.5 70 13401.5 71 9795.0 72 6906.5 73 4845.0 74 3392.0 75 2289.0 76 1582.5 77 1077.5 78 750.0 79 555.5 80 385.5 81 254.0 82 183.5 83 134.0 84 97.0 85 73.5 86 53.0 87 37.5 88 24.0 89 14.5 90 10.5 91 6.5 92 3.5 93 1.0 94 0.5 95 1.0 96 1.0 97 0.5 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.005354203959408429 3 3.0479339427372457E-5 4 5.0798899045620764E-5 5 0.005018931225707332 6 0.005709796252727773 7 9.143801828211737E-5 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.01084944000882184 26-27 0.002160346619227827 28-29 0.0 30-31 3.869445716157013E-4 32-33 0.0027907326045524756 34-35 5.525035419058077E-4 36-37 0.003071098655757522 38-39 3.0981095387229874E-5 40-41 2.597720936295518E-5 42-43 0.0 44-45 0.0 46-47 0.002944798657512621 48-49 0.0 50-51 0.0014247867275753061 52-53 5.455177858436826E-6 54-55 4.0097891586946016E-4 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0016323982072186688 64-65 0.0010056276293448543 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0027798316986757275 74-75 3.2278615620387225E-4 76-77 0.0031538989940630116 78-79 0.0 80-81 0.0 82-83 9.250495087738774E-4 84-85 6.644990207102403E-4 86-87 0.0016588638859127128 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0016223764543707288 96-97 0.0010785344710809296 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 272.0 20-21 948.0 22-23 1794.0 24-25 2473.0 26-27 4347.0 28-29 7916.0 30-31 19178.0 32-33 24551.0 34-35 33807.0 36-37 49754.0 38-39 58830.0 40-41 61833.0 42-43 73953.0 44-45 90512.0 46-47 89493.0 48-49 76521.0 50-51 65779.0 52-53 61808.0 54-55 66520.0 56-57 69773.0 58-59 72696.0 60-61 70989.0 62-63 70147.0 64-65 74672.0 66-67 78793.0 68-69 82593.0 70-71 78950.0 72-73 71627.0 74-75 72191.0 76-77 75898.0 78-79 79888.0 80-81 81069.0 82-83 77759.0 84-85 78199.0 86-87 82636.0 88-89 88338.0 90-91 94113.0 92-93 102916.0 94-95 125963.0 96-97 339317.0 98-99 640404.0 100-101 6443513.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.38424760117212 #Duplication Level Percentage of deduplicated Percentage of total 1 90.32917317041968 77.12688487592268 2 6.839808931656447 11.680238787305251 3 1.5533090968165681 3.9788438557121673 4 0.5495823560784093 1.8770270387453776 5 0.2559936408477032 1.0928912207232913 6 0.15233922561700414 0.7804422095671862 7 0.08576420767533545 0.5126038640428432 8 0.05564930302264746 0.38012590944947094 9 0.03593206276848303 0.27612289298205117 >10 0.1374608375436412 1.8443260647013824 >50 0.003927948968644022 0.2274749355917427 >100 9.584476299191984E-4 0.13050582081238218 >500 6.046297224072436E-5 0.03343631338789738 >1k 4.0307983287386896E-5 0.05907621105627714 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.0159779809124153E-5 2 0.0 2.0319559618248307E-5 0.0 0.0 1.0159779809124153E-5 3 0.0 2.0319559618248307E-5 0.0 1.0159779809124153E-5 1.0159779809124153E-5 4 0.0 4.0639119236496614E-5 0.0 1.0159779809124153E-5 1.0159779809124153E-5 5 0.0 5.0798899045620764E-5 0.0 1.0159779809124153E-5 1.0159779809124153E-5 6 1.0159779809124153E-5 5.0798899045620764E-5 0.0 1.0159779809124153E-5 2.0319559618248307E-5 7 1.0159779809124153E-5 5.0798899045620764E-5 0.0 1.0159779809124153E-5 2.0319559618248307E-5 8 1.0159779809124153E-5 5.0798899045620764E-5 0.0 1.0159779809124153E-5 3.0479339427372457E-5 9 1.0159779809124153E-5 1.2191735770948983E-4 0.0 2.0319559618248307E-5 3.0479339427372457E-5 10-11 1.0159779809124153E-5 1.2191735770948983E-4 0.0 2.5399449522810382E-5 3.0479339427372457E-5 12-13 1.0159779809124153E-5 1.2191735770948983E-4 0.0 4.0639119236496614E-5 3.0479339427372457E-5 14-15 1.523966971368623E-5 1.930358163733589E-4 0.0 4.0639119236496614E-5 3.5559229331934535E-5 16-17 2.0319559618248307E-5 1.930358163733589E-4 0.0 6.0958678854744914E-5 6.0958678854744914E-5 18-19 2.0319559618248307E-5 2.0827548608704513E-4 0.0 8.127823847299323E-5 7.111845866386907E-5 20-21 2.0319559618248307E-5 2.3367493560985553E-4 0.0 9.651790818667945E-5 7.111845866386907E-5 22-23 2.0319559618248307E-5 2.997135043691625E-4 0.0 1.269972476140519E-4 7.619834856843115E-5 24-25 3.5559229331934535E-5 3.5559229331934533E-4 0.0 1.7271625675511059E-4 9.143801828211737E-5 26-27 5.0798899045620764E-5 3.860716327467178E-4 0.0 2.2351515580073134E-4 1.0159779809124153E-4 28-29 5.0798899045620764E-5 3.860716327467178E-4 0.0 5.33388439979018E-4 1.066776879958036E-4 30-31 5.0798899045620764E-5 4.724297611242731E-4 0.0 0.0016052452098416162 1.2191735770948983E-4 32-33 5.5878788950182836E-5 4.927493207425214E-4 0.0 0.004267107519832144 1.4223691732773814E-4 34-35 6.0958678854744914E-5 5.587878895018284E-4 0.0 0.0076655538659841736 1.4223691732773814E-4 36-37 6.0958678854744914E-5 6.248264582611354E-4 0.0 0.013446468577375817 1.4223691732773814E-4 38-39 6.0958678854744914E-5 6.502259077839458E-4 0.0 0.027512683723108205 1.5747658704142438E-4 40-41 8.127823847299323E-5 6.908650270204423E-4 0.0 0.04246787960213896 1.6255647694598646E-4 42-43 8.127823847299323E-5 7.213443664478149E-4 0.0 0.05168787977891913 1.6255647694598646E-4 44-45 8.127823847299323E-5 8.381818342527426E-4 0.0 0.0628890370184785 1.6255647694598646E-4 46-47 9.143801828211737E-5 9.245399626302979E-4 0.0 0.07479629895477202 1.6255647694598646E-4 48-49 9.143801828211737E-5 9.34699742439422E-4 0.0 0.08548946720387518 1.6255647694598646E-4 50-51 1.0159779809124153E-4 0.001061696990053474 0.0 0.0962029550125966 1.6255647694598646E-4 52-53 1.0159779809124153E-4 0.001066776879958036 0.0 0.12084042104972267 1.7779614665967266E-4 54-55 1.0159779809124153E-4 0.0010769366597671603 0.0 0.14710853174621316 2.0827548608704513E-4 56-57 1.0159779809124153E-4 0.0011074159991945327 0.0 0.1759877058536486 2.2351515580073137E-4 58-59 1.0159779809124153E-4 0.0011175757790036567 0.0 0.19589579438962734 2.3367493560985553E-4 60-61 1.0159779809124153E-4 0.0011632947881447156 0.0 0.20460780557595132 2.3367493560985553E-4 62-63 1.0159779809124153E-4 0.0012140936871903362 0.0 0.2144932713302291 2.3367493560985553E-4 64-65 1.0159779809124153E-4 0.0013106115953770156 0.0 0.219517282445841 2.3367493560985553E-4 66-67 1.0159779809124153E-4 0.0013106115953770156 0.0 0.22422634038737005 2.387548255144176E-4 68-69 1.0159779809124153E-4 0.0013207713751861398 0.0 0.229296070512123 2.4383471541897966E-4 70-71 1.0159779809124153E-4 0.0013461708247089503 0.0 0.2339035306555608 2.539944952281038E-4 72-73 1.0159779809124153E-4 0.0013664903843271987 0.0 0.23747977314837249 3.1495317408284875E-4 74-75 1.0159779809124153E-4 0.001396969723754571 0.0 0.24024831314635886 3.1495317408284875E-4 76-77 1.0159779809124153E-4 0.0014426887328956297 0.0 0.2431895694011003 3.1495317408284875E-4 78-79 1.0159779809124153E-4 0.0014731680723230021 0.0 0.24496245097779246 3.1495317408284875E-4 80-81 1.0159779809124153E-4 0.0014731680723230021 0.0 0.24548567963796236 3.1495317408284875E-4 82-83 1.0159779809124153E-4 0.0014782479622275644 0.0 0.24587683116061362 3.4543251351022117E-4 84-85 1.0159779809124153E-4 0.0014833278521321264 0.0 0.24595302950918205 3.4543251351022117E-4 86-87 1.0159779809124153E-4 0.001534126751177747 0.0 0.24598350884860942 3.4543251351022117E-4 88 1.0159779809124153E-4 0.0016255647694598644 0.0 0.24598858873851398 3.4543251351022117E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13720 0.0 52.963516 1 GTATCAA 26625 0.0 40.336876 1 TCAACGC 32810 0.0 32.24944 4 ATCAACG 33210 0.0 31.899595 3 TATCAAC 33760 0.0 31.55881 2 CAACGCA 33840 0.0 31.255224 5 AACGCAG 34900 0.0 30.316626 6 ACGCAGA 40585 0.0 26.110754 7 CGCAGAG 41320 0.0 25.604948 8 GTGGTAT 6220 0.0 23.969648 1 TGGTATC 5910 0.0 23.56442 2 GCAGAGT 47620 0.0 22.208513 9 GTACATG 35270 0.0 21.66863 1 TACATGG 35460 0.0 21.191109 2 GAGTACT 27000 0.0 20.60498 12-13 ACATGGG 35975 0.0 20.269129 3 CAGAGTA 46150 0.0 19.204573 10-11 AGAGTAC 43535 0.0 18.876642 10-11 GTACTTT 29720 0.0 18.655184 14-15 CATGGGG 26000 0.0 18.614824 4 >>END_MODULE