##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140368_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9800409 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.42822529141386 34.0 31.0 34.0 31.0 34.0 2 32.51662823459715 34.0 31.0 34.0 31.0 34.0 3 32.5654595639835 34.0 31.0 34.0 31.0 34.0 4 36.08291153971227 37.0 35.0 37.0 35.0 37.0 5 36.129239300114925 37.0 35.0 37.0 35.0 37.0 6 36.11664247890062 37.0 36.0 37.0 35.0 37.0 7 36.08315601930491 37.0 36.0 37.0 35.0 37.0 8 36.06824174378845 37.0 35.0 37.0 35.0 37.0 9 37.812856075700516 39.0 38.0 39.0 35.0 39.0 10-11 37.75501593862052 39.0 37.5 39.0 35.0 39.0 12-13 37.74352504063861 39.0 37.5 39.0 35.0 39.0 14-15 39.09755174503431 40.0 38.0 41.0 36.0 41.0 16-17 39.114561137193355 40.0 38.5 41.0 36.0 41.0 18-19 39.161416732709824 40.0 38.5 41.0 36.0 41.0 20-21 39.18790018050157 40.0 39.0 41.0 36.0 41.0 22-23 39.14919307275031 40.0 39.0 41.0 36.0 41.0 24-25 39.11759881400543 40.0 39.0 41.0 36.0 41.0 26-27 39.06012065508274 40.0 39.0 41.0 36.0 41.0 28-29 39.02547709521444 40.0 39.0 41.0 35.0 41.0 30-31 38.94326645881007 40.0 38.0 41.0 35.0 41.0 32-33 38.84111353714816 40.0 38.0 41.0 35.0 41.0 34-35 38.78005237403708 40.0 38.0 41.0 35.0 41.0 36-37 38.733222314301045 40.0 38.0 41.0 35.0 41.0 38-39 38.69997327206458 40.0 38.0 41.0 35.0 41.0 40-41 38.63869380212537 40.0 38.0 41.0 35.0 41.0 42-43 38.57511548948723 40.0 38.0 41.0 35.0 41.0 44-45 38.53104914669066 40.0 38.0 41.0 34.0 41.0 46-47 38.457829351373896 40.0 38.0 41.0 34.0 41.0 48-49 38.39440582498463 40.0 38.0 41.0 34.0 41.0 50-51 38.326948943535356 40.0 38.0 41.0 34.0 41.0 52-53 38.2183814470324 40.0 37.5 41.0 34.0 41.0 54-55 38.11338652583454 40.0 37.0 41.0 33.5 41.0 56-57 37.98226560115802 40.0 37.0 41.0 33.0 41.0 58-59 37.83822371242667 39.5 36.5 41.0 33.0 41.0 60-61 37.66569081336634 39.0 36.0 41.0 33.0 41.0 62-63 37.455235979114875 39.0 35.5 41.0 33.0 41.0 64-65 37.22377299749894 39.0 35.0 40.5 32.5 41.0 66-67 36.94881792728686 38.0 35.0 40.0 32.0 41.0 68-69 36.67522271687485 37.5 35.0 40.0 32.0 41.0 70-71 36.36473568206653 37.0 35.0 39.5 32.0 41.0 72-73 36.0373159753865 36.5 35.0 39.0 31.0 41.0 74-75 35.717855917755806 36.0 35.0 39.0 31.0 40.5 76-77 35.38992929471387 35.5 34.0 38.5 31.0 40.0 78-79 35.09380736414061 35.0 34.0 37.0 31.0 39.0 80-81 34.80660016319807 35.0 34.0 37.0 31.0 39.0 82-83 34.52719654818811 35.0 34.0 36.5 31.0 38.5 84-85 34.29418992866732 35.0 34.0 36.0 31.0 37.0 86-87 34.09195348171795 35.0 34.0 36.0 31.0 37.0 88-89 33.94627279974715 35.0 34.0 35.0 31.0 36.5 90-91 33.842785981112485 35.0 34.0 35.0 31.0 36.0 92-93 33.75761371822823 35.0 34.0 35.0 31.0 36.0 94-95 33.666404728633836 35.0 34.0 35.0 30.0 36.0 96-97 33.67045322807425 35.0 34.0 35.0 30.5 36.0 98-99 33.74857121827232 35.0 34.0 35.0 31.0 35.0 100 32.97184493244513 34.0 32.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 6.0 19 26.0 20 90.0 21 297.0 22 933.0 23 3063.0 24 7359.0 25 16267.0 26 29574.0 27 48787.0 28 73261.0 29 102828.0 30 135984.0 31 177086.0 32 228183.0 33 301241.0 34 420756.0 35 623449.0 36 1056349.0 37 2108809.0 38 2910600.0 39 1507374.0 40 48087.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.39567032355486 20.065458492599646 14.453080478580027 24.085790705265463 2 14.35373825486303 20.99685231706791 41.740967541834834 22.908441886234225 3 17.76435407223394 26.331253385701224 30.454622955964993 25.44976958609984 4 12.29579672515608 18.36132094935659 38.928244401303374 30.414637924183957 5 13.3124345403354 37.6753686353614 35.234075189123836 13.77812163517936 6 29.592002710253862 38.043198752630154 18.836733735925762 13.528064801190226 7 26.297875067191107 33.046015245902105 23.059467752553875 17.59664193435291 8 24.491957427491037 36.52488380842065 21.0090517650845 17.974106999003816 9 25.7008865650403 17.06537961834042 21.23004254210207 36.003691274517216 10-11 24.059669346452786 26.960094216476065 28.729938719904446 20.250297717166703 12-13 25.126385031481853 24.57859666877168 28.835699612128433 21.459318687618037 14-15 22.249642846538343 25.78407186883731 26.869138828797862 25.097146455826486 16-17 21.510592057943704 28.848678662288478 27.48966395177997 22.151065327987844 18-19 21.491312250335675 27.773172527799606 29.59122930481779 21.144285917046933 20-21 22.422522972100317 26.881815284318535 29.57102844692984 21.124633296651307 22-23 22.10347537489656 26.81992182714194 29.411176690876246 21.665426107085253 24-25 21.84092811034339 26.945647294283326 29.493989777555797 21.719434817817486 26-27 21.7650159965593 27.12453218283906 29.415401625346817 21.695050195254822 28-29 21.721603711259885 27.111580794283213 29.4721218500906 21.694693644366303 30-31 22.014071571761242 26.966901929305013 29.341519298931452 21.677507200002292 32-33 21.772687389038545 27.08246204246979 29.324272933400575 21.820577635091084 34-35 21.96159211973148 27.15142282768774 29.23233835486649 21.65464669771429 36-37 21.964660576995758 27.07923597995037 29.165634938100155 21.790468504953715 38-39 21.825377473097817 27.221839919614077 29.205537365053292 21.74724524223482 40-41 22.120971125773796 27.107041761883238 29.036530534050055 21.735456578292915 42-43 22.011589072385338 27.181453741432016 28.826077599643135 21.98087958653951 44-45 22.111120689134165 27.320501397843543 28.59792162554673 21.970456287475564 46-47 22.224367726426152 27.406472572075955 28.157279452118907 22.211880249378986 48-49 22.151651903817548 27.51042262318814 28.110448103744456 22.227477369249854 50-51 22.206127069403063 27.684797453091004 27.933397453603213 22.175678023902716 52-53 22.370787231500653 27.621483207535668 27.78936586923317 22.21836369173051 54-55 22.309954236362582 27.507512366881485 27.885561007857802 22.29697238889813 56-57 22.288573758380128 27.653682178010303 27.835428416404973 22.222315647204596 58-59 22.245994736340016 27.694449588390768 27.854452506411224 22.20510316885799 60-61 22.318075902971703 27.628544383830366 27.888585620556626 22.1647940926413 62-63 22.261687395142637 27.70145706325129 27.84834926208852 22.188506279517554 64-65 22.291408202521552 27.643574673460275 27.771593554292988 22.29342356972519 66-67 22.341843607731487 27.686335137668337 27.67829481775043 22.293526436849742 68-69 22.29158832065417 27.630712672106807 27.75336151824444 22.324337488994587 70-71 22.28831772726665 27.447502080380374 27.819842032992508 22.444338159360463 72-73 22.33352708169192 27.506418248375898 27.73019968075163 22.429854989180555 74-75 22.21733824219226 27.654108046184145 27.679103353951216 22.449450357672376 76-77 22.32242749487315 27.5795949706315 27.654587883807242 22.443389650688108 78-79 22.30467458587188 27.568115372368705 27.63950705308976 22.487702988669657 80-81 22.32001810182127 27.604668379974356 27.629522702270197 22.44579081593418 82-83 22.337967815457986 27.616948235601757 27.68253222910733 22.362551719832933 84-85 22.43473078063487 27.592051367049475 27.637289151327256 22.335928700988404 86-87 22.262876825563406 27.63895656331642 27.710917975892485 22.38724863522769 88-89 22.35287968291272 27.62391891813217 27.669784306001787 22.353417092953322 90-91 22.36150462785177 27.643422576664616 27.660957342573226 22.334115452910385 92-93 22.34644825075569 27.634239617387962 27.7101849524636 22.309127179392743 94-95 22.259636698808357 27.70947987179792 27.719690257526107 22.311193171867615 96-97 22.31686117303388 27.824348019066747 27.759787508177542 22.099003299721833 98-99 23.35332569797965 29.762578794675782 27.957139868592783 18.926955638751792 100 22.45619988563628 30.7391555923535 21.64982273932511 25.15482178268511 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2410.0 1 2099.5 2 2894.5 3 4118.0 4 5157.0 5 8579.0 6 11725.0 7 14176.5 8 16297.5 9 16022.0 10 13378.0 11 10411.0 12 10394.0 13 14151.5 14 25130.0 15 41105.5 16 55005.5 17 64436.0 18 67227.5 19 63289.0 20 55844.0 21 47943.0 22 43142.0 23 44247.5 24 51036.0 25 63418.5 26 79998.0 27 97942.0 28 116822.0 29 138348.0 30 159904.0 31 181435.0 32 205099.0 33 227818.0 34 249885.5 35 271793.0 36 295290.5 37 316189.5 38 331188.5 39 344002.5 40 358537.0 41 370342.5 42 376949.0 43 383315.0 44 388565.0 45 393585.0 46 394933.0 47 393531.5 48 393636.0 49 389236.5 50 381549.5 51 371073.0 52 356837.5 53 339723.0 54 320655.5 55 300535.5 56 278906.0 57 254608.5 58 228168.0 59 201140.0 60 171053.0 61 141017.0 62 112458.5 63 87462.5 64 67000.5 65 50101.0 66 37142.0 67 28499.0 68 21937.0 69 16319.5 70 12310.0 71 9041.5 72 6580.0 73 4720.5 74 3270.0 75 2287.0 76 1587.0 77 1078.5 78 768.5 79 538.5 80 344.0 81 231.0 82 179.0 83 128.5 84 89.0 85 63.5 86 46.0 87 35.5 88 23.5 89 14.0 90 9.0 91 7.0 92 4.5 93 2.0 94 1.0 95 1.5 96 2.0 97 2.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0051222352046736 3 2.0407311572404785E-5 4 3.061096735860717E-5 5 0.00490795843316335 6 0.006009953258073209 7 5.101827893101197E-5 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.011192545570707032 26-27 0.0024097389395024826 28-29 0.0 30-31 4.1936123306113044E-4 32-33 0.0029981757253855538 34-35 6.372919941889249E-4 36-37 0.0028377642442221187 38-39 8.3008941308113E-5 40-41 7.831198618200667E-5 42-43 5.256673096804421E-6 44-45 0.0 46-47 0.0027523098385491833 48-49 0.0 50-51 0.0012478068024542016 52-53 0.0 54-55 3.5922394805688033E-4 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0013505443206477143 64-65 8.670023056519592E-4 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0027075347664386107 74-75 2.9335724254728917E-4 76-77 0.0030013173790467587 78-79 0.0 80-81 0.0 82-83 8.322930188193253E-4 84-85 5.141343366560414E-4 86-87 0.0016334454670432115 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0015069718025659813 96-97 9.004268700376663E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 239.0 20-21 1037.0 22-23 1914.0 24-25 2716.0 26-27 4574.0 28-29 8525.0 30-31 19708.0 32-33 25413.0 34-35 34089.0 36-37 49651.0 38-39 60082.0 40-41 63285.0 42-43 75537.0 44-45 92568.0 46-47 90742.0 48-49 77195.0 50-51 66566.0 52-53 62758.0 54-55 67273.0 56-57 69012.0 58-59 69510.0 60-61 67475.0 62-63 65540.0 64-65 69377.0 66-67 72284.0 68-69 73379.0 70-71 71379.0 72-73 69686.0 74-75 70786.0 76-77 74363.0 78-79 76640.0 80-81 78105.0 82-83 75605.0 84-85 76290.0 86-87 80770.0 88-89 86113.0 90-91 91202.0 92-93 99184.0 94-95 122938.0 96-97 334398.0 98-99 637164.0 100-101 6465337.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.54633693945246 #Duplication Level Percentage of deduplicated Percentage of total 1 90.22066381631817 77.1804730573182 2 6.903553846518797 11.811474868679001 3 1.6023301706529214 4.112204300007756 4 0.5607399092700105 1.9187698085524132 5 0.2726250892107775 1.1661038869886728 6 0.14116960540560633 0.7245925577782528 7 0.08314596860692182 0.49789831319234107 8 0.05628957043648298 0.3852293246989132 9 0.03432410211274313 0.2642671084032806 >10 0.12157992018647087 1.620330664762423 >50 0.003072302807078448 0.1776928329871853 >100 3.882648325245145E-4 0.05714716025605023 >500 7.829073600812757E-5 0.03877835857633955 >1k 3.914290551161119E-5 0.04503775779900744 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.0407311572404785E-5 0.0 0.0 0.0 3 0.0 2.0407311572404785E-5 0.0 0.0 0.0 4 0.0 7.142559050341674E-5 0.0 0.0 0.0 5 0.0 7.142559050341674E-5 0.0 0.0 0.0 6 4.081462314480957E-5 7.142559050341674E-5 0.0 1.0203655786202392E-5 1.0203655786202392E-5 7 4.081462314480957E-5 7.142559050341674E-5 0.0 1.0203655786202392E-5 1.0203655786202392E-5 8 4.081462314480957E-5 7.142559050341674E-5 0.0 1.0203655786202392E-5 2.0407311572404785E-5 9 4.081462314480957E-5 1.2244386943442871E-4 0.0 2.0407311572404785E-5 2.0407311572404785E-5 10-11 4.081462314480957E-5 1.2244386943442871E-4 0.0 2.0407311572404785E-5 2.0407311572404785E-5 12-13 4.081462314480957E-5 1.2244386943442871E-4 0.0 3.061096735860718E-5 2.550913946550598E-5 14-15 5.101827893101196E-5 2.499895667619586E-4 0.0 3.061096735860718E-5 3.061096735860718E-5 16-17 8.162924628961914E-5 2.652950504412622E-4 0.0 3.061096735860718E-5 5.101827893101196E-5 18-19 8.162924628961914E-5 2.806005341205658E-4 0.0 3.571279525170837E-5 6.122193471721436E-5 20-21 8.673107418272034E-5 3.061096735860718E-4 0.0 4.081462314480957E-5 6.122193471721436E-5 22-23 9.693472996892273E-5 3.2651698515847655E-4 0.0 4.081462314480957E-5 8.162924628961914E-5 24-25 1.0713838575512511E-4 3.826370919825897E-4 0.0 7.652741839651793E-5 9.693472996892273E-5 26-27 1.1224021364822632E-4 4.1834988723429806E-4 0.0 1.1734204154132751E-4 1.1224021364822632E-4 28-29 1.1224021364822632E-4 4.1834988723429806E-4 0.0 2.499895667619586E-4 1.1224021364822632E-4 30-31 1.1224021364822632E-4 4.8467364984461364E-4 0.0 7.193577329272687E-4 1.1734204154132752E-4 32-33 1.1224021364822632E-4 4.999791335239172E-4 0.0 0.0016938068605095971 1.4285118100683348E-4 34-35 1.1224021364822632E-4 5.254882729894231E-4 0.0 0.0028723291038159735 1.7856397625854185E-4 36-37 1.1224021364822632E-4 5.560992403480303E-4 0.0 0.004754903596370315 1.8366580415164307E-4 38-39 1.1224021364822632E-4 5.918120355997387E-4 0.0 0.0077955930206586276 1.9386945993784546E-4 40-41 1.1224021364822632E-4 6.530339703169531E-4 0.0 0.01121381770903643 1.9897128783094665E-4 42-43 1.1224021364822632E-4 6.836449376755602E-4 0.0 0.014698366160024547 2.0407311572404784E-4 44-45 1.1224021364822632E-4 7.448668723927746E-4 0.0 0.018662486432964177 2.0407311572404784E-4 46-47 1.1224021364822632E-4 7.754778397513818E-4 0.0 0.023198011429931137 2.0917494361714903E-4 48-49 1.1734204154132752E-4 7.80579667644483E-4 0.0 0.027493750515922347 2.2448042729645263E-4 50-51 1.275456973275299E-4 9.081253649720129E-4 0.0 0.031513990895686086 2.2448042729645263E-4 52-53 1.326475252206311E-4 9.081253649720129E-4 0.0 0.0354015837502292 2.550913946550598E-4 54-55 1.326475252206311E-4 9.183290207582153E-4 0.0 0.039381009506848134 2.8570236201366696E-4 56-57 1.326475252206311E-4 9.387363323306201E-4 0.0 0.04364103579758763 2.8570236201366696E-4 58-59 1.326475252206311E-4 9.438381602237212E-4 0.0 0.04782453466993061 2.9080418990676813E-4 60-61 1.326475252206311E-4 9.540418160099237E-4 0.0 0.051472341613497966 2.9590601779986935E-4 62-63 1.479530088999347E-4 9.591436439030248E-4 0.0 0.05512525038495843 3.2651698515847655E-4 64-65 1.530548367930359E-4 0.0010305692344064416 0.0 0.058869992058494705 3.2651698515847655E-4 66-67 1.6325849257923828E-4 0.001040772890192644 0.0 0.06301777813558598 3.316188130515778E-4 68-69 1.6325849257923828E-4 0.0010815875133374534 0.0 0.06696149109695321 3.3672064094467894E-4 70-71 1.6325849257923828E-4 0.0011224021364822632 0.0 0.0703337993342931 3.571279525170837E-4 72-73 1.8876763204474426E-4 0.0011326057922684655 0.0 0.07310919370814015 3.877389198756909E-4 74-75 1.9386945993784546E-4 0.0011632167596270725 0.0 0.07541521991582187 3.877389198756909E-4 76-77 1.9386945993784546E-4 0.0012142350385580848 0.0 0.07775695891875532 3.877389198756909E-4 78-79 1.9897128783094665E-4 0.0012397441780235907 0.0 0.07917016524514436 3.877389198756909E-4 80-81 2.0407311572404784E-4 0.0012550496617028941 0.0 0.07956300599291316 4.132480593411969E-4 82-83 2.0407311572404784E-4 0.0012652533174890967 0.0 0.07988442115017852 4.4896085459290527E-4 84-85 2.0407311572404784E-4 0.0012805588011684 0.0 0.07999155953593365 4.4896085459290527E-4 86-87 2.0917494361714903E-4 0.0012958642848477039 0.0 0.08004767964275776 4.4896085459290527E-4 88 2.1427677151025022E-4 0.0013468825637787158 0.0 0.08004767964275776 4.4896085459290527E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15005 0.0 54.83669 1 GTATCAA 28210 0.0 39.44631 1 TCAACGC 34300 0.0 31.892181 4 ATCAACG 34660 0.0 31.585604 3 TATCAAC 35400 0.0 31.096207 2 CAACGCA 35245 0.0 31.024942 5 AACGCAG 36200 0.0 30.217817 6 ACGCAGA 41140 0.0 26.567453 7 CGCAGAG 41900 0.0 26.105974 8 TGGTATC 5950 0.0 22.712883 2 GCAGAGT 48370 0.0 22.605183 9 GTGGTAT 6345 0.0 22.377348 1 GAGTACT 30240 0.0 21.090889 12-13 CAGAGTA 47215 0.0 20.164902 10-11 GTACATG 31065 0.0 19.810324 1 TACATGG 30655 0.0 19.461441 2 AGAGTAC 44155 0.0 19.38336 10-11 GTACTTT 33030 0.0 19.199816 14-15 ACATGGG 31170 0.0 18.644915 3 AGTACTT 32275 0.0 17.700829 12-13 >>END_MODULE