##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140367_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8559076 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.38814890766246 34.0 31.0 34.0 31.0 34.0 2 32.481731088729674 34.0 31.0 34.0 31.0 34.0 3 32.53394116374244 34.0 31.0 34.0 31.0 34.0 4 36.0535174591276 37.0 35.0 37.0 35.0 37.0 5 36.10014340332999 37.0 35.0 37.0 35.0 37.0 6 36.085529092159014 37.0 35.0 37.0 35.0 37.0 7 36.04965325696372 37.0 35.0 37.0 35.0 37.0 8 36.03404946982595 37.0 35.0 37.0 35.0 37.0 9 37.780521168406494 39.0 38.0 39.0 35.0 39.0 10-11 37.719255209324 39.0 37.0 39.0 35.0 39.0 12-13 37.704506888360385 39.0 37.0 39.0 35.0 39.0 14-15 39.044693434197804 40.0 38.0 41.0 36.0 41.0 16-17 39.0530199171032 40.0 38.0 41.0 36.0 41.0 18-19 39.10273760859233 40.0 38.5 41.0 36.0 41.0 20-21 39.13322335015552 40.0 39.0 41.0 36.0 41.0 22-23 39.08848525499869 40.0 39.0 41.0 36.0 41.0 24-25 39.05060744702578 40.0 39.0 41.0 36.0 41.0 26-27 38.99561004709525 40.0 38.5 41.0 35.0 41.0 28-29 38.96373371814663 40.0 38.0 41.0 35.0 41.0 30-31 38.883496378630056 40.0 38.0 41.0 35.0 41.0 32-33 38.769045482110016 40.0 38.0 41.0 35.0 41.0 34-35 38.68145639534424 40.0 38.0 41.0 35.0 41.0 36-37 38.628813817839195 40.0 38.0 41.0 35.0 41.0 38-39 38.55826745920836 40.0 38.0 41.0 34.5 41.0 40-41 38.54038057339736 40.0 38.0 41.0 34.5 41.0 42-43 38.487032898347834 40.0 38.0 41.0 34.0 41.0 44-45 38.447024922474455 40.0 38.0 41.0 34.0 41.0 46-47 38.375716171655306 40.0 38.0 41.0 34.0 41.0 48-49 38.313812363505335 40.0 38.0 41.0 34.0 41.0 50-51 38.23054795006398 40.0 38.0 41.0 33.5 41.0 52-53 38.15399655988689 40.0 37.0 41.0 33.0 41.0 54-55 38.02485735430393 40.0 37.0 41.0 33.0 41.0 56-57 37.898779765219984 40.0 37.0 41.0 33.0 41.0 58-59 37.76263446993253 39.0 36.0 41.0 33.0 41.0 60-61 37.55889822511186 39.0 36.0 41.0 33.0 41.0 62-63 37.34785772497851 39.0 35.5 41.0 32.5 41.0 64-65 37.1378357386425 39.0 35.0 40.0 32.0 41.0 66-67 36.86615843885424 38.0 35.0 40.0 32.0 41.0 68-69 36.62366825403383 37.5 35.0 40.0 32.0 41.0 70-71 36.33547444716395 37.0 35.0 39.5 31.0 41.0 72-73 36.016374750674686 36.5 35.0 39.0 31.0 41.0 74-75 35.69885008389981 36.0 34.5 39.0 31.0 40.5 76-77 35.370704089315375 35.5 34.0 38.5 31.0 40.0 78-79 35.07289066826801 35.0 34.0 37.0 31.0 39.0 80-81 34.78192866137259 35.0 34.0 37.0 31.0 39.0 82-83 34.497841945339616 35.0 34.0 36.5 31.0 39.0 84-85 34.26241134218107 35.0 34.0 36.0 30.5 37.0 86-87 34.0589438126491 35.0 34.0 36.0 30.0 37.0 88-89 33.90724520536348 35.0 34.0 35.0 30.0 37.0 90-91 33.80399210444687 35.0 34.0 35.0 30.0 36.0 92-93 33.71779825813368 35.0 34.0 35.0 30.0 36.0 94-95 33.62618192576176 35.0 34.0 35.0 30.0 36.0 96-97 33.630986514496776 35.0 34.0 35.0 30.0 36.0 98-99 33.712175585013505 35.0 34.0 35.0 31.0 35.0 100 32.93205676931255 34.0 32.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 27.0 20 67.0 21 287.0 22 902.0 23 2766.0 24 7047.0 25 14811.0 26 27423.0 27 45342.0 28 67687.0 29 93814.0 30 124549.0 31 161019.0 32 207693.0 33 271622.0 34 377824.0 35 554006.0 36 919251.0 37 1811049.0 38 2537121.0 39 1295709.0 40 39058.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.5425305254913 20.463447222574025 14.280747127376832 24.71327512455784 2 13.964353748999844 20.71201366195814 42.663182163180764 22.660450425861256 3 17.6155600926502 26.54448056594901 30.770626498774696 25.069332842626103 4 11.981684462988511 19.111394319384157 38.38308639067413 30.5238348269532 5 13.016669907050826 37.750471569367896 35.64887991759454 13.583978605986735 6 28.869454166673968 38.396051207182516 18.844888132531562 13.889606493611955 7 25.648709194475945 32.98622023831083 22.57373870117258 18.791331866040647 8 23.7567466394737 36.99488122316007 21.45661517668496 17.79175696068127 9 24.90279324543911 17.11299210335321 20.964435880695532 37.01977877051215 10-11 23.639549409305395 27.100857615938917 28.93218847455029 20.327404500205397 12-13 24.916083231414234 24.297061972577414 28.869640835062103 21.917213960946253 14-15 21.969742995622425 25.61728041671788 26.48778910246854 25.92518748519116 16-17 21.514787343867493 29.12704011507784 27.063704072729344 22.294468468325316 18-19 21.586348806810456 27.62487446074787 29.146201061890327 21.642575670551352 20-21 22.199902379492567 26.744706599549406 29.120804939796308 21.934586081161726 22-23 21.78298013688085 27.307335106253998 28.992862061299274 21.916822695565877 24-25 21.793376063517933 27.319142554201136 29.258938945337153 21.628542436943775 26-27 21.714060117487726 27.258544904661804 29.434211047859044 21.59318392999143 28-29 21.266915042152622 26.93991090024726 29.828018851390514 21.965155206209605 30-31 21.819933451359283 26.781674602429806 29.029310949408295 22.369080996802616 32-33 22.013449816586736 26.888123047939967 29.61315114057416 21.485275994899137 34-35 21.921695793803085 27.537189313326998 29.235481158926763 21.305633733943154 36-37 21.53537573318946 27.210481747822833 29.10941197832195 22.14473054066575 38-39 21.433956070409028 26.99397098779821 29.58347919397025 21.988593747822513 40-41 21.760108250430957 26.90343709631965 29.56230052317003 21.77415413007936 42-43 22.18495643128721 26.806646893839297 29.28193775722101 21.726458917652483 44-45 21.7311491440456 27.423004340355305 28.963225403103753 21.88262111249534 46-47 22.353849346327188 26.940778699584563 28.261586682409924 22.443785271678333 48-49 22.106644652181124 27.058049724480863 28.220884700086025 22.61442092325198 50-51 21.781945728400032 27.205215161951596 28.62087189278913 22.39196721685924 52-53 21.958536329392903 27.147943823250863 29.091319460689046 21.802200386667188 54-55 21.94110980156252 27.12244477471536 28.50780352610023 22.42864189762189 56-57 22.442572315006597 27.62806855403113 27.786812296358203 22.14254683460407 58-59 21.671545983515703 28.226252459400953 28.56436102439503 21.537840532688314 60-61 22.23692615281282 28.813243513281588 27.47440384447649 21.4754264894291 62-63 21.63729636511521 29.335522765592543 27.4542804746504 21.57290039464185 64-65 21.725380436652543 29.10718817118679 27.45454256260561 21.712888829555048 66-67 21.90265352462097 28.79845816923645 27.470091021257893 21.828797284884683 68-69 21.947076447607056 28.39975650676612 27.685537483426614 21.967629562200205 70-71 22.116082571366587 27.701533118783146 27.94600489248799 22.236379417362276 72-73 22.180607346331755 27.625522475818276 27.96580645143201 22.228063726417965 74-75 22.023630515765397 27.759753006964083 27.93286384037475 22.283752636895766 76-77 22.178110641093436 27.71409308345964 27.875538001216682 22.232258274230247 78-79 22.137225148389643 27.78028601261604 27.81120718965197 22.271281649342345 80-81 22.133194149213104 27.78850026060716 27.819295328110154 22.25901026206958 82-83 22.18666373441094 27.776833347078284 27.873363205688577 22.163139712822204 84-85 22.300572600486987 27.69599796734929 27.846552628983464 22.156876803180264 86-87 22.077294624635638 27.74400668908864 27.9577323947671 22.220966291508624 88-89 22.19223400760147 27.750506272831903 27.88961572927855 22.167643990288074 90-91 22.169909204563226 27.795567510975367 27.929127249689778 22.10539603477163 92-93 22.17307274885928 27.75002182179971 27.949237472935174 22.127667956405837 94-95 22.082495891556192 27.86684648335534 27.93696371554612 22.11369390954235 96-97 22.104984752580705 27.98582417637703 27.988195917299553 21.920995153742716 98-99 23.20423756955749 29.908961822828417 28.16786577888536 18.718934828728734 100 22.272695265368696 30.895668382802832 21.899617162140025 24.932019189688443 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2078.0 1 1743.0 2 2522.0 3 3732.0 4 4567.0 5 7427.0 6 10233.0 7 12741.0 8 15039.0 9 14801.5 10 12018.0 11 9059.5 12 8975.5 13 12318.0 14 21958.5 15 35976.5 16 48050.0 17 55918.0 18 58161.0 19 55070.0 20 49072.0 21 42790.0 22 39214.0 23 40603.0 24 46912.5 25 58082.0 26 73302.5 27 90159.0 28 107230.5 29 125310.0 30 143590.0 31 161831.5 32 181207.0 33 200636.0 34 220636.5 35 238913.5 36 257774.0 37 275452.5 38 286260.5 39 294779.0 40 307659.0 41 319229.5 42 326046.0 43 332991.0 44 339598.5 45 358573.5 46 392798.0 47 405323.5 48 392031.5 49 371020.0 50 349732.0 51 332444.0 52 312657.5 53 292795.5 54 273837.5 55 253452.0 56 232660.5 57 211441.5 58 189198.5 59 166336.0 60 141167.0 61 115432.5 62 90721.5 63 70286.5 64 53666.0 65 39909.5 66 29684.5 67 22672.5 68 17631.0 69 13291.5 70 9963.0 71 7349.0 72 5341.0 73 3956.0 74 2896.0 75 2048.0 76 1401.0 77 936.0 78 645.0 79 451.5 80 302.0 81 204.0 82 156.0 83 121.0 84 87.5 85 63.5 86 50.0 87 40.0 88 28.0 89 18.0 90 12.0 91 6.5 92 4.5 93 2.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.5 99 0.5 100 0.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.004907071744660288 3 1.1683504153953068E-5 4 4.673401661581227E-5 5 0.004907071744660288 6 0.005970270622670017 7 2.3367008307906136E-5 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.010875895917266985 26-27 0.002110436388553437 28-29 0.0 30-31 3.573335954560757E-4 32-33 0.0024663946389976337 34-35 5.479166999295309E-4 36-37 0.002947230023964886 38-39 7.146620178696474E-5 40-41 5.9973831018573355E-5 42-43 1.2083370665913952E-5 44-45 0.0 46-47 0.0031359834508793167 48-49 0.0 50-51 0.0014934519661295134 52-53 1.8966666904803704E-5 54-55 3.439278174487193E-4 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0017322130371753995 64-65 0.0010248736161128234 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0026005700365404625 74-75 3.463194161931043E-4 76-77 0.0030580074066507597 78-79 0.0 80-81 0.0 82-83 8.796689805626143E-4 84-85 4.8093207892435766E-4 86-87 0.0016510277236690587 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0016131245062742715 96-97 8.065451216477669E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 231.0 20-21 1001.0 22-23 1725.0 24-25 2548.0 26-27 4444.0 28-29 8908.0 30-31 19990.0 32-33 25719.0 34-35 34379.0 36-37 49959.0 38-39 58545.0 40-41 59489.0 42-43 70048.0 44-45 85239.0 46-47 82343.0 48-49 70797.0 50-51 60986.0 52-53 57181.0 54-55 61536.0 56-57 63472.0 58-59 65246.0 60-61 66377.0 62-63 73322.0 64-65 95781.0 66-67 100052.0 68-69 104778.0 70-71 87058.0 72-73 58958.0 74-75 59381.0 76-77 61963.0 78-79 65171.0 80-81 65757.0 82-83 63083.0 84-85 64365.0 86-87 67153.0 88-89 71512.0 90-91 77341.0 92-93 84144.0 94-95 104412.0 96-97 281332.0 98-99 541656.0 100-101 5481694.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.6756562186258 #Duplication Level Percentage of deduplicated Percentage of total 1 90.69958484357126 78.61446035073466 2 6.699052252691084 11.612895000897264 3 1.494257527495762 3.885472552659494 4 0.5253788841557373 1.8215023819043168 5 0.2240418541783939 0.9709487365674981 6 0.12145654775680514 0.6316395587321969 7 0.06633931351838608 0.4025002472609488 8 0.04163587416101022 0.288705337211335 9 0.02817507190586394 0.21978835618029524 >10 0.09736544386326954 1.2972523447665556 >50 0.002250800899330079 0.13056728807955983 >100 3.996664018164381E-4 0.058076043554469256 >500 2.0639835250297525E-5 0.012683806265757788 >1k 4.1279566096279834E-5 0.05350799518569041 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.3367008307906133E-5 0.0 1.1683504153953066E-5 0.0 3 0.0 2.3367008307906133E-5 0.0 1.1683504153953066E-5 0.0 4 0.0 2.3367008307906133E-5 0.0 3.50505124618592E-5 0.0 5 0.0 3.50505124618592E-5 0.0 3.50505124618592E-5 0.0 6 3.50505124618592E-5 3.50505124618592E-5 0.0 4.6734016615812266E-5 0.0 7 3.50505124618592E-5 3.50505124618592E-5 0.0 4.6734016615812266E-5 0.0 8 3.50505124618592E-5 5.841752076976534E-5 0.0 4.6734016615812266E-5 0.0 9 3.50505124618592E-5 1.1683504153953067E-4 0.0 7.01010249237184E-5 1.1683504153953066E-5 10-11 3.50505124618592E-5 1.402020498474368E-4 0.0 7.01010249237184E-5 1.1683504153953066E-5 12-13 3.50505124618592E-5 1.402020498474368E-4 0.0 9.346803323162453E-5 1.1683504153953066E-5 14-15 4.089226453883573E-5 1.8693606646324906E-4 0.0 1.051515373855776E-4 2.9208760384882665E-5 16-17 8.178452907767147E-5 1.8693606646324906E-4 0.0 1.2851854569348375E-4 4.6734016615812266E-5 18-19 8.178452907767147E-5 1.927778185402256E-4 0.0 1.6356905815534292E-4 4.6734016615812266E-5 20-21 8.178452907767147E-5 2.103030747711552E-4 0.0 1.927778185402256E-4 5.25757686927888E-5 22-23 8.178452907767147E-5 2.395118351560379E-4 0.0 1.9861957061720215E-4 7.01010249237184E-5 24-25 8.178452907767147E-5 2.7456234761789704E-4 0.0 2.044613226941787E-4 8.178452907767147E-5 26-27 8.178452907767147E-5 2.862458517718502E-4 0.0 2.5703709138696744E-4 8.178452907767147E-5 28-29 8.178452907767147E-5 3.0961286007975624E-4 0.0 4.907071744660288E-4 8.178452907767147E-5 30-31 9.346803323162453E-5 3.50505124618592E-4 0.0 0.0011099328946255413 8.178452907767147E-5 32-33 9.930978530860106E-5 3.621886287725451E-4 0.0 0.002377593095329449 9.346803323162453E-5 34-35 1.1099328946255415E-4 4.147643974653339E-4 0.0 0.004048334189344738 9.346803323162453E-5 36-37 1.2851854569348375E-4 4.7902367031207573E-4 0.0 0.006682964376061154 9.346803323162453E-5 38-39 1.2851854569348375E-4 4.907071744660288E-4 0.0 0.010637830532174267 9.346803323162453E-5 40-41 1.2851854569348375E-4 5.023906786199818E-4 0.0 0.015147663135600151 9.346803323162453E-5 42-43 1.2851854569348375E-4 5.37441191081841E-4 0.0 0.01926609834986861 9.346803323162453E-5 44-45 1.2851854569348375E-4 6.425927284674186E-4 0.0 0.02401544278845053 9.346803323162453E-5 46-47 1.2851854569348375E-4 7.12693753391137E-4 0.0 0.02864795218549292 9.346803323162453E-5 48-49 1.2851854569348375E-4 7.243772575450902E-4 0.0 0.03344987239276763 1.051515373855776E-4 50-51 1.2851854569348375E-4 8.937880677774096E-4 0.0 0.03787792046711584 1.051515373855776E-4 52-53 1.2851854569348375E-4 9.113133240083392E-4 0.0 0.04217160824369359 1.051515373855776E-4 54-55 1.2851854569348375E-4 9.171550760853158E-4 0.0 0.04654123879727204 1.051515373855776E-4 56-57 1.2851854569348375E-4 9.229968281622923E-4 0.0 0.05102186264031304 1.051515373855776E-4 58-59 1.2851854569348375E-4 9.229968281622923E-4 0.0 0.05549080297920009 1.051515373855776E-4 60-61 1.2851854569348375E-4 9.405220843932219E-4 0.0 0.05998311032639504 1.051515373855776E-4 62-63 1.5188555400138986E-4 9.63889092701128E-4 0.0 0.06407817853235559 1.051515373855776E-4 64-65 1.5188555400138986E-4 0.0010982493904715884 0.0 0.06807393695300754 1.051515373855776E-4 66-67 1.5188555400138986E-4 0.0010982493904715884 0.0 0.07261882006889528 1.051515373855776E-4 68-69 1.5188555400138986E-4 0.001150825159164377 0.0 0.07657952797708537 1.051515373855776E-4 70-71 1.6356905815534292E-4 0.0011566669112413536 0.0 0.07985675089226921 1.051515373855776E-4 72-73 1.8693606646324906E-4 0.0011566669112413536 0.0 0.08277762693075748 1.1683504153953067E-4 74-75 1.8693606646324906E-4 0.001215084432011119 0.0 0.08472877212446764 1.1683504153953067E-4 76-77 1.8693606646324906E-4 0.0012968689610887904 0.0 0.0868025941117943 1.226767936165072E-4 78-79 1.9861957061720215E-4 0.0013202359693966965 0.0 0.08821629811442264 1.2851854569348375E-4 80-81 1.9861957061720215E-4 0.001326077721473673 0.0 0.08862522075981098 1.2851854569348375E-4 82-83 1.9861957061720215E-4 0.0013319194735506496 0.0 0.08888809960327493 1.2851854569348375E-4 84-85 2.044613226941787E-4 0.0013436029777046028 0.0 0.08900493464481446 1.2851854569348375E-4 86-87 2.103030747711552E-4 0.001378653490166462 0.0 0.08906335216558423 1.2851854569348375E-4 88 2.3367008307906135E-4 0.0014137040026283212 0.0 0.08907503566973818 1.2851854569348375E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 13360 0.0 56.91511 1 GGTATCA 12465 0.0 53.334057 1 TATACAC 17835 0.0 44.59972 3 TTATACA 17760 0.0 43.600327 2 GTATCAA 23810 0.0 39.555344 1 TACACAT 23645 0.0 33.748077 5 TCAACGC 29090 0.0 31.93764 4 ATCAACG 29200 0.0 31.773876 3 ACACATC 24290 0.0 31.771418 6 ACATCTC 24465 0.0 31.508114 8 TATCAAC 29905 0.0 31.125803 2 CAACGCA 29830 0.0 31.102823 5 AACGCAG 30435 0.0 30.511267 6 CACATCT 26410 0.0 29.059568 7 CATCTCC 26855 0.0 28.32611 9 ATACACA 29755 0.0 28.139841 4 TGGTATC 5190 0.0 27.215946 2 GTGGTAT 5575 0.0 26.929472 1 ACGCAGA 35050 0.0 26.444384 7 CGCAGAG 35545 0.0 26.111807 8 >>END_MODULE