##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140366_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10293875 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.40880164175299 34.0 31.0 34.0 31.0 34.0 2 32.4988362497116 34.0 31.0 34.0 31.0 34.0 3 32.54878022124807 34.0 31.0 34.0 31.0 34.0 4 36.06756503260434 37.0 35.0 37.0 35.0 37.0 5 36.113065779407655 37.0 35.0 37.0 35.0 37.0 6 36.10325324525507 37.0 36.0 37.0 35.0 37.0 7 36.07017231120448 37.0 35.0 37.0 35.0 37.0 8 36.056448130563076 37.0 35.0 37.0 35.0 37.0 9 37.802749790530775 39.0 38.0 39.0 35.0 39.0 10-11 37.74473946885891 39.0 37.5 39.0 35.0 39.0 12-13 37.73046743816104 39.0 37.0 39.0 35.0 39.0 14-15 39.083788515015 40.0 38.0 41.0 36.0 41.0 16-17 39.09974829692414 40.0 38.0 41.0 36.0 41.0 18-19 39.14321914730847 40.0 38.5 41.0 36.0 41.0 20-21 39.16804453937676 40.0 39.0 41.0 36.0 41.0 22-23 39.13044887248543 40.0 39.0 41.0 36.0 41.0 24-25 39.09559702732909 40.0 39.0 41.0 36.0 41.0 26-27 39.036940641970986 40.0 39.0 41.0 35.5 41.0 28-29 39.00208600550357 40.0 39.0 41.0 35.0 41.0 30-31 38.92086864080862 40.0 38.0 41.0 35.0 41.0 32-33 38.819543998325145 40.0 38.0 41.0 35.0 41.0 34-35 38.75194573324657 40.0 38.0 41.0 35.0 41.0 36-37 38.70083705911841 40.0 38.0 41.0 35.0 41.0 38-39 38.65852837968359 40.0 38.0 41.0 35.0 41.0 40-41 38.60978964489408 40.0 38.0 41.0 35.0 41.0 42-43 38.54894230016021 40.0 38.0 41.0 34.0 41.0 44-45 38.50888622098121 40.0 38.0 41.0 34.0 41.0 46-47 38.43493303875402 40.0 38.0 41.0 34.0 41.0 48-49 38.36817969885689 40.0 38.0 41.0 34.0 41.0 50-51 38.29027692792385 40.0 38.0 41.0 34.0 41.0 52-53 38.17874447134438 40.0 37.0 41.0 33.5 41.0 54-55 38.06587590501881 40.0 37.0 41.0 33.0 41.0 56-57 37.925718613615544 40.0 37.0 41.0 33.0 41.0 58-59 37.769430164341095 39.0 36.0 41.0 33.0 41.0 60-61 37.58573875481923 39.0 36.0 41.0 33.0 41.0 62-63 37.368638494365484 39.0 35.5 41.0 33.0 41.0 64-65 37.13562011375603 38.5 35.0 40.0 32.0 41.0 66-67 36.85707982609009 38.0 35.0 40.0 32.0 41.0 68-69 36.58718020750267 37.0 35.0 40.0 32.0 41.0 70-71 36.28043761244156 37.0 35.0 39.5 31.5 41.0 72-73 35.95717112394157 36.5 35.0 39.0 31.0 41.0 74-75 35.63746885445978 36.0 34.5 39.0 31.0 40.5 76-77 35.31387958644998 35.5 34.0 37.5 31.0 40.0 78-79 35.021186697796374 35.0 34.0 37.0 31.0 39.0 80-81 34.74199903162386 35.0 34.0 37.0 31.0 39.0 82-83 34.46722059509817 35.0 34.0 36.0 31.0 38.5 84-85 34.2423098166489 35.0 34.0 36.0 31.0 37.0 86-87 34.048472475142376 35.0 34.0 35.5 30.5 37.0 88-89 33.905924649410736 35.0 34.0 35.0 30.0 36.5 90-91 33.80834178882331 35.0 34.0 35.0 30.0 36.0 92-93 33.72728354568647 35.0 34.0 35.0 30.0 36.0 94-95 33.637637852145275 35.0 34.0 35.0 30.0 36.0 96-97 33.644968998719634 35.0 34.0 35.0 30.5 35.5 98-99 33.72427836566572 35.0 34.0 35.0 31.0 35.0 100 32.95034038662335 34.0 32.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 20.0 20 87.0 21 294.0 22 1036.0 23 3174.0 24 8108.0 25 17205.0 26 32256.0 27 52935.0 28 79136.0 29 110529.0 30 145705.0 31 188615.0 32 243546.0 33 319637.0 34 448617.0 35 664176.0 36 1125549.0 37 2243674.0 38 3026168.0 39 1534974.0 40 48432.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.21467377445325 20.168954839649793 14.294723804203958 24.321647581693 2 14.379950997631488 20.87764174644286 41.71039056170082 23.032016694224833 3 17.849693905326607 26.14236389526431 30.4523447634972 25.55559743591188 4 12.4004492382796 18.498700537183833 38.42509555930816 30.6757546652284 5 13.464965802701684 37.59241032833118 35.1127625321846 13.829861336782548 6 29.619712686056033 37.79178045460772 18.880715263468268 13.70779159586798 7 26.527603914797414 32.85069963024581 22.62911718493324 17.992579270023526 8 24.549792959405472 36.44961688382654 20.968935410620393 18.031654746147588 9 25.519631819892897 17.111622202523343 21.005481414919068 36.363264562664696 10-11 24.159114036259428 26.803740088159223 28.651601073453875 20.385544802127477 12-13 25.313552962319825 24.21399618705298 28.694777234034802 21.77767361659239 14-15 22.405027261356874 25.55888331653532 26.45870966958507 25.577379752522738 16-17 21.819858896673992 28.763905720634842 27.055860888149507 22.360374494541656 18-19 21.84052166943935 27.61432890918143 29.03423152117157 21.510917900207648 20-21 22.674024018160026 26.658882050187994 29.012924620080987 21.654169311570993 22-23 22.3706641522439 26.804394112158263 28.83238346961679 21.992558265981046 24-25 22.220380437014324 26.990166762230533 28.886729286391816 21.902723514363327 26-27 22.20376291778657 27.056103712483203 28.8465849525285 21.893548417201732 28-29 22.068523341664825 27.050337760021915 28.8581719171665 22.02296698114676 30-31 22.61893254741717 26.83803451552048 28.74014108878697 21.80289184827538 32-33 21.960152251392234 27.208319112265734 28.78837772860279 22.043150907739246 34-35 22.269647270777682 27.10895964443839 28.80184988029392 21.81954320449001 36-37 22.16956184902368 27.082378683927267 28.6940995506067 22.053959916442352 38-39 22.092348211709023 26.975614739379868 28.83760913614158 22.094427912769532 40-41 22.363969765458307 26.865198949683034 28.705271876541328 22.06555940831733 42-43 22.38594241040243 26.889896081202018 28.491878707051203 22.232282801344343 44-45 22.35360423732402 27.119801377202986 28.263225979157685 22.263368406315305 46-47 22.634648043531 27.02270229826239 27.761008642184215 22.581641016022395 48-49 22.469514128669026 27.160855338298155 27.701898253708222 22.667732279324593 50-51 22.393458322437382 27.302080596384126 27.758191561524615 22.546269519653876 52-53 22.571997695785527 27.21594116264673 27.83470409520188 22.377357046365866 54-55 22.52041809425231 27.150501899462775 27.656019186246212 22.673060820038707 56-57 22.65763117462015 27.419175100237105 27.427494521502126 22.49569920364062 58-59 22.41448774475099 27.590087052543833 27.688056617029005 22.30736858567618 60-61 22.647923562463628 27.722081238093526 27.35275499957509 22.277240199867755 62-63 22.44345247629747 27.959706376945842 27.305396537185324 22.291444609571364 64-65 22.474779769177648 27.805033032090282 27.30068592324094 22.419501275491132 66-67 22.546718175673693 27.771194219599664 27.182025523803983 22.50006208092266 68-69 22.524542087294712 27.609210577408454 27.33552590226968 22.53072143302715 70-71 22.59108500570724 27.271874047581658 27.438090725257343 22.698950221453764 72-73 22.65310708857079 27.279572454827637 27.370229795783878 22.697090660817693 74-75 22.49502229805832 27.39799116861002 27.385350754533277 22.721635778798387 76-77 22.636063953820475 27.354010857686482 27.339298498231706 22.67062669026134 78-79 22.592728881997377 27.369404796681646 27.31344961748255 22.724416703838425 80-81 22.611209237701004 27.406043363310346 27.274175332764194 22.708572066224455 82-83 22.623127936058832 27.3983907263817 27.34445976517498 22.634021572384484 84-85 22.70826919279723 27.337140498573582 27.3388944433823 22.61569586524689 86-87 22.58154227833459 27.412725736855325 27.383313927383696 22.62241805742639 88-89 22.632440261812516 27.39110135053347 27.318171890877935 22.658286496776082 90-91 22.647333594727915 27.434627178404043 27.33913805282121 22.57890117404683 92-93 22.62041530539627 27.400593905752917 27.415293419824298 22.56369736902651 94-95 22.556779843248336 27.461399524984103 27.40936076380961 22.572459867957956 96-97 22.59296114310892 27.56899963491325 27.426362759012353 22.411676462965477 98-99 23.695625555350734 29.54895411173237 27.548993911794422 19.206426421122476 100 22.713163272049865 30.46970862642477 21.26961010503627 25.547517996489095 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1707.0 1 1543.0 2 2538.5 3 3831.5 4 4901.0 5 8372.5 6 11496.0 7 13552.5 8 14826.5 9 14099.5 10 11764.5 11 9291.0 12 9420.0 13 12802.0 14 22998.5 15 38574.0 16 52475.0 17 61750.5 18 64665.0 19 61255.0 20 54561.5 21 47205.5 22 42130.5 23 42818.5 24 49348.5 25 61452.0 26 77635.5 27 95938.0 28 115789.0 29 137469.0 30 158439.5 31 180010.0 32 204752.5 33 228924.5 34 251995.0 35 272893.5 36 295575.0 37 318439.0 38 334953.5 39 347393.0 40 361686.5 41 375184.0 42 384060.0 43 393996.5 44 414159.5 45 436093.0 46 437844.0 47 431713.0 48 428045.0 49 422221.5 50 416821.0 51 407185.5 52 392067.5 53 373813.0 54 355348.5 55 335840.5 56 313237.0 57 286297.0 58 255048.5 59 223073.5 60 189387.5 61 155884.0 62 124938.5 63 96684.0 64 73193.0 65 54886.0 66 40796.5 67 30752.0 68 23436.0 69 17494.5 70 13106.0 71 9753.5 72 7233.0 73 5221.5 74 3638.0 75 2493.5 76 1727.5 77 1140.5 78 775.0 79 565.5 80 413.0 81 298.0 82 218.0 83 159.5 84 113.5 85 80.5 86 59.5 87 49.5 88 33.5 89 18.0 90 13.0 91 9.5 92 6.0 93 2.5 94 1.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.004808684776141152 3 9.714514699275054E-6 4 5.828708819565033E-5 5 0.005032118614224478 6 0.005877281393061408 7 8.743063229347548E-5 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.010796846640511604 26-27 0.0020414507832463382 28-29 0.0 30-31 3.262574424435611E-4 32-33 0.002415530484897493 34-35 4.4531129535036774E-4 36-37 0.0030115533602057564 38-39 3.951924443946941E-5 40-41 2.4855096032883094E-5 42-43 1.5014127543311879E-5 44-45 0.0 46-47 0.00300194249633893 48-49 0.0 50-51 0.0013997776323621952 52-53 1.0442373942141835E-5 54-55 4.890348655041064E-4 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0016397793530277711 64-65 9.748812000458961E-4 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.002730018911792804 74-75 2.5292260694688727E-4 76-77 0.0030154498311783014 78-79 0.0 80-81 0.0 82-83 7.521029335237706E-4 84-85 4.7615457086388487E-4 86-87 0.001625507240447588 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.001259244178632416 96-97 8.869481535761164E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 287.0 20-21 1048.0 22-23 1927.0 24-25 2832.0 26-27 5049.0 28-29 9805.0 30-31 20722.0 32-33 26530.0 34-35 36182.0 36-37 52027.0 38-39 63252.0 40-41 65462.0 42-43 78667.0 44-45 95751.0 46-47 92898.0 48-49 79392.0 50-51 69311.0 52-53 66571.0 54-55 71961.0 56-57 74265.0 58-59 76358.0 60-61 75971.0 62-63 77244.0 64-65 87482.0 66-67 90990.0 68-69 93567.0 70-71 86860.0 72-73 74545.0 74-75 75433.0 76-77 78520.0 78-79 82443.0 80-81 83560.0 82-83 81007.0 84-85 82099.0 86-87 86263.0 88-89 92164.0 90-91 97548.0 92-93 105634.0 94-95 131018.0 96-97 352180.0 98-99 665937.0 100-101 6703113.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.48305386571968 #Duplication Level Percentage of deduplicated Percentage of total 1 88.96377149404525 74.26967327734954 2 7.517745808527672 12.55208756564208 3 1.9337950881625794 4.843173585310223 4 0.6993142621786197 2.3352356087409487 5 0.32922964486144163 1.3742548088079742 6 0.16967112182254696 0.8498798041541262 7 0.1088057714704066 0.6358406656395598 8 0.070005363081112 0.4675409197591789 9 0.044524701782235256 0.33453522695173055 >10 0.15905845320227643 2.026287813944813 >50 0.003360230470751217 0.18989143349116486 >100 6.769822255500946E-4 0.09582803472436541 >500 4.107816949065556E-5 0.02577125548427762 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.942902939855011E-5 0.0 1.942902939855011E-5 0.0 3 0.0 1.942902939855011E-5 0.0 2.9143544097825163E-5 0.0 4 9.714514699275054E-6 4.857257349637527E-5 0.0 2.9143544097825163E-5 0.0 5 9.714514699275054E-6 4.857257349637527E-5 0.0 3.885805879710022E-5 0.0 6 1.1657417639130065E-4 4.857257349637527E-5 0.0 3.885805879710022E-5 0.0 7 1.1657417639130065E-4 4.857257349637527E-5 0.0 6.800160289492538E-5 0.0 8 1.1657417639130065E-4 5.828708819565033E-5 0.0 6.800160289492538E-5 0.0 9 1.1657417639130065E-4 8.74306322934755E-5 0.0 7.771611759420044E-5 0.0 10-11 1.262886910905757E-4 8.74306322934755E-5 0.0 9.714514699275055E-5 0.0 12-13 1.3600320578985076E-4 8.74306322934755E-5 0.0 1.068596616920256E-4 0.0 14-15 1.5543223518840087E-4 1.3600320578985076E-4 0.0 1.068596616920256E-4 1.942902939855011E-5 16-17 2.4286286748187636E-4 1.3600320578985076E-4 0.0 1.1657417639130065E-4 1.942902939855011E-5 18-19 2.4286286748187636E-4 1.651467498876759E-4 0.0 1.74861264586951E-4 2.9143544097825163E-5 20-21 2.5257738218115145E-4 1.9914755133513862E-4 0.0 2.0400480868477613E-4 3.400080144746269E-5 22-23 2.720064115797015E-4 2.2829109543296376E-4 0.0 2.1857658073368873E-4 3.885805879710022E-5 24-25 2.865781836286141E-4 2.962926983278892E-4 0.0 2.4286286748187636E-4 4.371531614673775E-5 26-27 2.914354409782516E-4 3.1572172772643926E-4 0.0 2.67149154230064E-4 4.857257349637527E-5 28-29 2.914354409782516E-4 3.2057898507607677E-4 0.0 5.002975070126653E-4 4.857257349637527E-5 30-31 2.914354409782516E-4 3.934378453206397E-4 0.0 0.001418319146094158 4.857257349637527E-5 32-33 3.060072130271642E-4 4.0800961736955227E-4 0.0 0.003283505968354968 5.828708819565033E-5 34-35 3.3029349977535186E-4 4.711539629148402E-4 0.0 0.0058432805916139455 5.828708819565033E-5 36-37 3.3029349977535186E-4 5.24583793760853E-4 0.0 0.009510509890590279 5.828708819565033E-5 38-39 3.3029349977535186E-4 5.44012823159403E-4 0.0 0.01535864773955386 6.314434554528785E-5 40-41 3.59437043873177E-4 5.731563672572282E-4 0.0 0.02144964845599932 6.800160289492538E-5 42-43 3.8372333062136464E-4 6.071571687046909E-4 0.0 0.027749511238479192 6.800160289492538E-5 44-45 3.9829510267027724E-4 7.140168303967165E-4 0.0 0.035015968233536934 7.28588602445629E-5 46-47 4.1772413206882735E-4 8.160192347391045E-4 0.0 0.042870153367900815 7.771611759420044E-5 48-49 4.1772413206882735E-4 8.160192347391045E-4 0.0 0.05088948525215237 9.714514699275054E-5 50-51 4.274386467681024E-4 9.083071243822175E-4 0.0 0.058272516423601414 1.0200240434238807E-4 52-53 4.3715316146737747E-4 9.131643817318551E-4 0.0 0.06558754599215552 1.1171691904166312E-4 54-55 4.5658219086592753E-4 9.228788964311301E-4 0.0 0.072509137715389 1.2143143374093818E-4 56-57 4.662967055652026E-4 9.423079258296803E-4 0.0 0.0775169700428653 1.262886910905757E-4 58-59 4.7601122026447764E-4 9.617369552282304E-4 0.0 0.08214107903972023 1.262886910905757E-4 60-61 4.8572573496375273E-4 9.95737756675693E-4 0.0 0.08688661947031609 1.262886910905757E-4 62-63 5.197265364112154E-4 0.0010540248448713434 0.0 0.09139415429077971 1.3600320578985076E-4 64-65 5.44012823159403E-4 0.0011463127345144564 0.0 0.09536253354543356 1.3600320578985076E-4 66-67 5.53727337858678E-4 0.0011754562786122815 0.0 0.09943291520442982 1.3600320578985076E-4 68-69 5.53727337858678E-4 0.0011997425653604691 0.0 0.10392587825284452 1.3600320578985076E-4 70-71 5.731563672572282E-4 0.001224028852108657 0.0 0.10800111716919042 1.3600320578985076E-4 72-73 5.974426540054159E-4 0.0012580296535561195 0.0 0.1111437626744059 1.457177204891258E-4 74-75 6.022999113550534E-4 0.0013308885138006825 0.0 0.11356753409187502 1.457177204891258E-4 76-77 6.022999113550534E-4 0.00137460382994742 0.0 0.11588930310500176 1.457177204891258E-4 78-79 6.022999113550534E-4 0.0013794610872970576 0.0 0.11737562385399085 1.457177204891258E-4 80-81 6.071571687046909E-4 0.0013891756019963329 0.0 0.11795363747859772 1.457177204891258E-4 82-83 6.120144260543285E-4 0.0013891756019963329 0.0 0.11825478743427523 1.457177204891258E-4 84-85 6.16871683403966E-4 0.0014134618887445204 0.0 0.11837621886801618 1.457177204891258E-4 86-87 6.411579701521535E-4 0.001457177204891258 0.0 0.1184830785297082 1.457177204891258E-4 88 6.508724848514287E-4 0.0014960352636883584 0.0 0.11848793578705784 1.457177204891258E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14425 0.0 53.172966 1 GTATCAA 27525 0.0 39.127453 1 CTTATAC 8585 0.0 34.317314 1 TCAACGC 33945 0.0 31.148314 4 ATCAACG 34575 0.0 30.55609 3 CAACGCA 34975 0.0 30.243198 5 TATCAAC 35270 0.0 30.160648 2 AACGCAG 36055 0.0 29.406666 6 TATACAC 11975 0.0 27.449696 3 ACGCAGA 41360 0.0 25.633102 7 CGCAGAG 41930 0.0 25.264189 8 TTATACA 12830 0.0 24.192472 2 GTGGTAT 6785 0.0 22.81037 1 TGGTATC 6410 0.0 22.481964 2 GCAGAGT 48465 0.0 21.83119 9 TACACAT 16050 0.0 20.905394 5 GAGTACT 29730 0.0 20.231865 12-13 ACACATC 14760 0.0 19.98735 6 ACATCTC 15175 0.0 19.804516 8 GTACATG 31735 0.0 19.776293 1 >>END_MODULE