##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140364_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10510204 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.419177115877105 34.0 31.0 34.0 31.0 34.0 2 32.50791916122655 34.0 31.0 34.0 31.0 34.0 3 32.562067491744216 34.0 31.0 34.0 31.0 34.0 4 36.07734502584346 37.0 35.0 37.0 35.0 37.0 5 36.12330293493827 37.0 35.0 37.0 35.0 37.0 6 36.117210094114256 37.0 36.0 37.0 35.0 37.0 7 36.085189973477206 37.0 36.0 37.0 35.0 37.0 8 36.07337859474469 37.0 35.0 37.0 35.0 37.0 9 37.82195388405401 39.0 38.0 39.0 35.0 39.0 10-11 37.763147699131245 39.0 37.5 39.0 35.0 39.0 12-13 37.75126805340791 39.0 38.0 39.0 35.0 39.0 14-15 39.111753967858284 40.0 38.5 41.0 36.0 41.0 16-17 39.12478654077504 40.0 38.5 41.0 36.0 41.0 18-19 39.167647459554544 40.0 39.0 41.0 36.0 41.0 20-21 39.193975181908456 40.0 39.0 41.0 36.0 41.0 22-23 39.15627424044594 40.0 39.0 41.0 36.0 41.0 24-25 39.12358973353412 40.0 39.0 41.0 36.0 41.0 26-27 39.071447118856135 40.0 39.0 41.0 36.0 41.0 28-29 39.03729897279428 40.0 39.0 41.0 35.5 41.0 30-31 38.95948304640867 40.0 38.0 41.0 35.0 41.0 32-33 38.862229227639695 40.0 38.0 41.0 35.0 41.0 34-35 38.79405444409534 40.0 38.0 41.0 35.0 41.0 36-37 38.73895966571476 40.0 38.0 41.0 35.0 41.0 38-39 38.69409282917344 40.0 38.0 41.0 35.0 41.0 40-41 38.65484227901232 40.0 38.0 41.0 35.0 41.0 42-43 38.59888688752254 40.0 38.0 41.0 35.0 41.0 44-45 38.56205308933556 40.0 38.0 41.0 34.5 41.0 46-47 38.49228566580876 40.0 38.0 41.0 34.0 41.0 48-49 38.427857397677286 40.0 38.0 41.0 34.0 41.0 50-51 38.344472037829696 40.0 38.0 41.0 34.0 41.0 52-53 38.24286454175561 40.0 37.5 41.0 34.0 41.0 54-55 38.13438283433578 40.0 37.0 41.0 33.5 41.0 56-57 38.000813608567555 40.0 37.0 41.0 33.0 41.0 58-59 37.860392546379 40.0 36.5 41.0 33.0 41.0 60-61 37.685102823817445 39.0 36.0 41.0 33.0 41.0 62-63 37.47895783336517 39.0 35.5 41.0 33.0 41.0 64-65 37.253634137744285 39.0 35.0 40.5 33.0 41.0 66-67 36.983144346715974 38.0 35.0 40.0 32.0 41.0 68-69 36.71824942649134 37.5 35.0 40.0 32.0 41.0 70-71 36.41117400105142 37.0 35.0 39.5 32.0 41.0 72-73 36.086037706217056 36.5 35.0 39.0 31.5 41.0 74-75 35.76390917512081 36.0 35.0 39.0 31.0 40.5 76-77 35.43352512991024 36.0 34.0 38.5 31.0 40.0 78-79 35.132754105067036 35.0 34.0 37.0 31.0 39.0 80-81 34.84270479030425 35.0 34.0 37.0 31.0 39.0 82-83 34.56032413933829 35.0 34.0 36.5 31.0 39.0 84-85 34.32293683156591 35.0 34.0 36.0 31.0 37.0 86-87 34.119190499542285 35.0 34.0 36.0 31.0 37.0 88-89 33.97117738575514 35.0 34.0 35.0 31.0 37.0 90-91 33.86926093065328 35.0 34.0 35.0 31.0 36.0 92-93 33.78117486476353 35.0 34.0 35.0 31.0 36.0 94-95 33.68805905902968 35.0 34.0 35.0 31.0 36.0 96-97 33.690226737335465 35.0 34.0 35.0 31.0 36.0 98-99 33.765338593658726 35.0 34.0 35.0 31.0 35.0 100 32.99028050015505 34.0 32.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 0.0 18 3.0 19 27.0 20 86.0 21 321.0 22 1009.0 23 3115.0 24 7927.0 25 16989.0 26 31236.0 27 51315.0 28 76365.0 29 107417.0 30 142393.0 31 186056.0 32 240682.0 33 315776.0 34 444815.0 35 655623.0 36 1116447.0 37 2259710.0 38 3150159.0 39 1650003.0 40 52729.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.95713080355053 20.45070676078219 14.220313896856807 24.37184853881047 2 14.212763706224912 21.10234975273698 42.01047817060478 22.674408370433333 3 17.724365768732937 26.523909526399297 30.63448625735523 25.11723844751253 4 12.273543795550989 18.595954406195887 38.932427546573805 30.19807425167932 5 13.197875600433468 37.8093701827236 35.47469818117531 13.518056035667625 6 29.189734587913613 38.20910783569677 19.079914409226507 13.521243167163105 7 26.047044974794957 33.04023387570815 23.10745240004042 17.80526874945648 8 24.122633585418512 36.738497178551434 21.388557253503357 17.750311982526696 9 25.373551265037293 17.16006654104906 21.355522690139985 36.11085950377367 10-11 23.922932418818892 27.00037030679899 28.9772729435128 20.099424330869315 12-13 24.953411941385724 24.42896446158419 29.007700516564665 21.60992308046542 14-15 22.117410851397366 25.785617481830037 26.76437108166502 25.332600585107578 16-17 21.59735909978531 28.906865175975653 27.380753028200022 22.11502269603901 18-19 21.57968104139558 27.861452546496718 29.27872760604837 21.28013880605933 20-21 22.41712358716452 27.001704748647697 29.181778214641525 21.39939344954626 22-23 22.08261635507404 27.091450859481775 29.030231443317977 21.795701342126208 24-25 21.880134416681717 27.25339867120624 29.173788604281086 21.692678307830953 26-27 21.894722911371105 27.42537019454032 29.092864791964846 21.587042102123732 28-29 21.753498034413425 27.259107582970334 29.21415355700082 21.773240825615424 30-31 22.108623833505938 27.373275858245734 28.911322440611087 21.606777867637245 32-33 22.157806178701755 27.242972625794344 28.90878661471833 21.690434580785574 34-35 22.041275582969902 27.284372427538216 28.939611150313954 21.73474083917793 36-37 21.94351735969043 27.388830006713704 28.887658248486286 21.77999438510958 38-39 21.79701468897871 27.314997547270586 29.020479491900186 21.867508271850518 40-41 22.133438715904727 27.158943984391794 28.904187724544755 21.803429575158724 42-43 22.170219839375697 27.187737280769497 28.678422284163673 21.963620595691133 44-45 22.069789339999033 27.508574937271526 28.44454854103341 21.97708718169603 46-47 22.354159141976936 27.309322904384114 27.99822376502035 22.3382941886186 48-49 22.204146359491926 27.44068169038104 28.008247410196645 22.346924539930388 50-51 22.118127081011913 27.587919772738427 28.01708989106695 22.276863255182707 52-53 22.312776699494783 27.513206582458622 28.058287645158902 22.11572907288769 54-55 22.261678338819134 27.415208383258634 27.945460250443375 22.37765302747885 56-57 22.41838575665988 27.674678837771605 27.689765049042155 22.21717035652636 58-59 22.162029633103337 27.884742163290944 27.963248685187587 21.989979518418128 60-61 22.375934603580685 28.02951813835786 27.633495883360986 21.961051374700467 62-63 22.18363179817038 28.219019537689128 27.56815087439789 22.029197789742604 64-65 22.16050191909101 28.126699828593775 27.563354972750005 22.149443279565205 66-67 22.241488261787485 28.081988065406865 27.472169991150096 22.20435368165555 68-69 22.27176233985159 27.921514611493635 27.5875445195041 22.219178529150675 70-71 22.30380120567512 27.521199174770906 27.719697584839743 22.45530203471423 72-73 22.35320043737909 27.57074046036953 27.669251689236553 22.406807413014832 74-75 22.20149645236951 27.73115736506145 27.622811828832493 22.444534353736554 76-77 22.3048786745687 27.69125988498787 27.584732075681494 22.41912936476194 78-79 22.315647099255546 27.69459159871174 27.535031591267717 22.454729710764994 80-81 22.328448795837403 27.679838188695133 27.50819544056922 22.483517574898244 82-83 22.360479516820593 27.670580151557537 27.6339072192455 22.33503311237637 84-85 22.490090889296283 27.604103126737666 27.586860852411004 22.318945131555047 86-87 22.26436978327918 27.6982326908624 27.666578013567282 22.37081951229114 88-89 22.35120773884786 27.69557045123055 27.579686737806732 22.37353507211486 90-91 22.391140152437494 27.69242037835668 27.64391106507198 22.272528404133844 92-93 22.40402525252651 27.64748361403717 27.634606397396254 22.313884736040066 94-95 22.31114515068788 27.734865669281 27.65576653912547 22.298222640905653 96-97 22.34029712928068 27.852601682675726 27.75750981286332 22.049591375180274 98-99 23.40418563018234 29.77226042452994 27.89559257271993 18.927961372567793 100 22.4461763700333 30.795378114420856 21.520728283569486 25.237717231976358 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1277.0 1 1198.0 2 2347.5 3 3697.0 4 4861.5 5 8597.0 6 11811.5 7 13627.5 8 14475.5 9 13320.0 10 10889.5 11 8461.0 12 8732.0 13 12582.5 14 23193.0 15 38733.0 16 52344.5 17 61262.0 18 63865.5 19 60480.0 20 53764.0 21 46388.0 22 41928.0 23 43568.5 24 50953.5 25 64724.0 26 84832.5 27 106703.0 28 127369.0 29 150334.5 30 173045.5 31 195580.5 32 222766.0 33 249819.5 34 275377.0 35 299264.5 36 324952.5 37 347707.0 38 361805.0 39 375283.5 40 391696.0 41 404019.0 42 411612.0 43 420890.0 44 440420.5 45 459748.0 46 456889.0 47 448086.0 48 441834.5 49 432340.5 50 423003.0 51 408961.5 52 388310.5 53 364787.0 54 341615.5 55 317447.0 56 292349.0 57 265337.0 58 236246.0 59 206580.0 60 173719.0 61 140759.0 62 111456.0 63 86279.0 64 65184.5 65 48404.5 66 36298.5 67 28076.0 68 21695.5 69 16151.5 70 11939.5 71 8712.0 72 6287.5 73 4406.0 74 3043.5 75 2110.5 76 1423.5 77 938.0 78 659.5 79 473.0 80 331.5 81 219.5 82 150.0 83 100.0 84 67.5 85 50.5 86 42.0 87 35.0 88 25.0 89 15.0 90 8.5 91 6.0 92 5.5 93 4.0 94 3.0 95 2.5 96 2.0 97 2.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.005185436933479122 3 0.0 4 3.805825272278254E-5 5 0.004804854406251296 6 0.00627961169925912 7 5.708737908417382E-5 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.010840875506821638 26-27 0.0022754685025413125 28-29 0.0 30-31 4.291871895635409E-4 32-33 0.0028389921520506844 34-35 6.471183245790207E-4 36-37 0.002988807421560169 38-39 6.776828204307042E-5 40-41 4.384983633292199E-5 42-43 4.9062963629674125E-6 44-45 0.0 46-47 0.003068929557370389 48-49 0.0 50-51 0.0015463884225561302 52-53 5.124242380764004E-6 54-55 4.5945692707463517E-4 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0016056611451127196 64-65 0.001054730163431515 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0026914911870485445 74-75 2.205934007730724E-4 76-77 0.0030650849382411072 78-79 0.0 80-81 0.0 82-83 7.586228959682191E-4 84-85 4.6327632342009115E-4 86-87 0.0015542054970508201 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0014568356621261324 96-97 8.749919577945055E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 269.0 20-21 974.0 22-23 1893.0 24-25 2764.0 26-27 4891.0 28-29 9309.0 30-31 22151.0 32-33 28631.0 34-35 37766.0 36-37 55539.0 38-39 66885.0 40-41 69203.0 42-43 81900.0 44-45 99495.0 46-47 97051.0 48-49 83389.0 50-51 73114.0 52-53 70894.0 54-55 76634.0 56-57 78153.0 58-59 78919.0 60-61 77797.0 62-63 79470.0 64-65 90599.0 66-67 96643.0 68-69 97557.0 70-71 91715.0 72-73 77550.0 74-75 78496.0 76-77 83739.0 78-79 86025.0 80-81 87546.0 82-83 83926.0 84-85 85069.0 86-87 89745.0 88-89 95685.0 90-91 100951.0 92-93 109082.0 94-95 132733.0 96-97 352313.0 98-99 676167.0 100-101 6797572.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.26452938250381 #Duplication Level Percentage of deduplicated Percentage of total 1 88.28634929751897 72.62834975859744 2 7.789942140909453 12.816718482777006 3 2.114296124623094 5.217947270021113 4 0.7909534960792001 2.602696684736059 5 0.3810552725497339 1.567366633251279 6 0.20486895735627778 1.011206901719906 7 0.12803742002062646 0.7373056670942765 8 0.07879313714929415 0.5185504276926209 9 0.051581777596845846 0.3819015592845752 >10 0.16952416161184256 2.1054340445186273 >50 0.003541458107979721 0.19610892185544623 >100 9.523828959804295E-4 0.129865450365925 >500 6.262533392643534E-5 0.034156428007904194 >1k 4.174824678115747E-5 0.05239177007781647 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 9.514563180695637E-6 0.0 9.514563180695637E-6 0.0 3 0.0 9.514563180695637E-6 0.0 9.514563180695637E-6 0.0 4 0.0 2.854368954208691E-5 0.0 9.514563180695637E-6 0.0 5 0.0 2.854368954208691E-5 0.0 9.514563180695637E-6 0.0 6 0.0 2.854368954208691E-5 0.0 9.514563180695637E-6 0.0 7 0.0 4.757281590347818E-5 0.0 1.9029126361391274E-5 0.0 8 0.0 5.708737908417382E-5 0.0 1.9029126361391274E-5 0.0 9 0.0 9.514563180695636E-5 0.0 1.9029126361391274E-5 9.514563180695637E-6 10-11 0.0 9.514563180695636E-5 0.0 9.514563180695637E-5 9.514563180695637E-6 12-13 0.0 9.514563180695636E-5 0.0 1.0941747657799983E-4 9.514563180695637E-6 14-15 0.0 1.7126213725252146E-4 0.0 1.284466029393911E-4 1.9029126361391274E-5 16-17 0.0 1.7126213725252146E-4 0.0 1.332038845297389E-4 1.9029126361391274E-5 18-19 0.0 1.9504854520426056E-4 0.0 1.332038845297389E-4 1.9029126361391274E-5 20-21 0.0 2.2834951633669527E-4 0.0 1.4271844771043455E-4 1.9029126361391274E-5 22-23 0.0 2.568932058787822E-4 0.0 1.6174757407182584E-4 2.3786407951739093E-5 24-25 0.0 2.806796138305213E-4 0.0 1.9029126361391275E-4 2.854368954208691E-5 26-27 0.0 2.949514586015647E-4 0.0 2.473786426980865E-4 2.854368954208691E-5 28-29 0.0 2.949514586015647E-4 0.0 4.900000038058253E-4 2.854368954208691E-5 30-31 0.0 3.8058252722782544E-4 0.0 0.0011227184553220851 2.854368954208691E-5 32-33 0.0 3.8058252722782544E-4 0.0 0.0028163107014859082 2.854368954208691E-5 34-35 0.0 4.2815534313130364E-4 0.0 0.0047953398430706 3.805825272278255E-5 36-37 0.0 4.8048544062512965E-4 0.0 0.008077864140410595 3.805825272278255E-5 38-39 0.0 4.8524272221547746E-4 0.0 0.013134854470950325 3.805825272278255E-5 40-41 0.0 5.423301012996512E-4 0.0 0.018115728296044492 3.805825272278255E-5 42-43 0.0 5.470873828899991E-4 0.0 0.02333446620065605 3.805825272278255E-5 44-45 0.0 5.899029172031294E-4 0.0 0.029162136148832125 3.805825272278255E-5 46-47 0.0 6.184466067452164E-4 0.0 0.03503262163132133 4.2815534313130364E-5 48-49 0.0 6.184466067452164E-4 0.0 0.0412075731355928 4.757281590347818E-5 50-51 0.0 6.755339858293902E-4 0.0 0.04793436930434461 4.757281590347818E-5 52-53 0.0 6.850485490100858E-4 0.0 0.053861942165918 5.2330097493825996E-5 54-55 0.0 6.850485490100858E-4 0.0 0.05938038881072147 5.708737908417382E-5 56-57 0.0 7.135922385521727E-4 0.0 0.0632052432093611 5.708737908417382E-5 58-59 0.0 7.135922385521727E-4 0.0 0.06722038887161466 6.184466067452163E-5 60-61 9.514563180695637E-6 7.32621364913564E-4 0.0 0.07106902967820605 6.660194226486945E-5 62-63 9.514563180695637E-6 7.32621364913564E-4 0.0 0.07495097145592988 6.660194226486945E-5 64-65 9.514563180695637E-6 7.897087439977378E-4 0.0 0.07867592294117222 7.135922385521727E-5 66-67 9.514563180695637E-6 7.897087439977378E-4 0.0 0.08260068025320917 7.61165054455651E-5 68-69 9.514563180695637E-6 8.372815599012159E-4 0.0 0.0864445637782102 7.61165054455651E-5 70-71 9.514563180695637E-6 8.658252494433029E-4 0.0 0.0899554375918869 7.61165054455651E-5 72-73 9.514563180695637E-6 8.658252494433029E-4 0.0 0.09259097159293958 1.1417475816834764E-4 74-75 9.514563180695637E-6 8.991262205757377E-4 0.0 0.09480310753245132 1.1417475816834764E-4 76-77 9.514563180695637E-6 9.324271917081723E-4 0.0 0.09699145706401131 1.1417475816834764E-4 78-79 9.514563180695637E-6 9.324271917081723E-4 0.0 0.09841864154111565 1.1417475816834764E-4 80-81 9.514563180695637E-6 9.324271917081723E-4 0.0 0.09891339882651183 1.1417475816834764E-4 82-83 9.514563180695637E-6 9.41941754888868E-4 0.0 0.09916553475080028 1.1417475816834764E-4 84-85 9.514563180695637E-6 9.609708812502593E-4 0.0 0.09925592310101689 1.1417475816834764E-4 86-87 9.514563180695637E-6 9.704854444309549E-4 0.0 0.09929873863533001 1.2368932134904328E-4 88 9.514563180695637E-6 9.895145707923463E-4 0.0 0.09931301048010105 1.332038845297389E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13965 0.0 50.2645 1 GTATCAA 25475 0.0 39.6353 1 CTTATAC 8645 0.0 34.27093 1 TCAACGC 31195 0.0 31.956774 4 ATCAACG 31285 0.0 31.89205 3 TATCAAC 32365 0.0 31.039738 2 CAACGCA 32155 0.0 31.00269 5 AACGCAG 32880 0.0 30.304697 6 TATACAC 12060 0.0 27.036001 3 ACGCAGA 38010 0.0 26.234913 7 CGCAGAG 38795 0.0 25.704062 8 TTATACA 13490 0.0 23.287672 2 GCAGAGT 45470 0.0 21.968143 9 ACACATC 14175 0.0 21.529623 6 TACACAT 15905 0.0 20.901543 5 ACATCTC 14480 0.0 20.898073 8 GTACATG 31890 0.0 20.78336 1 TACATGG 31180 0.0 20.601309 2 GTGGTAT 6525 0.0 19.767136 1 GAGTACT 27515 0.0 19.752705 12-13 >>END_MODULE