##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140363_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8086609 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.244140900097925 33.0 31.0 34.0 30.0 34.0 2 32.23732914500998 33.0 31.0 34.0 30.0 34.0 3 32.312432813309016 34.0 31.0 34.0 30.0 34.0 4 35.98430442228628 37.0 35.0 37.0 35.0 37.0 5 36.0434043490912 37.0 35.0 37.0 35.0 37.0 6 36.066017288581655 37.0 35.0 37.0 35.0 37.0 7 36.033107202289614 37.0 35.0 37.0 35.0 37.0 8 36.01592855546744 37.0 35.0 37.0 35.0 37.0 9 37.77158621122896 39.0 38.0 39.0 35.0 39.0 10-11 37.71078210903977 39.0 37.0 39.0 35.0 39.0 12-13 37.70446741025812 39.0 37.0 39.0 35.0 39.0 14-15 39.02784356211609 40.0 38.0 41.0 36.0 41.0 16-17 39.05158484848222 40.0 38.0 41.0 36.0 41.0 18-19 39.10960818063542 40.0 38.5 41.0 36.0 41.0 20-21 39.14471150625779 40.0 39.0 41.0 36.0 41.0 22-23 39.10978541438281 40.0 39.0 41.0 36.0 41.0 24-25 39.078343981034855 40.0 39.0 41.0 36.0 41.0 26-27 39.02602540878345 40.0 39.0 41.0 35.5 41.0 28-29 38.99031336910495 40.0 38.0 41.0 35.0 41.0 30-31 38.91593981577286 40.0 38.0 41.0 35.0 41.0 32-33 38.81978240041056 40.0 38.0 41.0 35.0 41.0 34-35 38.75186665645713 40.0 38.0 41.0 35.0 41.0 36-37 38.70633049170292 40.0 38.0 41.0 35.0 41.0 38-39 38.669623947629645 40.0 38.0 41.0 35.0 41.0 40-41 38.61500209513546 40.0 38.0 41.0 35.0 41.0 42-43 38.548735284522536 40.0 38.0 41.0 34.0 41.0 44-45 38.50565277894667 40.0 38.0 41.0 34.0 41.0 46-47 38.43184708917116 40.0 38.0 41.0 34.0 41.0 48-49 38.362402796309425 40.0 38.0 41.0 34.0 41.0 50-51 38.288995207720056 40.0 38.0 41.0 34.0 41.0 52-53 38.180612320306345 40.0 37.0 41.0 33.5 41.0 54-55 38.06479258372562 40.0 37.0 41.0 33.0 41.0 56-57 37.923218079745304 40.0 37.0 41.0 33.0 41.0 58-59 37.77404642779146 39.5 36.0 41.0 33.0 41.0 60-61 37.59831173138758 39.0 36.0 41.0 33.0 41.0 62-63 37.38359649320881 39.0 35.5 41.0 33.0 41.0 64-65 37.15151002234656 39.0 35.0 40.0 32.0 41.0 66-67 36.86988000135943 38.0 35.0 40.0 32.0 41.0 68-69 36.59496923207092 37.0 35.0 40.0 32.0 41.0 70-71 36.28400587409753 37.0 35.0 39.5 31.5 41.0 72-73 35.95857284763136 36.5 35.0 39.0 31.0 41.0 74-75 35.63679026736315 36.0 34.5 39.0 31.0 40.0 76-77 35.309619648392726 35.5 34.0 37.5 31.0 40.0 78-79 35.01497840461179 35.0 34.0 37.0 31.0 39.0 80-81 34.732997585558124 35.0 34.0 37.0 31.0 39.0 82-83 34.45500752583088 35.0 34.0 36.0 31.0 38.5 84-85 34.22933701810818 35.0 34.0 36.0 31.0 37.0 86-87 34.03616017846721 35.0 34.0 35.5 30.0 37.0 88-89 33.897007160225684 35.0 34.0 35.0 30.0 36.5 90-91 33.80403635466445 35.0 34.0 35.0 30.0 36.0 92-93 33.723084191669415 35.0 34.0 35.0 30.0 36.0 94-95 33.6348603776891 35.0 34.0 35.0 30.0 36.0 96-97 33.640009306894996 35.0 34.0 35.0 30.5 35.5 98-99 33.72355124721645 35.0 34.0 35.0 31.0 35.0 100 32.94062413898529 34.0 32.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 3.0 19 19.0 20 63.0 21 231.0 22 835.0 23 2610.0 24 6254.0 25 13461.0 26 25288.0 27 41233.0 28 61968.0 29 86554.0 30 114074.0 31 148158.0 32 192029.0 33 252401.0 34 356174.0 35 525525.0 36 894088.0 37 1761617.0 38 2371862.0 39 1197472.0 40 34689.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.54371752115132 20.070266783023637 14.300221514357872 24.08579418146716 2 14.417532303390935 20.9705288599714 41.68742644829157 22.924512388346095 3 18.007795356496153 26.35855152635672 30.27043844954047 25.36321466760666 4 12.463411720566082 18.210223176447574 38.7094412662123 30.616923836774045 5 13.406786162929349 37.82302562439728 35.032569990791806 13.737618221881561 6 29.719588051117913 37.82537657152651 18.823073154094 13.631962223261574 7 26.518151986593143 32.90272015163836 22.908356631111587 17.67077123065691 8 24.58041436156985 36.538183062888294 20.97336473174355 17.908037843798308 9 25.813341537843616 17.05350165934819 21.19945455505515 35.93370224775305 10-11 24.291962180933936 26.911811860818297 28.514498475195225 20.28172748305254 12-13 25.225165455631647 24.480527004582513 28.6864432297889 21.607864309996934 14-15 22.41909433237096 25.692975881485058 26.598819109468508 25.289110676675474 16-17 21.69329566942089 28.767027069071844 27.276216767745293 22.263460493761972 18-19 21.73011580008382 27.743674759098653 29.221760320055047 21.304449120762488 20-21 22.69704403951504 26.815937151491216 29.165799967797142 21.32121884119661 22-23 22.35028550176439 26.789474003180363 28.984993517198443 21.875246977856808 24-25 22.08312056097053 26.94973355384334 29.105960172725283 21.861185712460845 26-27 21.982151349340615 27.117038386713833 29.035699652528347 21.8651106114172 28-29 21.92289527381967 27.041280849700033 29.09579895150687 21.94002492497343 30-31 22.2908133540113 26.94563033772074 28.957132481440688 21.806423826827274 32-33 22.058277329386478 27.11552554372179 28.93382972293807 21.892367403953664 34-35 22.194186178722315 27.17545166302956 28.873919339974545 21.756442818273577 36-37 22.225039663309527 26.994028277090948 28.820493941249463 21.960438118350055 38-39 22.006590757027396 27.191991154871705 28.879393026946055 21.922025061154844 40-41 22.291800166426263 27.02300944285392 28.766412421588416 21.918777969131398 42-43 22.217662917384118 27.068733437899073 28.549616954478115 22.163986690238698 44-45 22.23293974960846 27.256914546627954 28.340027649285698 22.170118054477893 46-47 22.407801150318345 27.225534877172493 27.960883440317456 22.405780532191706 48-49 22.30420560467749 27.37665997589056 27.90953477394456 22.409599645487386 50-51 22.30912226983202 27.532329145825397 27.767453224150955 22.39109536019163 52-53 22.473058672536347 27.45446312258778 27.692312013606042 22.380166191269833 54-55 22.451054090063437 27.358604820968367 27.731500379227235 22.458840709740954 56-57 22.3930142458505 27.523988650783366 27.65357722504906 22.429419878317074 58-59 22.337662355441438 27.537560995376648 27.763759313927615 22.361017335254303 60-61 22.44637947603381 27.604051936727096 27.65595028196513 22.293618305273963 62-63 22.381854420381828 27.653765613564218 27.65299996554584 22.311380000508112 64-65 22.34202350174746 27.63008512273749 27.561612988986905 22.466278386528142 66-67 22.45281483667283 27.698037332025816 27.398308713678727 22.45083911762263 68-69 22.393844582630575 27.594747389377154 27.50825795409741 22.503150073894858 70-71 22.406997279975855 27.293860687044802 27.667031342885352 22.63211069009399 72-73 22.463475679768045 27.36556220632786 27.49196936541873 22.678992748485367 74-75 22.34062327848131 27.531272587757872 27.47800607194198 22.65009806181884 76-77 22.507298979981634 27.47199190676287 27.401871575915322 22.61883753734017 78-79 22.483321759851908 27.469328777004915 27.35792840371897 22.689421059424213 80-81 22.504615359022566 27.512159859476824 27.294289960615853 22.68893482088475 82-83 22.525923386489378 27.508481225806392 27.435799190727746 22.52979619697649 84-85 22.575091945857636 27.4909165084089 27.393145921578622 22.540845624154834 86-87 22.409099543384407 27.526669036745393 27.491515380581976 22.572716039288224 88-89 22.532728228810015 27.542854675229915 27.399923672417398 22.52449342354267 90-91 22.55509097667826 27.571697647126552 27.43813144139393 22.435079934801255 92-93 22.5934471165147 27.523367078220733 27.45277711586791 22.430408689396657 94-95 22.433141359905743 27.613778349115886 27.49413861974887 22.4589416712295 96-97 22.500699438143094 27.694750486932623 27.57094909995598 22.233600974968304 98-99 23.591035085592235 29.612057981578378 27.717832036085298 19.079074896744093 100 22.685721529607626 30.53790797398328 21.423240939185522 25.353129557223575 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1512.0 1 1344.0 2 2146.5 3 3192.0 4 3974.5 5 6658.5 6 9117.5 7 10785.5 8 11886.0 9 11502.5 10 9801.0 11 7698.0 12 7713.5 13 10441.5 14 18598.0 15 30707.0 16 41148.5 17 47944.5 18 49871.5 19 46885.0 20 41084.5 21 34925.5 22 31000.5 23 31696.5 24 36887.5 25 46179.0 26 59454.0 27 74854.5 28 90117.5 29 107188.0 30 125570.0 31 144020.0 32 164638.5 33 184678.5 34 204226.5 35 223653.0 36 245243.5 37 265527.0 38 277679.5 39 287383.5 40 299458.0 41 307887.0 42 312533.5 43 320724.5 44 328398.5 45 333834.0 46 337540.5 47 338338.5 48 338085.0 49 334298.0 50 326582.0 51 317046.0 52 305005.0 53 290135.5 54 274206.5 55 257011.0 56 238445.0 57 217964.5 58 196052.0 59 173188.5 60 147492.5 61 121345.0 62 96568.0 63 74599.5 64 56698.0 65 42401.5 66 31573.0 67 24186.0 68 18581.5 69 13566.5 70 9807.5 71 7186.5 72 5065.5 73 3474.0 74 2383.5 75 1576.5 76 1046.5 77 684.5 78 481.5 79 365.0 80 276.0 81 212.0 82 166.5 83 121.5 84 79.0 85 49.5 86 33.0 87 21.5 88 14.0 89 10.5 90 8.5 91 6.0 92 3.5 93 3.0 94 2.0 95 1.0 96 1.0 97 0.5 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.005700782614814195 3 0.0 4 3.709836842612274E-5 5 0.0040931866496822095 6 0.004488902579560852 7 1.236612280870758E-5 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.011046961896826447 26-27 0.002338780092303854 28-29 0.0 30-31 3.9051521602247977E-4 32-33 0.003069665054181142 34-35 6.233579194008183E-4 36-37 0.0013147885538265043 38-39 8.189460265431747E-5 40-41 5.709520168118724E-5 42-43 6.391548429944891E-6 44-45 0.0 46-47 0.0020987915523248937 48-49 0.0 50-51 6.107943832410768E-4 52-53 6.687723186042027E-6 54-55 7.409407698010863E-5 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0010510148697026936 64-65 5.193636307616553E-4 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0026874272974444532 74-75 3.9674212995861543E-4 76-77 0.003039913470716662 78-79 0.0 80-81 0.0 82-83 9.548258157096039E-4 84-85 4.011717919449024E-4 86-87 0.0018005207012334423 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0013268555481031413 96-97 9.02492684795405E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 223.0 20-21 798.0 22-23 1500.0 24-25 2197.0 26-27 3793.0 28-29 7342.0 30-31 18883.0 32-33 23657.0 34-35 31461.0 36-37 46476.0 38-39 54413.0 40-41 57467.0 42-43 66979.0 44-45 80112.0 46-47 78116.0 48-49 67033.0 50-51 56925.0 52-53 52457.0 54-55 56239.0 56-57 60389.0 58-59 61852.0 60-61 60078.0 62-63 58994.0 64-65 62388.0 66-67 65275.0 68-69 66507.0 70-71 64726.0 72-73 59927.0 74-75 60988.0 76-77 64016.0 78-79 65994.0 80-81 67212.0 82-83 65024.0 84-85 65505.0 86-87 68799.0 88-89 73106.0 90-91 77244.0 92-93 83888.0 94-95 102935.0 96-97 275503.0 98-99 520167.0 100-101 5230021.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.52306302195825 #Duplication Level Percentage of deduplicated Percentage of total 1 90.57332105629547 78.36681165861911 2 6.729153602160724 11.644539624083794 3 1.5736108777459175 4.084608994417471 4 0.5498415214735786 1.902958904581914 5 0.22691493221876374 0.9816687490493741 6 0.11669868938877202 0.6058276833938792 7 0.06731513101689161 0.4077017926314123 8 0.039841326738568016 0.2757754899423641 9 0.029422513871507648 0.22911534197720074 >10 0.0909836659968806 1.2066861802134674 >50 0.002275246410336457 0.13686700210908825 >100 5.559465645373233E-4 0.09554271124356202 >500 2.1830289848876406E-5 0.010785182438420927 >1k 4.365982814801835E-5 0.05111068529896133 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.2366122808707581E-5 0.0 0.0 1.2366122808707581E-5 3 0.0 1.2366122808707581E-5 0.0 0.0 1.2366122808707581E-5 4 0.0 7.419673685224549E-5 0.0 1.2366122808707581E-5 1.2366122808707581E-5 5 0.0 7.419673685224549E-5 0.0 2.4732245617415163E-5 1.2366122808707581E-5 6 2.4732245617415163E-5 7.419673685224549E-5 0.0 2.4732245617415163E-5 3.709836842612274E-5 7 2.4732245617415163E-5 7.419673685224549E-5 0.0 2.4732245617415163E-5 3.709836842612274E-5 8 3.709836842612274E-5 7.419673685224549E-5 0.0 2.4732245617415163E-5 3.709836842612274E-5 9 3.709836842612274E-5 1.4839347370449097E-4 0.0 3.709836842612274E-5 3.709836842612274E-5 10-11 3.709836842612274E-5 1.4839347370449097E-4 0.0 8.037979825659927E-5 3.709836842612274E-5 12-13 3.709836842612274E-5 1.4839347370449097E-4 0.0 9.892898246966065E-5 3.709836842612274E-5 14-15 3.709836842612274E-5 2.1640714915238267E-4 0.0 1.0511204387401444E-4 4.328142983047653E-5 16-17 4.328142983047653E-5 2.2259021055673646E-4 0.0 1.360273508957834E-4 4.9464491234830326E-5 18-19 4.9464491234830326E-5 2.3495633336544406E-4 0.0 1.854918421306137E-4 5.564755263918412E-5 20-21 4.9464491234830326E-5 2.4732245617415164E-4 0.0 2.3495633336544406E-4 6.80136754478917E-5 22-23 8.656285966095306E-5 2.906038860046281E-4 0.0 2.596885789828592E-4 7.419673685224549E-5 24-25 9.892898246966065E-5 3.215191930263971E-4 0.0 2.8442082460027437E-4 7.419673685224549E-5 26-27 9.892898246966065E-5 3.3388531583510467E-4 0.0 3.709836842612274E-4 7.419673685224549E-5 28-29 9.892898246966065E-5 3.3388531583510467E-4 0.0 6.739536930745632E-4 8.037979825659927E-5 30-31 1.1129510527836823E-4 4.3281429830476534E-4 0.0 0.0020836916932672274 8.656285966095306E-5 32-33 1.1129510527836823E-4 4.451804211134729E-4 0.0 0.005805894658688209 1.1129510527836823E-4 34-35 1.360273508957834E-4 4.946449123483033E-4 0.0 0.009874349062753003 1.2366122808707582E-4 36-37 1.6075959651319855E-4 5.441094035831336E-4 0.0 0.017009601923377277 1.360273508957834E-4 38-39 1.6075959651319855E-4 5.688416492005487E-4 0.0 0.037815603549027785 1.360273508957834E-4 40-41 1.7312571932190612E-4 6.18306140435379E-4 0.0 0.06107009749080239 1.360273508957834E-4 42-43 1.7312571932190612E-4 6.430383860527942E-4 0.0 0.07360934601883187 1.360273508957834E-4 44-45 1.793087807262599E-4 7.172351229050398E-4 0.0 0.08853525624894193 1.4221041230013718E-4 46-47 1.854918421306137E-4 7.543334913311624E-4 0.0 0.10403000812825253 1.6075959651319855E-4 48-49 1.9167490353496752E-4 7.543334913311624E-4 0.0 0.11863439916533618 1.7312571932190612E-4 50-51 2.040410263436751E-4 8.965439036312996E-4 0.0 0.1322927818075537 1.7312571932190612E-4 52-53 2.1022408774802888E-4 9.027269650356533E-4 0.0 0.1770519633136708 2.040410263436751E-4 54-55 2.2877327196109024E-4 9.15093087844361E-4 0.0 0.22975019566297816 2.4113939476979782E-4 56-57 2.4732245617415164E-4 9.274592106530685E-4 0.0 0.27833050911698587 2.4732245617415164E-4 58-59 2.4732245617415164E-4 9.336422720574223E-4 0.0 0.30034220771648534 2.5350551757850545E-4 60-61 2.720547017915668E-4 9.398253334617761E-4 0.0 0.3140315056657247 2.596885789828592E-4 62-63 3.091530702176895E-4 9.645575790791913E-4 0.0 0.3253217757900747 2.9678694740898194E-4 64-65 3.091530702176895E-4 0.0011005849299749746 0.0 0.33147392188740665 2.9678694740898194E-4 66-67 3.091530702176895E-4 0.0011253171755923898 0.0 0.33684700224779013 3.0297000881333576E-4 68-69 3.091530702176895E-4 0.0011871477896359278 0.0 0.34212733668710826 3.215191930263971E-4 70-71 3.091530702176895E-4 0.0011995139124446352 0.0 0.34691302621407816 3.4625143864381225E-4 72-73 3.153361316220433E-4 0.0012180630966576967 0.0 0.3504188220303467 3.709836842612274E-4 74-75 3.215191930263971E-4 0.0012551614650838194 0.0 0.3534547051798844 3.709836842612274E-4 76-77 3.215191930263971E-4 0.001323175140531711 0.0 0.3559897603556695 3.709836842612274E-4 78-79 3.215191930263971E-4 0.0013417243247447726 0.0 0.35775193285591034 3.709836842612274E-4 80-81 3.4625143864381225E-4 0.0013479073861491263 0.0 0.3583393236893239 3.8334980706993503E-4 82-83 3.4625143864381225E-4 0.0013479073861491263 0.0 0.35866084288235034 4.080820526873502E-4 84-85 3.5243450004816606E-4 0.0013726396317665414 0.0 0.3588216024788635 4.080820526873502E-4 86-87 3.586175614525198E-4 0.0014035549387883105 0.0 0.358864883908694 4.2044817549605776E-4 88 3.586175614525198E-4 0.0014839347370449096 0.0 0.358864883908694 4.2044817549605776E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11805 0.0 54.84163 1 GTATCAA 21835 0.0 37.54875 1 TCAACGC 26950 0.0 29.963364 4 ATCAACG 27265 0.0 29.61719 3 CAACGCA 27760 0.0 29.119675 5 TATCAAC 27950 0.0 29.029724 2 AACGCAG 28595 0.0 28.26848 6 GTGGTAT 5120 0.0 26.55042 1 TGGTATC 4840 0.0 25.453297 2 ACGCAGA 32750 0.0 24.693798 7 CGCAGAG 33315 0.0 24.300508 8 GTACATG 28645 0.0 21.488739 1 TACATGG 28140 0.0 21.195047 2 GCAGAGT 38655 0.0 20.88857 9 GAGTACT 22385 0.0 20.369354 12-13 ACATGGG 28830 0.0 20.303541 3 CAGAGTA 37695 0.0 19.257088 10-11 AGAGTAC 35190 0.0 18.467346 10-11 GTACTTT 24815 0.0 18.273235 14-15 CATGGGG 21115 0.0 18.105837 4 >>END_MODULE