##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140359_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9298492 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.49415087951896 34.0 31.0 34.0 31.0 34.0 2 32.48431229493987 34.0 31.0 34.0 31.0 34.0 3 32.57247454748576 34.0 31.0 34.0 31.0 34.0 4 36.09848790535067 37.0 35.0 37.0 35.0 37.0 5 36.17342704601994 37.0 37.0 37.0 35.0 37.0 6 36.15060216215705 37.0 37.0 37.0 35.0 37.0 7 36.136316082220645 37.0 36.0 37.0 35.0 37.0 8 36.13053643537038 37.0 36.0 37.0 35.0 37.0 9 37.874523309801205 39.0 38.0 39.0 35.0 39.0 10-11 37.831054056937404 39.0 38.0 39.0 35.0 39.0 12-13 37.82090832578014 39.0 38.0 39.0 35.0 39.0 14-15 39.195609944064046 40.0 39.0 41.0 36.0 41.0 16-17 39.19509701142938 40.0 39.0 41.0 36.0 41.0 18-19 39.26946724264536 40.0 39.0 41.0 36.0 41.0 20-21 39.293763286800285 40.0 39.0 41.0 36.0 41.0 22-23 39.253466964675894 40.0 39.0 41.0 36.0 41.0 24-25 39.20137928203872 40.0 39.0 41.0 36.0 41.0 26-27 39.15839921988038 40.0 39.0 41.0 36.0 41.0 28-29 39.1418839354263 40.0 39.0 41.0 36.0 41.0 30-31 39.05755869233781 40.0 39.0 41.0 35.5 41.0 32-33 38.93712011746182 40.0 38.0 41.0 35.0 41.0 34-35 38.89299150307209 40.0 38.0 41.0 35.0 41.0 36-37 38.81653400109318 40.0 38.0 41.0 35.0 41.0 38-39 38.74639809035533 40.0 38.0 41.0 35.0 41.0 40-41 38.7494372442348 40.0 38.0 41.0 35.0 41.0 42-43 38.70156352360445 40.0 38.0 41.0 35.0 41.0 44-45 38.634485671035215 40.0 38.0 41.0 35.0 41.0 46-47 38.510498908679914 40.0 38.0 41.0 34.0 41.0 48-49 38.438806654614595 40.0 38.0 41.0 34.0 41.0 50-51 38.37143378460758 40.0 38.0 41.0 34.0 41.0 52-53 38.28027294576879 40.0 38.0 41.0 34.0 41.0 54-55 38.17349324720092 40.0 37.0 41.0 34.0 41.0 56-57 38.037926608189935 40.0 37.0 41.0 34.0 41.0 58-59 37.87097528328211 39.5 36.5 41.0 33.0 41.0 60-61 37.68510346843574 39.0 36.0 41.0 33.0 41.0 62-63 37.475751919398455 39.0 35.5 41.0 33.0 41.0 64-65 37.225969873573916 39.0 35.0 40.5 33.0 41.0 66-67 36.97711153402602 38.0 35.0 40.0 32.0 41.0 68-69 36.68479296563932 37.5 35.0 40.0 32.0 41.0 70-71 36.403596713844195 37.0 35.0 39.5 32.0 41.0 72-73 36.08360711167862 36.5 35.0 39.0 32.0 41.0 74-75 35.77698049638873 36.0 35.0 39.0 31.0 40.5 76-77 35.44915766101073 35.5 34.5 38.5 31.0 40.0 78-79 35.13451968504562 35.0 34.0 37.0 31.0 39.0 80-81 34.81887593063102 35.0 34.0 37.0 31.0 39.0 82-83 34.54152370944712 35.0 34.0 36.0 31.0 38.5 84-85 34.32275421337072 35.0 34.0 36.0 31.0 37.0 86-87 34.13384565323413 35.0 34.0 36.0 31.0 37.0 88-89 33.979046190488006 35.0 34.0 35.0 31.0 36.5 90-91 33.843001649076825 35.0 34.0 35.0 31.0 36.0 92-93 33.764009890119056 35.0 34.0 35.0 31.0 36.0 94-95 33.706467071428996 35.0 34.0 35.0 31.0 36.0 96-97 33.70438899265368 35.0 34.0 35.0 31.0 36.0 98-99 33.780843729148046 35.0 34.0 35.0 31.0 35.0 100 32.9339643805678 34.0 32.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 4.0 19 29.0 20 92.0 21 245.0 22 846.0 23 2461.0 24 6258.0 25 13311.0 26 24979.0 27 41780.0 28 63062.0 29 87970.0 30 117707.0 31 154489.0 32 200537.0 33 267648.0 34 381806.0 35 577599.0 36 997253.0 37 2028764.0 38 2819408.0 39 1465149.0 40 47093.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.03796615623265 20.21770841981689 14.333420946106099 24.410904477844365 2 14.22105346816784 20.69588018856125 42.29267774891861 22.790388594352304 3 17.927283262705394 26.235146516230806 30.508559882613223 25.32901033845058 4 12.315308761893865 18.69927941003767 38.19124649459288 30.794165333475576 5 13.273700724805702 37.67021577262206 35.3225662827908 13.733517219781444 6 29.29864249742517 37.974019636163874 18.76746206933799 13.959875797072963 7 26.156187476420907 32.846562646932426 22.41441945640218 18.582830420244488 8 24.164187053126465 36.763004151640935 21.19442593487202 17.878382860360585 9 25.192192454432394 17.21923296809848 20.986155604586205 36.602418972882916 10-11 23.96082074383674 26.992893041151188 28.597733912122525 20.448552302889546 12-13 25.126386084969475 24.250926924494852 28.686737591428802 21.935949399106867 14-15 22.193555686233854 25.56274178651764 26.326860312403344 25.91684221484516 16-17 21.71913467258992 28.982586638779708 26.946390877144378 22.35188781148599 18-19 21.79409306369248 27.61434864922183 28.967240064302903 21.62431822278279 20-21 22.474039768261537 26.672229112542517 28.977380032066876 21.876351087129066 22-23 22.064975111240425 27.070973099272415 28.88150766911543 21.982544120371728 24-25 22.019890876642382 27.14011125587943 29.030384185855198 21.809613681622995 26-27 21.89571067020186 27.105996012789035 29.220913958983648 21.777379358025456 28-29 21.583991459171 26.8230457221659 29.532561049072935 22.06040176959016 30-31 22.05406898208684 26.744659585528186 28.850792981866636 22.350478450518345 32-33 22.129911905165798 26.871503022357413 29.302692751845367 21.695892320631422 34-35 22.09605674317083 27.298381861155264 29.069121895569715 21.53643950010419 36-37 21.81301660379966 27.061584235485505 28.906581651887496 22.21881750882734 38-39 21.709462860002134 26.98311885833627 29.265215674288957 22.042202607372637 40-41 22.05289676509618 26.83243336642348 29.20083789089289 21.913831977587453 42-43 22.308762810654315 26.790870042751486 28.957442932479548 21.942924214114655 44-45 21.975994309252876 27.25537227729146 28.695035128724054 22.07359828473161 46-47 22.52297934954669 26.905229166603966 28.081400271187356 22.49039121266198 48-49 22.304602538488307 27.01804819443498 28.022521415785224 22.654827851291483 50-51 22.051291841117642 27.1755414307511 28.280064501666775 22.493102226464483 52-53 22.252195871530642 27.109303013829738 28.606242215071926 22.032258899567694 54-55 22.20791332103415 27.072684511932955 28.161517351859843 22.55788481517305 56-57 22.549395137052798 27.517613138572877 27.621930485028578 22.311061239345744 58-59 21.98724138940099 27.959798790906053 28.247464730778628 21.805495088914327 60-61 22.451459987926782 28.38352406092946 27.367137505371115 21.797878445772646 62-63 21.960921082113057 28.850131363605453 27.367463380416158 21.821484173865336 64-65 22.031300042191187 28.657397126604618 27.349433500146265 21.961869331057933 66-67 22.16650832823693 28.407113325999156 27.340490909601474 22.085887436162444 68-69 22.188781088287822 28.07663501365592 27.5516361998415 22.182947698214754 70-71 22.313077322404947 27.522026508304076 27.767822059511143 22.397074109779833 72-73 22.367261070765327 27.48719050777162 27.711560871701007 22.43398754976205 74-75 22.241959237329322 27.61904062376479 27.668499440053917 22.47050069885197 76-77 22.364692176311713 27.584460200464683 27.620852528647156 22.429995094576448 78-79 22.3573281238045 27.58213069482241 27.6006034659181 22.45993771545499 80-81 22.354565273893442 27.604249475752695 27.57646739287708 22.464717857476778 82-83 22.398383565938783 27.582778236932352 27.66774751511594 22.35109068201292 84-85 22.509349249965172 27.515792134129164 27.635848118926482 22.339010496979185 86-87 22.30811027474722 27.598368869149155 27.6927530158593 22.400767840244324 88-89 22.410389367734894 27.561239936014225 27.64413116541315 22.38423953083773 90-91 22.39971017999788 27.61226605650548 27.667672408065773 22.320351355430866 92-93 22.4095026158209 27.581848072256587 27.6863656317118 22.32228368021071 94-95 22.309843076538492 27.6699804625505 27.68452770889813 22.33564875201287 96-97 22.347926364538452 27.80949959165436 27.734566366056235 22.10800767775095 98-99 23.45419923946021 29.646325769732663 27.955093304326944 18.944381686480188 100 22.506117182994103 30.714224766651704 21.60542415189564 25.17423389845855 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1938.0 1 1688.5 2 2493.0 3 3634.5 4 4524.0 5 7453.5 6 10214.0 7 12574.0 8 14751.0 9 14785.5 10 12344.5 11 9415.0 12 9260.5 13 12574.0 14 22546.5 15 37059.0 16 49446.0 17 57728.0 18 60194.5 19 56916.0 20 50791.5 21 43803.0 22 39282.0 23 40540.5 24 47104.5 25 58584.0 26 74593.0 27 92558.0 28 110650.5 29 130520.5 30 150682.5 31 170234.0 32 191828.0 33 213059.0 34 232759.0 35 251229.0 36 272067.5 37 292384.0 38 306006.5 39 317587.5 40 331427.5 41 343733.5 42 352628.5 43 362277.0 44 370395.0 45 388434.0 46 418935.0 47 429347.5 48 419092.5 49 402726.0 50 384525.5 51 368800.5 52 351250.0 53 332202.0 54 311983.0 55 290647.0 56 269537.5 57 246277.5 58 220750.5 59 194078.0 60 163963.5 61 133440.0 62 105577.5 63 82039.0 64 62398.0 65 46657.0 66 34876.5 67 26682.5 68 20526.0 69 15070.5 70 11198.0 71 8290.0 72 5926.5 73 4231.5 74 2963.5 75 2057.0 76 1444.5 77 981.5 78 643.0 79 445.0 80 337.5 81 250.5 82 186.5 83 135.0 84 94.5 85 67.5 86 50.5 87 38.5 88 30.0 89 20.5 90 14.5 91 12.0 92 8.0 93 4.0 94 2.0 95 1.5 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 8.711089927269927E-4 3 0.0 4 0.0 5 0.0 6 0.03982366172923523 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.008391662109079667 26-27 0.004853554486099517 28-29 0.0018414046622427728 30-31 9.219913373791679E-4 32-33 0.003265027586780271 34-35 0.003340886847091189 36-37 0.015152704774148146 38-39 0.001239402219857121 40-41 0.002629318704304885 42-43 0.002593664257063519 44-45 0.003842218942105681 46-47 0.005956250122077576 48-49 0.0016574433861212803 50-51 5.784902515136776E-6 52-53 0.012486975245358571 54-55 0.004904941067279931 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0041200404784861875 64-65 0.0 66-67 1.2425195662662398E-5 68-69 0.006751677395415541 70-71 1.977742107533028E-4 72-73 0.0023333096779562116 74-75 0.0 76-77 2.2294349543008454E-4 78-79 7.942368059396204E-4 80-81 0.0024860904243215027 82-83 0.00819190322811596 84-85 0.005524599933132586 86-87 0.0 88-89 0.0 90-91 0.0010756351484945959 92-93 0.0 94-95 8.726829186671059E-4 96-97 0.0035075461141205497 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 264.0 20-21 913.0 22-23 1881.0 24-25 2429.0 26-27 4596.0 28-29 9632.0 30-31 22745.0 32-33 28474.0 34-35 38018.0 36-37 55806.0 38-39 65522.0 40-41 66746.0 42-43 77665.0 44-45 94180.0 46-47 91075.0 48-49 77862.0 50-51 67919.0 52-53 64411.0 54-55 67763.0 56-57 70561.0 58-59 71589.0 60-61 71771.0 62-63 77401.0 64-65 96064.0 66-67 102036.0 68-69 105118.0 70-71 92489.0 72-73 65090.0 74-75 65945.0 76-77 69982.0 78-79 72645.0 80-81 72529.0 82-83 69899.0 84-85 70689.0 86-87 74122.0 88-89 79658.0 90-91 84278.0 92-93 90785.0 94-95 111056.0 96-97 308518.0 98-99 596497.0 100-101 5941869.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.01005168740004 #Duplication Level Percentage of deduplicated Percentage of total 1 91.07509336696992 79.24448581294837 2 6.403740371894299 11.143795615024265 3 1.4429214051114612 3.7664599811881234 4 0.48354306477004616 1.6829242823490214 5 0.23681161015186575 1.0302495219745131 6 0.11684575454148477 0.6100053085264708 7 0.06429079991766402 0.39157620767021684 8 0.047188567837938206 0.32847037813067087 9 0.02941276709027352 0.2303285746314742 >10 0.09764991631745965 1.3247853630641333 >50 0.002028914282958694 0.11986069747751496 >100 3.9768038701480305E-4 0.05779197862188896 >500 3.789086505046475E-5 0.02154511447566218 >1k 3.788986247084781E-5 0.047721163917651084 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 2.150886401795044E-5 0.0 0.0 0.0 4 0.0 8.603545607180176E-5 0.0 0.0 1.075443200897522E-5 5 0.0 9.678988808077697E-5 0.0 0.0 1.075443200897522E-5 6 0.0 9.678988808077697E-5 0.0 0.0 1.075443200897522E-5 7 0.0 9.678988808077697E-5 0.0 0.0 1.075443200897522E-5 8 0.0 1.0754432008975219E-4 0.0 0.0 1.075443200897522E-5 9 0.0 2.3659750419745482E-4 0.0 0.0 1.075443200897522E-5 10-11 1.075443200897522E-5 2.3659750419745482E-4 0.0 5.37721600448761E-6 1.075443200897522E-5 12-13 2.150886401795044E-5 2.4735193620643E-4 0.0 1.075443200897522E-5 1.075443200897522E-5 14-15 2.150886401795044E-5 3.656506883051574E-4 0.0 1.075443200897522E-5 4.301772803590088E-5 16-17 2.6886080022438047E-5 3.656506883051574E-4 0.0 1.075443200897522E-5 5.3772160044876094E-5 18-19 3.2263296026925655E-5 3.71027904309645E-4 0.0 1.075443200897522E-5 5.3772160044876094E-5 20-21 3.2263296026925655E-5 3.7640512031413264E-4 0.0 1.075443200897522E-5 5.3772160044876094E-5 22-23 6.452659205385131E-5 4.3017728035900875E-4 0.0 1.075443200897522E-5 6.452659205385131E-5 24-25 9.678988808077697E-5 4.6781779239042203E-4 0.0 1.075443200897522E-5 7.528102406282653E-5 26-27 9.678988808077697E-5 4.8394944040388487E-4 0.0 1.075443200897522E-5 7.528102406282653E-5 28-29 1.0754432008975219E-4 4.8394944040388487E-4 0.0 1.9895699216604154E-4 7.528102406282653E-5 30-31 1.0754432008975219E-4 5.162127364308105E-4 0.0 8.065824006731414E-4 7.528102406282653E-5 32-33 1.1829875209872741E-4 5.269671684397857E-4 0.0 0.0023982383380014736 8.603545607180176E-5 34-35 1.1829875209872741E-4 5.91493760493637E-4 0.0 0.004344790531625988 8.603545607180176E-5 36-37 1.2905318410770262E-4 6.452659205385132E-4 0.0 0.007269996038067248 9.678988808077697E-5 38-39 1.2905318410770262E-4 6.667747845564636E-4 0.0 0.011281399177415004 9.678988808077697E-5 40-41 1.3980761611667784E-4 7.850735366551909E-4 0.0 0.01552402260495573 9.678988808077697E-5 42-43 1.3980761611667784E-4 8.065824006731414E-4 0.0 0.019470899152249636 9.678988808077697E-5 44-45 1.3980761611667784E-4 9.195039367673812E-4 0.0 0.0244340695243917 9.678988808077697E-5 46-47 1.3980761611667784E-4 0.0010109166088436705 0.0 0.02993496149698252 1.0754432008975219E-4 48-49 1.3980761611667784E-4 0.0010109166088436705 0.0 0.034849736925084196 1.2905318410770262E-4 50-51 1.3980761611667784E-4 0.0011614786569693236 0.0 0.03978602121720382 1.3980761611667784E-4 52-53 1.3980761611667784E-4 0.0011722330889782989 0.0 0.04480834096539525 1.4518483212116545E-4 54-55 1.4518483212116545E-4 0.0011776103049827864 0.0 0.04957793156137576 1.5056204812565307E-4 56-57 1.5056204812565307E-4 0.001182987520987274 0.0 0.054239977837266515 1.5593926413014068E-4 58-59 1.5593926413014068E-4 0.0011991191690007368 0.0 0.05933220139351628 1.666936961391159E-4 60-61 1.613164801346283E-4 0.001226005249023175 0.0 0.0639673615893846 1.720709121436035E-4 62-63 1.666936961391159E-4 0.0012528913290456131 0.0 0.06836054706505099 1.720709121436035E-4 64-65 1.720709121436035E-4 0.0014410938892026792 0.0 0.07239883628442118 1.720709121436035E-4 66-67 1.7744812814809112E-4 0.0014572255372161422 0.0 0.07671674073602472 1.8282534415257873E-4 68-69 1.828253441525787E-4 0.00148411161723858 0.0 0.08098087302758339 1.9357977616155393E-4 70-71 1.828253441525787E-4 0.0015163749132655058 0.0 0.08475030144672921 1.9357977616155393E-4 72-73 1.828253441525787E-4 0.001527129345274481 0.0 0.08758947149709867 2.312202881929672E-4 74-75 1.828253441525787E-4 0.0015755242893148694 0.0 0.0897887528429341 2.3659750419745482E-4 76-77 1.828253441525787E-4 0.0016776913934001341 0.0 0.0920902012928548 2.3659750419745482E-4 78-79 1.828253441525787E-4 0.0017314635534450102 0.0 0.09362808507013826 2.3659750419745482E-4 80-81 1.828253441525787E-4 0.0017314635534450102 0.0 0.0941227889425511 2.4735193620643E-4 82-83 1.828253441525787E-4 0.0017314635534450102 0.0 0.09432174593471715 2.6886080022438046E-4 84-85 1.828253441525787E-4 0.0017314635534450102 0.0 0.09445079911882487 2.6886080022438046E-4 86-87 1.828253441525787E-4 0.0017422179854539855 0.0 0.09448306241485178 2.6886080022438046E-4 88 1.828253441525787E-4 0.0018282534415257872 0.0 0.09449919406286525 2.6886080022438046E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 11480 0.0 54.128014 1 GGTATCA 13700 0.0 52.45357 1 TATACAC 15700 0.0 41.70532 3 TTATACA 16060 0.0 39.770916 2 GTATCAA 25715 0.0 39.337147 1 TCAACGC 31575 0.0 31.447008 4 ATCAACG 31795 0.0 31.229416 3 TACACAT 21070 0.0 31.156351 5 TATCAAC 32545 0.0 30.705053 2 CAACGCA 32570 0.0 30.564182 5 ACACATC 21010 0.0 29.957691 6 AACGCAG 33475 0.0 29.699997 6 ACATCTC 21410 0.0 29.28683 8 GTGGTAT 5885 0.0 27.151384 1 TGGTATC 5615 0.0 27.026598 2 CACATCT 23200 0.0 26.917927 7 ATACACA 26790 0.0 25.829477 4 ACGCAGA 38615 0.0 25.735727 7 CATCTCC 24235 0.0 25.716042 9 CGCAGAG 39335 0.0 25.243168 8 >>END_MODULE