##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140358_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9611182 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.51208561028186 34.0 31.0 34.0 31.0 34.0 2 32.501451018199425 34.0 31.0 34.0 31.0 34.0 3 32.59119252970134 34.0 31.0 34.0 31.0 34.0 4 36.10923422322041 37.0 35.0 37.0 35.0 37.0 5 36.18218737299949 37.0 37.0 37.0 35.0 37.0 6 36.161033575266806 37.0 37.0 37.0 35.0 37.0 7 36.152034057829724 37.0 36.0 37.0 35.0 37.0 8 36.147049967423364 37.0 36.0 37.0 35.0 37.0 9 37.89247763698575 39.0 38.0 39.0 35.0 39.0 10-11 37.8531645223241 39.0 38.0 39.0 35.0 39.0 12-13 37.84551582729367 39.0 38.0 39.0 35.0 39.0 14-15 39.23152761023566 40.0 39.0 41.0 36.0 41.0 16-17 39.235858607193165 40.0 39.0 41.0 36.0 41.0 18-19 39.303093365623496 40.0 39.0 41.0 36.0 41.0 20-21 39.324841837357056 40.0 39.0 41.0 36.0 41.0 22-23 39.28934959804202 40.0 39.0 41.0 36.0 41.0 24-25 39.23582234663331 40.0 39.0 41.0 36.0 41.0 26-27 39.19361786330574 40.0 39.0 41.0 36.0 41.0 28-29 39.17375862538883 40.0 39.0 41.0 36.0 41.0 30-31 39.092563337189716 40.0 39.0 41.0 35.5 41.0 32-33 38.98554225573763 40.0 38.0 41.0 35.0 41.0 34-35 38.95563188239882 40.0 38.0 41.0 35.0 41.0 36-37 38.883578575994 40.0 38.0 41.0 35.0 41.0 38-39 38.82794998827261 40.0 38.0 41.0 35.0 41.0 40-41 38.81046967012813 40.0 38.0 41.0 35.0 41.0 42-43 38.76300724414715 40.0 38.0 41.0 35.0 41.0 44-45 38.69808255767282 40.0 38.0 41.0 35.0 41.0 46-47 38.57381722671934 40.0 38.0 41.0 34.5 41.0 48-49 38.50090126871685 40.0 38.0 41.0 34.0 41.0 50-51 38.436784218823234 40.0 38.0 41.0 34.0 41.0 52-53 38.32297115547129 40.0 38.0 41.0 34.0 41.0 54-55 38.22736406407425 40.0 37.0 41.0 34.0 41.0 56-57 38.08460126958673 40.0 37.0 41.0 34.0 41.0 58-59 37.90378539738505 40.0 36.5 41.0 33.0 41.0 60-61 37.73735439900213 39.0 36.0 41.0 33.0 41.0 62-63 37.52447365748756 39.0 36.0 41.0 33.0 41.0 64-65 37.25991107525799 39.0 35.0 40.5 33.0 41.0 66-67 37.01016614565651 38.0 35.0 40.0 32.5 41.0 68-69 36.70446830745819 37.5 35.0 40.0 32.0 41.0 70-71 36.40949391640792 37.0 35.0 39.5 32.0 41.0 72-73 36.085245971963815 36.5 35.0 39.0 32.0 41.0 74-75 35.77439398790216 36.0 35.0 39.0 32.0 40.5 76-77 35.44682995386516 35.5 34.5 38.5 31.0 40.0 78-79 35.13359255254011 35.0 34.0 37.0 31.0 39.0 80-81 34.818175347320945 35.0 34.0 37.0 31.0 39.0 82-83 34.54329538891487 35.0 34.0 36.0 31.0 38.5 84-85 34.32989660736631 35.0 34.0 36.0 31.0 37.0 86-87 34.14571807289002 35.0 34.0 36.0 31.0 37.0 88-89 33.992834692763964 35.0 34.0 35.0 31.0 36.5 90-91 33.86091360032426 35.0 34.0 35.0 31.0 36.0 92-93 33.78399949505916 35.0 34.0 35.0 31.0 36.0 94-95 33.72734786440531 35.0 34.0 35.0 31.0 36.0 96-97 33.725080452156014 35.0 34.0 35.0 31.0 35.5 98-99 33.79975654507089 35.0 34.0 35.0 31.0 35.0 100 32.96404856414879 34.0 32.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 3.0 19 19.0 20 98.0 21 252.0 22 864.0 23 2494.0 24 6202.0 25 13524.0 26 25393.0 27 41485.0 28 62622.0 29 88190.0 30 117985.0 31 154787.0 32 202242.0 33 268741.0 34 387001.0 35 585756.0 36 1026746.0 37 2108170.0 38 2917091.0 39 1548927.0 40 52589.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.36002210758261 20.152079109520557 14.340400587565608 24.14749819533123 2 14.410974137627866 20.846102415268337 41.80713437142406 22.93578907567974 3 18.04504378337649 26.08929890204972 30.324469976741675 25.54118733783212 4 12.556520103354613 18.405800660106113 38.3773296562275 30.66034958031177 5 13.55195437980469 37.59812268667891 35.07123265379846 13.778690279717937 6 29.688138201467336 37.736601646536364 18.857100745325635 13.718159406670665 7 26.698277069355257 32.688175086061214 22.602131558844686 18.01141628573884 8 24.548988875665863 36.63419338016906 20.90711631514209 17.909701429022988 9 25.468958968834425 17.344131034039307 21.042448264948057 36.14446173217821 10-11 24.14116702815533 26.926917001467665 28.547513718916157 20.384402251460852 12-13 25.254791762345153 24.228403956974283 28.69120052039385 21.825603760286715 14-15 22.388073600104544 25.63028147838632 26.357569755728278 25.62407516578086 16-17 21.858320860014928 28.885359781970628 26.976921256927604 22.27939810108684 18-19 21.909427997513728 27.759291208927266 28.885469029719758 21.445811763839245 20-21 22.702669013124247 26.778172825268076 28.890229163557102 21.62892899805058 22-23 22.415878545491665 26.878130651340935 28.705733043356148 22.000257759811248 24-25 22.2932611145267 27.089801964703085 28.71242473210309 21.904512188667123 26-27 22.25282090659448 27.204799770943687 28.686049689602665 21.85632963285917 28-29 22.06585897325242 27.129131057199253 28.753074349927054 22.051935619621272 30-31 22.616581418954514 26.942521169355892 28.636022696094948 21.804874715594647 32-33 21.968553370980406 27.331514775270065 28.67395198471248 22.025979869037045 34-35 22.298297176818338 27.247694283779524 28.657748006007424 21.796260533394722 36-37 22.20915662620121 27.191751829199546 28.606119874811327 21.992971669787913 38-39 22.072366411177267 27.105178073170897 28.78604912456975 22.03640639108208 40-41 22.334116137279985 26.9444027933083 28.662696896435108 22.058784172976615 42-43 22.366063276897087 26.95201065254364 28.467935894229708 22.213990176329563 44-45 22.28654986575313 27.21018049717338 28.2710245608616 22.232245076211886 46-47 22.598943136498097 27.10091669509896 27.787061909257083 22.513078259145864 48-49 22.456622081596965 27.197337731210254 27.746710265620578 22.599329921572206 50-51 22.366635618329937 27.386947088447066 27.771405018472496 22.4750122747505 52-53 22.559473948900298 27.269678988473167 27.868591559158524 22.30225550346801 54-55 22.508929463482865 27.220013351619905 27.686888618425236 22.584168566471995 56-57 22.560906820413418 27.48146301718461 27.49781568533964 22.459814477062334 58-59 22.35180059975156 27.694994015300097 27.70457692437803 22.248628460570313 60-61 22.584175580723706 27.86199070846729 27.34239558352005 22.211438127288954 62-63 22.365319191902817 28.026643349800107 27.356142463611157 22.25189499468592 64-65 22.42893997426344 27.930313333605177 27.2886714567898 22.352075235341587 66-67 22.46993037825871 27.85722851930595 27.251468297801985 22.421372804633364 68-69 22.44030308641303 27.70532821654147 27.368404173307724 22.485964523737774 70-71 22.53212404255659 27.342223795156045 27.503061989399463 22.622590172887904 72-73 22.60872605856388 27.367423862151053 27.401130903357974 22.622719175927095 74-75 22.430618119088894 27.53567780586814 27.40292419384258 22.63077988120038 76-77 22.609617617678047 27.43926692368232 27.338743428005273 22.612372030634354 78-79 22.54992126008249 27.42771359381199 27.32799901053673 22.694366135568785 80-81 22.566052696706468 27.470691611965993 27.297426756847077 22.665828934480466 82-83 22.625753822647106 27.470456526739984 27.365523338888785 22.538266311724122 84-85 22.664271974010997 27.44477650523663 27.341830973091042 22.549120547661335 86-87 22.53998214499973 27.47651575896701 27.418228010150603 22.56527408588266 88-89 22.630810763663252 27.433317496061942 27.361522162584972 22.57434957768983 90-91 22.628533331585388 27.465480712305133 27.36908464142655 22.53690131468293 92-93 22.64174358921733 27.454517778131247 27.39098890160242 22.512749731049002 94-95 22.520648962334548 27.498184769486013 27.419451378351052 22.56171488982839 96-97 22.60780595945776 27.606753531574533 27.44632900706258 22.33911150190512 98-99 23.659622936240936 29.552524531073615 27.628860216685197 19.158992316000248 100 22.723602061711826 30.47417008782654 21.326865624048537 25.475362226413097 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1412.0 1 1308.0 2 2165.5 3 3217.0 4 4112.0 5 6904.5 6 9440.5 7 11144.5 8 12199.0 9 11811.0 10 10101.5 11 8039.5 12 8111.0 13 11008.5 14 19873.0 15 33276.0 16 45148.0 17 53171.0 18 55667.0 19 52802.5 20 46955.5 21 40443.0 22 36788.5 23 38288.0 24 44923.5 25 56606.0 26 72887.5 27 91198.0 28 109423.0 29 129464.5 30 149404.0 31 169460.0 32 192823.5 33 215775.5 34 237985.0 35 259451.0 36 283504.0 37 306173.5 38 322651.0 39 336469.0 40 350279.5 41 362692.0 42 371248.5 43 381368.0 44 401226.0 45 420535.5 46 419521.5 47 411420.0 48 405325.5 49 397620.5 50 390978.0 51 380885.0 52 366594.5 53 349064.5 54 330235.0 55 310735.0 56 288953.0 57 264998.5 58 239050.0 59 210315.5 60 177752.5 61 145910.0 62 116729.5 63 90644.5 64 69356.5 65 52092.5 66 38823.0 67 29696.5 68 22953.0 69 17008.5 70 12279.0 71 8904.0 72 6332.0 73 4452.0 74 3064.0 75 2079.5 76 1426.0 77 958.5 78 665.5 79 470.5 80 326.0 81 207.5 82 150.5 83 123.0 84 95.0 85 67.0 86 50.0 87 42.0 88 29.0 89 19.5 90 13.0 91 6.5 92 4.5 93 2.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 7.907456127664631E-4 3 0.0 4 0.0 5 0.0 6 0.042721072184461806 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.00844096034814642 26-27 0.00503898498184664 28-29 0.0017970335507726566 30-31 9.440968933422443E-4 32-33 0.0034772621825880567 34-35 0.0036354195623028293 36-37 0.01585189356612851 38-39 0.0013895861865374133 40-41 0.0031248504345091173 42-43 0.0026100052641384523 44-45 0.00404011311013446 46-47 0.006212003269533169 48-49 0.0016071692606378532 50-51 7.266468150483189E-5 52-53 0.013113277367953436 54-55 0.005034987486608608 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.004205505429507213 64-65 6.519481663276239E-5 66-67 2.3949475707058876E-5 68-69 0.0068977535105934976 70-71 2.569880087559486E-4 72-73 0.0024155305641839213 74-75 0.0 76-77 2.0123524481871125E-4 78-79 7.682503586967274E-4 80-81 0.0025780314651946833 82-83 0.00869293102120369 84-85 0.005448529417055101 86-87 0.0 88-89 0.0 90-91 0.0010947068020418038 92-93 1.3682719757991E-5 94-95 8.183988830381074E-4 96-97 0.003599909330377966 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 222.0 20-21 849.0 22-23 1690.0 24-25 2453.0 26-27 4719.0 28-29 9943.0 30-31 22607.0 32-33 28887.0 34-35 38602.0 36-37 57124.0 38-39 66950.0 40-41 67547.0 42-43 78852.0 44-45 95374.0 46-47 92643.0 48-49 79617.0 50-51 70120.0 52-53 67009.0 54-55 71878.0 56-57 74190.0 58-59 74992.0 60-61 73939.0 62-63 74493.0 64-65 84502.0 66-67 86485.0 68-69 90024.0 70-71 84487.0 72-73 69871.0 74-75 71748.0 76-77 74828.0 78-79 78178.0 80-81 78618.0 82-83 74746.0 84-85 75886.0 86-87 79644.0 88-89 85848.0 90-91 89918.0 92-93 95598.0 94-95 117205.0 96-97 322408.0 98-99 618515.0 100-101 6177973.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.36396588850175 #Duplication Level Percentage of deduplicated Percentage of total 1 90.79103639892632 78.41073970538595 2 6.491206406970902 11.21212657413718 3 1.5362986250322257 3.980425261405059 4 0.5352539585214061 1.8490661846171301 5 0.2355269616501638 1.0170521240888604 6 0.13334349324749176 0.6909643741368026 7 0.08224652931151236 0.49721955163349785 8 0.04695376689301212 0.32440908178278094 9 0.03320199181449568 0.2580710119647678 >10 0.11195471506899325 1.5238617211586525 >50 0.002285286019249683 0.13091516654001506 >100 6.725432518976353E-4 0.09176517709920874 >500 1.9323292401899383E-5 0.013384066050126492 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.040454753640083E-5 2 0.0 1.040454753640083E-5 0.0 0.0 1.040454753640083E-5 3 0.0 2.080909507280166E-5 0.0 0.0 1.040454753640083E-5 4 0.0 6.242728521840498E-5 0.0 0.0 2.080909507280166E-5 5 0.0 7.283183275480581E-5 0.0 0.0 2.080909507280166E-5 6 1.3525911797321078E-4 7.283183275480581E-5 0.0 0.0 3.121364260920249E-5 7 1.3525911797321078E-4 7.283183275480581E-5 0.0 0.0 3.121364260920249E-5 8 1.3525911797321078E-4 8.323638029120663E-5 0.0 1.040454753640083E-5 7.283183275480581E-5 9 1.3525911797321078E-4 1.6647276058241327E-4 0.0 1.040454753640083E-5 7.283183275480581E-5 10-11 1.4566366550961162E-4 1.6647276058241327E-4 0.0 3.121364260920249E-5 7.283183275480581E-5 12-13 1.5606821304601246E-4 1.6647276058241327E-4 0.0 4.161819014560332E-5 8.843865405940705E-5 14-15 1.768773081188141E-4 2.3410231956901868E-4 0.0 4.161819014560332E-5 1.1965229666860955E-4 16-17 2.809227834828224E-4 2.393045933372191E-4 0.0 4.161819014560332E-5 1.5086593927781202E-4 18-19 2.809227834828224E-4 2.4970914087361993E-4 0.0 4.161819014560332E-5 1.6127048681421286E-4 20-21 2.8612505725102285E-4 2.8612505725102285E-4 0.0 4.161819014560332E-5 1.6647276058241327E-4 22-23 2.9132733101922323E-4 3.3294552116482654E-4 0.0 4.682046391380374E-5 1.6647276058241327E-4 24-25 2.965296047874236E-4 3.485523424694278E-4 0.0 6.242728521840498E-5 1.8207958188701451E-4 26-27 3.121364260920249E-4 3.6415916377402903E-4 0.0 1.768773081188141E-4 1.8728185565521495E-4 28-29 3.121364260920249E-4 3.6415916377402903E-4 0.0 4.578000916016365E-4 1.9248412942341535E-4 30-31 3.121364260920249E-4 3.953728063832315E-4 0.0 0.0016491207845195314 1.9768640319161576E-4 32-33 3.121364260920249E-4 4.057773539196324E-4 0.0 0.004167021288328533 2.2890004580081825E-4 34-35 3.225409736284257E-4 4.734069129062378E-4 0.0 0.007678556081863812 2.2890004580081825E-4 36-37 3.225409736284257E-4 5.306319243564424E-4 0.0 0.012776784374700218 2.3410231956901868E-4 38-39 3.225409736284257E-4 5.462387456610435E-4 0.0 0.02016921539931301 2.393045933372191E-4 40-41 3.433500687012274E-4 6.502842210250519E-4 0.0 0.02822233519248725 2.393045933372191E-4 42-43 3.537546162376282E-4 6.710933160978536E-4 0.0 0.035989329928410474 2.445068671054195E-4 44-45 3.537546162376282E-4 7.543296963890601E-4 0.0 0.044349383873908535 2.4970914087361993E-4 46-47 3.537546162376282E-4 8.219592553756655E-4 0.0 0.053874747143483497 2.4970914087361993E-4 48-49 3.537546162376282E-4 8.219592553756655E-4 0.0 0.062739421644497 2.7051823594642155E-4 50-51 3.7976598507863033E-4 9.364092782760747E-4 0.0 0.07081335053274404 2.7051823594642155E-4 52-53 3.849682588468307E-4 9.572183733488764E-4 0.0 0.07973004777143955 2.809227834828224E-4 54-55 3.849682588468307E-4 9.676229208852771E-4 0.0 0.08706525378460214 2.965296047874236E-4 56-57 3.849682588468307E-4 9.884320159580789E-4 0.0 0.09256925943135819 3.121364260920249E-4 58-59 3.953728063832315E-4 9.884320159580789E-4 0.0 0.09831256967145144 3.277432473966261E-4 60-61 4.213841752242336E-4 0.0010092411110308806 0.0 0.10375414803298907 3.3294552116482654E-4 62-63 5.202273768200415E-4 0.0010248479323354816 0.0 0.10892520815858028 3.3294552116482654E-4 64-65 5.202273768200415E-4 0.0011705115978450933 0.0 0.11359685000242425 3.3294552116482654E-4 66-67 5.306319243564424E-4 0.0011965229666860955 0.0 0.11812282818075862 3.3294552116482654E-4 68-69 5.306319243564424E-4 0.0012329388830634985 0.0 0.12248753587227876 3.3294552116482654E-4 70-71 5.410364718928431E-4 0.0012381411568316988 0.0 0.12685744583756714 3.433500687012274E-4 72-73 5.826546620384465E-4 0.0012381411568316988 0.0 0.13016609195414258 3.745637113104299E-4 74-75 5.826546620384465E-4 0.0013005684420501038 0.0 0.13244989013838254 3.7976598507863033E-4 76-77 5.826546620384465E-4 0.0013838048223413103 0.0 0.13510304976016477 4.0057508015143195E-4 78-79 5.826546620384465E-4 0.001404613917414112 0.0 0.13675737281845252 4.057773539196324E-4 80-81 5.826546620384465E-4 0.0014150184649505129 0.0 0.13727239792150436 4.109796276878328E-4 82-83 5.878569358066469E-4 0.0014254230124869137 0.0 0.13759493889513277 4.3178872276063444E-4 84-85 5.930592095748473E-4 0.001441029833791515 0.0 0.13772499573933777 4.421932702970353E-4 86-87 5.982614833430478E-4 0.0014878502977053187 0.0 0.1378290412147018 4.473955440652357E-4 88 6.13868304647649E-4 0.0015502775829237237 0.0 0.1378394457622382 4.473955440652357E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13105 0.0 50.959305 1 GTATCAA 24380 0.0 38.60283 1 CTTATAC 8150 0.0 35.615353 1 TCAACGC 29705 0.0 30.954939 4 ATCAACG 30200 0.0 30.489658 3 TATCAAC 30770 0.0 30.159277 2 CAACGCA 30685 0.0 29.980127 5 AACGCAG 31620 0.0 29.147223 6 TATACAC 11650 0.0 27.934124 3 ACGCAGA 36445 0.0 25.298864 7 TTATACA 12060 0.0 25.052237 2 CGCAGAG 37200 0.0 24.774023 8 GTGGTAT 6365 0.0 24.63245 1 TGGTATC 5890 0.0 24.460646 2 GCAGAGT 43020 0.0 21.35353 9 TACACAT 15025 0.0 21.23637 5 ACACATC 13945 0.0 20.9971 6 ACATCTC 14240 0.0 20.789677 8 GAGTACT 24865 0.0 20.005302 12-13 GTACATG 31200 0.0 19.869825 1 >>END_MODULE