##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140356_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9872817 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.50719647695283 34.0 31.0 34.0 31.0 34.0 2 32.49295981076121 34.0 31.0 34.0 31.0 34.0 3 32.58268901368272 34.0 31.0 34.0 31.0 34.0 4 36.10871294383356 37.0 35.0 37.0 35.0 37.0 5 36.18128422718663 37.0 37.0 37.0 35.0 37.0 6 36.16046838506173 37.0 37.0 37.0 35.0 37.0 7 36.150329637427696 37.0 36.0 37.0 35.0 37.0 8 36.14367388760472 37.0 36.0 37.0 35.0 37.0 9 37.888235748722984 39.0 38.0 39.0 35.0 39.0 10-11 37.847573899121194 39.0 38.0 39.0 35.0 39.0 12-13 37.83948137598418 39.0 38.0 39.0 35.0 39.0 14-15 39.22288380307262 40.0 39.0 41.0 36.0 41.0 16-17 39.22731885945015 40.0 39.0 41.0 36.0 41.0 18-19 39.29440133449248 40.0 39.0 41.0 36.0 41.0 20-21 39.315822516521834 40.0 39.0 41.0 36.0 41.0 22-23 39.279516397713536 40.0 39.0 41.0 36.0 41.0 24-25 39.22719777767243 40.0 39.0 41.0 36.0 41.0 26-27 39.18731073998937 40.0 39.0 41.0 36.0 41.0 28-29 39.16773146652672 40.0 39.0 41.0 36.0 41.0 30-31 39.0880098060361 40.0 39.0 41.0 35.5 41.0 32-33 38.984601031795805 40.0 38.0 41.0 35.0 41.0 34-35 38.95902997042073 40.0 38.0 41.0 35.0 41.0 36-37 38.88866795805289 40.0 38.0 41.0 35.0 41.0 38-39 38.842176941047576 40.0 38.0 41.0 35.0 41.0 40-41 38.81894007675581 40.0 38.0 41.0 35.0 41.0 42-43 38.76640508168826 40.0 38.0 41.0 35.0 41.0 44-45 38.70068438495393 40.0 38.0 41.0 35.0 41.0 46-47 38.576848148289926 40.0 38.0 41.0 34.5 41.0 48-49 38.50263449004324 40.0 38.0 41.0 34.0 41.0 50-51 38.440080876844604 40.0 38.0 41.0 34.0 41.0 52-53 38.3258397163372 40.0 38.0 41.0 34.0 41.0 54-55 38.230838508576724 40.0 37.0 41.0 34.0 41.0 56-57 38.0894255043963 40.0 37.0 41.0 34.0 41.0 58-59 37.91580044652146 40.0 36.5 41.0 33.0 41.0 60-61 37.74849807395425 39.0 36.0 41.0 33.0 41.0 62-63 37.535660735533014 39.0 36.0 41.0 33.0 41.0 64-65 37.2678343976012 39.0 35.0 40.5 33.0 41.0 66-67 37.01447781331753 38.0 35.0 40.0 32.5 41.0 68-69 36.701860980253045 37.5 35.0 40.0 32.0 41.0 70-71 36.398341615592265 37.0 35.0 39.5 32.0 41.0 72-73 36.068718762706816 36.5 35.0 39.0 32.0 41.0 74-75 35.75616789140211 36.0 35.0 39.0 31.5 40.5 76-77 35.43050456638494 35.5 34.5 38.0 31.0 40.0 78-79 35.116747868079685 35.0 34.0 37.0 31.0 39.0 80-81 34.8024470052662 35.0 34.0 37.0 31.0 39.0 82-83 34.52860890469698 35.0 34.0 36.0 31.0 38.5 84-85 34.3143244538209 35.0 34.0 36.0 31.0 37.0 86-87 34.12777202391791 35.0 34.0 36.0 31.0 37.0 88-89 33.97727479597027 35.0 34.0 35.0 31.0 36.5 90-91 33.84627415479055 35.0 34.0 35.0 31.0 36.0 92-93 33.76928908737048 35.0 34.0 35.0 31.0 36.0 94-95 33.71029596539894 35.0 34.0 35.0 31.0 36.0 96-97 33.71002510378541 35.0 34.0 35.0 31.0 35.5 98-99 33.785969881767926 35.0 34.0 35.0 31.0 35.0 100 32.939342494917405 34.0 32.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 7.0 19 19.0 20 72.0 21 268.0 22 851.0 23 2613.0 24 6375.0 25 13757.0 26 25396.0 27 42591.0 28 63795.0 29 90030.0 30 120684.0 31 159497.0 32 207337.0 33 277083.0 34 397449.0 35 602841.0 36 1066955.0 37 2198790.0 38 2988832.0 39 1556667.0 40 50908.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.5622207927079 20.091955517862836 14.233789606350447 24.11203408307882 2 14.485237544805155 21.052476980066746 41.521205646087594 22.941079829040508 3 17.954531113055168 26.186639537631457 30.408332292596935 25.450497056716436 4 12.566666636280202 18.314630971079477 38.744939767444286 30.373762625196033 5 13.511584383666788 37.73408339281484 35.07446760129353 13.67986462222484 6 29.610318837595628 37.86215447371136 18.979963695635917 13.547562993057099 7 26.54030759407371 32.850087264860676 22.956953420690365 17.65265172037525 8 24.554673706602685 36.4796187349568 21.077125201449594 17.888582356990916 9 25.693892634695853 17.099142017926596 21.2046673203808 36.002298026996755 10-11 24.180221308670056 26.83254434879123 28.723271179846645 20.263963162692068 12-13 25.2342821709346 24.31198208170981 28.831365961710826 21.622369785644764 14-15 22.432685625591965 25.627012027063806 26.598887632577412 25.34141471476682 16-17 21.833515196321372 28.749823885118097 27.18963594686299 22.22702497169754 18-19 21.840747174793172 27.76931345937031 29.073606854051885 21.31633251178463 20-21 22.739435610363604 26.881898943877573 28.962829332378487 21.415836113380333 22-23 22.46646142300706 26.785629715632293 28.8051140691758 21.942794792184845 24-25 22.224844431044044 26.97642023471291 28.858249690473244 21.940485643769804 26-27 22.145313463750842 27.129579754144352 28.81903347846973 21.90607330363508 28-29 22.067037958868152 27.0698433134064 28.90759519634059 21.955523531384856 30-31 22.401334743400366 26.992914595960755 28.687066669943373 21.918683990695506 32-33 22.22169678732134 27.132880246689478 28.6711466298317 21.97427633615748 34-35 22.303589450391023 27.124420264244247 28.639621685029315 21.932368600335415 36-37 22.292917596720464 27.0822996552286 28.598974755477418 22.025807992573522 38-39 22.127200780400628 27.19606781152472 28.680409498700786 21.99632190937387 40-41 22.42757949008409 27.026290706712064 28.53097679474656 22.01515300845729 42-43 22.347045532638084 27.096565249276267 28.316531860528947 22.239857357556698 44-45 22.404033790020218 27.254681086800105 28.114783966202584 22.2265011569771 46-47 22.591539213559507 27.24762169954637 27.74186130294988 22.418977783944246 48-49 22.478508155240075 27.38277659670555 27.697063736109666 22.44165151194471 50-51 22.454650583880614 27.504712837107547 27.626462148705677 22.41417443030616 52-53 22.67588055371891 27.414140202847868 27.530249166492744 22.37973007694048 54-55 22.602755310081456 27.318471684406976 27.544297942215383 22.534475063296185 56-57 22.56955118213221 27.491687521753143 27.48853608233876 22.450225213775887 58-59 22.509783703481435 27.55988051017989 27.55701690504027 22.373318881298403 60-61 22.63874881321433 27.55187584756754 27.475319076673248 22.334056262544877 62-63 22.569430845255546 27.666899110505522 27.42788008364324 22.33578996059569 64-65 22.574419677220963 27.598399805110375 27.35707882921622 22.47010168845244 66-67 22.585095271018726 27.64229668019716 27.2724558772145 22.500152171569614 68-69 22.564851747584118 27.543482204281084 27.402245874568305 22.489420173566494 70-71 22.6052611859598 27.26484811400124 27.486677398852464 22.643213301186496 72-73 22.64489666817708 27.3534161378284 27.342432952851674 22.659254241142843 74-75 22.45690713472172 27.497903154027405 27.371821329688277 22.673368381562597 76-77 22.612539822077757 27.432605997856953 27.323769774127456 22.63108440593784 78-79 22.59709186464832 27.41726693399395 27.282987621733774 22.70265357962396 80-81 22.60136601080449 27.443036095162913 27.299846275137384 22.655751618895206 82-83 22.696166886672763 27.427130413229655 27.32301088513804 22.55369181495954 84-85 22.709379835936957 27.406515172715668 27.303462276484357 22.580642714863014 86-87 22.559191191067487 27.457085995504432 27.395047573428943 22.588675239999137 88-89 22.639816869027133 27.44205601398233 27.31028125712976 22.607845859860774 90-91 22.657760886674964 27.438968501876747 27.35357871971731 22.54969189173098 92-93 22.691188697676324 27.42703733029132 27.353463306178185 22.52831066585417 94-95 22.574658492398907 27.464558749411538 27.370029986817702 22.590752771371854 96-97 22.650343552499507 27.569786567843117 27.440719914223425 22.339149965433943 98-99 23.692692878118056 29.529532114787017 27.593099396664016 19.184675610430908 100 22.822144109892687 30.477987049336747 21.174476830231505 25.52539201053906 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1073.0 1 1028.0 2 2131.5 3 3378.5 4 4365.0 5 7621.0 6 10501.5 7 12180.0 8 12977.5 9 12172.0 10 10321.5 11 8117.5 12 8062.0 13 11123.0 14 20229.5 15 33768.5 16 45753.0 17 53636.5 18 56020.0 19 53168.5 20 47304.0 21 40843.5 22 37093.5 23 38789.0 24 46005.0 25 58611.0 26 76002.0 27 95002.5 28 113188.5 29 133114.5 30 153440.5 31 173946.5 32 197820.5 33 222099.5 34 246157.0 35 269182.0 36 293115.5 37 315771.0 38 332494.5 39 346244.0 40 361327.0 41 373857.5 42 381961.5 43 391440.5 44 403036.5 45 413304.5 46 415533.0 47 413823.0 48 413297.5 49 410233.0 50 403405.0 51 392969.5 52 378669.0 53 361413.0 54 343508.0 55 323168.0 56 300432.5 57 275574.5 58 248284.0 59 217948.0 60 183067.0 61 149409.5 62 119160.5 63 91718.5 64 68757.5 65 50946.5 66 37671.0 67 28509.0 68 21639.5 69 15664.5 70 11060.5 71 7753.5 72 5282.5 73 3499.5 74 2363.0 75 1615.0 76 1129.0 77 779.0 78 560.0 79 437.5 80 315.5 81 205.0 82 145.0 83 94.5 84 64.5 85 48.5 86 37.0 87 29.5 88 21.5 89 16.5 90 12.0 91 5.5 92 3.0 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 6.988886758460123E-4 3 0.0 4 0.0 5 0.0 6 0.04082927901935182 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.008627549838665325 26-27 0.004687484638986149 28-29 0.0017341429989528715 30-31 9.647235137951908E-4 32-33 0.0033289632631088363 34-35 0.003441745420423246 36-37 0.015223273307405898 38-39 0.0014710494373777869 40-41 0.002718593217936415 42-43 0.0024823341859679933 44-45 0.003804918650046571 46-47 0.005746020960587316 48-49 0.0014289496572947342 50-51 0.0 52-53 0.012571181437877924 54-55 0.004831958029226002 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0039506660012192255 64-65 1.1512854735519217E-5 66-67 2.9040367446607687E-5 68-69 0.006419421052640836 70-71 2.5451291348212315E-4 72-73 0.0022455599874176974 74-75 0.0 76-77 2.1881466999192027E-4 78-79 7.363432262682101E-4 80-81 0.002348639626408897 82-83 0.00844902235423559 84-85 0.005599150850224105 86-87 0.0 88-89 0.0 90-91 9.596465993682392E-4 92-93 6.609236368169097E-6 94-95 0.001011745019618138 96-97 0.0037239891316914616 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 227.0 20-21 829.0 22-23 1734.0 24-25 2395.0 26-27 4793.0 28-29 9921.0 30-31 23402.0 32-33 29232.0 34-35 38816.0 36-37 57296.0 38-39 68080.0 40-41 69624.0 42-43 81186.0 44-45 97840.0 46-47 93817.0 48-49 81078.0 50-51 71508.0 52-53 68756.0 54-55 73497.0 56-57 75057.0 58-59 75206.0 60-61 72862.0 62-63 71227.0 64-65 76155.0 66-67 79577.0 68-69 80677.0 70-71 78121.0 72-73 71453.0 74-75 73274.0 76-77 77021.0 78-79 79445.0 80-81 80256.0 82-83 77263.0 84-85 78074.0 86-87 82309.0 88-89 88310.0 90-91 93245.0 92-93 99152.0 94-95 121679.0 96-97 335313.0 98-99 643167.0 100-101 6389943.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.28833706302757 #Duplication Level Percentage of deduplicated Percentage of total 1 90.17590103845507 76.90952642729974 2 6.831940401122814 11.653696714509568 3 1.6442417105402607 4.207039236649403 4 0.6057718452336605 2.0666109327832247 5 0.27857325907434216 1.1879525008339298 6 0.15884981408495105 0.8128821891645942 7 0.08291441548122155 0.49501428304624345 8 0.056340832759190634 0.3844172747822013 9 0.03459216422329197 0.2655277345814156 >10 0.1275152349915173 1.709357376704232 >50 0.0025719284463290174 0.15478238806999484 >100 7.275764302634843E-4 0.09911558002070417 >500 3.9853061928322014E-5 0.026834961162291456 >1k 1.9926095277932047E-5 0.027242400392540757 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.0128821389072642E-5 0.0 0.0 0.0 3 0.0 1.0128821389072642E-5 0.0 0.0 0.0 4 0.0 4.051528555629057E-5 0.0 0.0 1.0128821389072642E-5 5 0.0 6.0772928334435854E-5 0.0 0.0 1.0128821389072642E-5 6 0.0 6.0772928334435854E-5 0.0 0.0 1.0128821389072642E-5 7 0.0 6.0772928334435854E-5 0.0 1.0128821389072642E-5 1.0128821389072642E-5 8 0.0 8.103057111258114E-5 0.0 1.0128821389072642E-5 2.0257642778145285E-5 9 0.0 1.8231878500330755E-4 0.0 1.0128821389072642E-5 4.051528555629057E-5 10-11 0.0 1.8231878500330755E-4 0.0 2.0257642778145285E-5 4.051528555629057E-5 12-13 0.0 1.8231878500330755E-4 0.0 2.0257642778145285E-5 4.051528555629057E-5 14-15 5.064410694536321E-6 2.937358202831067E-4 0.0 2.0257642778145285E-5 7.596616041804483E-5 16-17 1.0128821389072642E-5 3.089290523667156E-4 0.0 2.0257642778145285E-5 1.1141703527979907E-4 18-19 1.0128821389072642E-5 3.4944433792300617E-4 0.0 2.0257642778145285E-5 1.2154585666887171E-4 20-21 2.0257642778145285E-5 4.051528555629057E-4 0.0 2.5322053472681604E-5 1.2154585666887171E-4 22-23 2.0257642778145285E-5 4.25410498341051E-4 0.0 3.545087486175425E-5 1.671255529196986E-4 24-25 2.0257642778145285E-5 4.811190159809505E-4 0.0 7.596616041804481E-5 2.0257642778145286E-4 26-27 2.0257642778145285E-5 4.963122480645595E-4 0.0 1.2661026736340803E-4 2.0257642778145286E-4 28-29 2.0257642778145285E-5 5.013766587590959E-4 0.0 3.747663913956878E-4 2.0257642778145286E-4 30-31 2.0257642778145285E-5 5.469563550099227E-4 0.0 0.0011952009239105717 2.0764083847598917E-4 32-33 2.0257642778145285E-5 5.520207657044591E-4 0.0 0.0031753855054742733 2.1270524917052548E-4 34-35 2.0257642778145285E-5 6.634378009842581E-4 0.0 0.005844329941494915 2.2283407055959814E-4 36-37 2.0257642778145285E-5 7.647260148749846E-4 0.0 0.009440061534615702 2.2789848125413445E-4 38-39 2.0257642778145285E-5 8.001768897367388E-4 0.0 0.015284391476110618 2.329628919486708E-4 40-41 2.0257642778145285E-5 8.812074608493199E-4 0.0 0.021250267274274405 2.4309171333774341E-4 42-43 2.0257642778145285E-5 9.065295143220015E-4 0.0 0.026881891966598792 2.4815612403227975E-4 44-45 2.0257642778145285E-5 9.7743126404551E-4 0.0 0.03292373392518062 2.5322053472681607E-4 46-47 2.0257642778145285E-5 0.0010331397816854095 0.0 0.039760688362804664 2.582849454213524E-4 48-49 2.0257642778145285E-5 0.0010331397816854095 0.0 0.04662802926459591 3.038646416721793E-4 50-51 2.0257642778145285E-5 0.001104041531408918 0.0 0.053338373434856534 3.038646416721793E-4 52-53 2.5322053472681604E-5 0.001104041531408918 0.0 0.060099361712062524 3.5450874861754254E-4 54-55 3.0386464167217927E-5 0.0011242991741870633 0.0 0.0659386272428629 4.2034608764651466E-4 56-57 3.0386464167217927E-5 0.0011445568169652085 0.0 0.07026363397599691 4.4060373042465996E-4 58-59 3.0386464167217927E-5 0.0011749432811324265 0.0 0.07494821386844303 4.507325518137326E-4 60-61 3.0386464167217927E-5 0.0012053297452996445 0.0 0.07926309178018796 4.557969625082689E-4 62-63 3.0386464167217927E-5 0.0012559738522450077 0.0 0.08334500679998424 4.8618342667548683E-4 64-65 3.0386464167217927E-5 0.0014433570479428517 0.0 0.08760924060478381 4.8618342667548683E-4 66-67 3.0386464167217927E-5 0.001478807922804606 0.0 0.09167596239249648 4.963122480645595E-4 68-69 3.0386464167217927E-5 0.0015142587976663601 0.0 0.09588955209035072 5.165698908427048E-4 70-71 3.0386464167217927E-5 0.0015243876190554327 0.0 0.09970305334333655 5.266987122317774E-4 72-73 3.0386464167217927E-5 0.0015294520297499691 0.0 0.10263028272477856 5.773428191771406E-4 74-75 3.0386464167217927E-5 0.0015547740832226506 0.0 0.10488394548384722 5.773428191771406E-4 76-77 3.0386464167217927E-5 0.0016206114222516229 0.0 0.10730979820653011 5.773428191771406E-4 78-79 3.0386464167217927E-5 0.0016408690650297681 0.0 0.10880379936141832 5.773428191771406E-4 80-81 3.0386464167217927E-5 0.0016408690650297681 0.0 0.10933556248434464 5.874716405662132E-4 82-83 3.0386464167217927E-5 0.0016611267078079134 0.0 0.10968500682226764 6.229225154279676E-4 84-85 3.0386464167217927E-5 0.0016813843505860586 0.0 0.10976603739338023 6.279869261225039E-4 86-87 3.0386464167217927E-5 0.001686448761280595 0.0 0.10981161708963105 6.279869261225039E-4 88 3.0386464167217927E-5 0.0018231878500330756 0.0 0.10981668150032559 6.279869261225039E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13095 0.0 53.300156 1 GTATCAA 24570 0.0 39.023193 1 TCAACGC 29935 0.0 31.504002 4 ATCAACG 30340 0.0 31.097464 3 CAACGCA 31150 0.0 30.329742 5 TATCAAC 31355 0.0 30.267235 2 AACGCAG 31985 0.0 29.577799 6 ACGCAGA 36525 0.0 25.914478 7 CGCAGAG 37375 0.0 25.347843 8 GTGGTAT 5905 0.0 22.15783 1 GCAGAGT 43210 0.0 21.83647 9 GTACATG 31105 0.0 20.800133 1 TGGTATC 5835 0.0 20.603544 2 GAGTACT 24980 0.0 20.467117 12-13 TACATGG 31335 0.0 20.227188 2 ACATGGG 32065 0.0 19.475029 3 CAGAGTA 42080 0.0 19.395468 10-11 AGAGTAC 38915 0.0 19.07423 10-11 GTACTTT 27730 0.0 18.254313 14-15 AGTACTT 26780 0.0 17.2917 12-13 >>END_MODULE