##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140355_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8663506 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.33341536324901 34.0 31.0 34.0 31.0 34.0 2 32.5039559042263 34.0 31.0 34.0 31.0 34.0 3 32.63218943924088 34.0 31.0 34.0 31.0 34.0 4 36.10263558425423 37.0 35.0 37.0 35.0 37.0 5 36.19147398293485 37.0 37.0 37.0 35.0 37.0 6 36.17137934688335 37.0 37.0 37.0 35.0 37.0 7 36.16049437721865 37.0 36.0 37.0 35.0 37.0 8 36.14912392280908 37.0 36.0 37.0 35.0 37.0 9 37.885301401072496 39.0 38.0 39.0 35.0 39.0 10-11 37.85460845759211 39.0 38.0 39.0 35.0 39.0 12-13 37.848373279824585 39.0 38.0 39.0 35.0 39.0 14-15 39.24734143428769 40.0 39.0 41.0 36.0 41.0 16-17 39.25054700718162 40.0 39.0 41.0 36.0 41.0 18-19 39.30523069990371 40.0 39.0 41.0 36.0 41.0 20-21 39.31902598344306 40.0 39.0 41.0 36.0 41.0 22-23 39.28788081085567 40.0 39.0 41.0 36.0 41.0 24-25 39.241104995705484 40.0 39.0 41.0 36.0 41.0 26-27 39.19899854964909 40.0 39.0 41.0 36.0 41.0 28-29 39.17856035436722 40.0 39.0 41.0 36.0 41.0 30-31 39.09816877344073 40.0 39.0 41.0 35.5 41.0 32-33 38.9953748870212 40.0 38.0 41.0 35.0 41.0 34-35 38.97371139635862 40.0 38.0 41.0 35.0 41.0 36-37 38.90659118719988 40.0 38.0 41.0 35.0 41.0 38-39 38.853758508497 40.0 38.0 41.0 35.0 41.0 40-41 38.822764118301855 40.0 38.0 41.0 35.0 41.0 42-43 38.7666503961929 40.0 38.0 41.0 35.0 41.0 44-45 38.69708247720462 40.0 38.0 41.0 35.0 41.0 46-47 38.56839507924158 40.0 38.0 41.0 34.5 41.0 48-49 38.48639254844436 40.0 38.0 41.0 34.0 41.0 50-51 38.41680684082232 40.0 38.0 41.0 34.0 41.0 52-53 38.29775306988758 40.0 37.5 41.0 34.0 41.0 54-55 38.197960246253416 40.0 37.0 41.0 34.0 41.0 56-57 38.051004758342465 40.0 37.0 41.0 34.0 41.0 58-59 37.866928027129774 39.5 36.5 41.0 33.0 41.0 60-61 37.69415725480469 39.0 36.0 41.0 33.0 41.0 62-63 37.47448840091215 39.0 35.5 41.0 33.0 41.0 64-65 37.200792261862404 39.0 35.0 40.5 33.0 41.0 66-67 36.943933924395324 38.0 35.0 40.0 32.0 41.0 68-69 36.62976048243283 37.0 35.0 40.0 32.0 41.0 70-71 36.3291621422362 37.0 35.0 39.5 32.0 41.0 72-73 36.00428859325761 36.0 35.0 39.0 32.0 41.0 74-75 35.69016050098073 36.0 35.0 39.0 31.0 40.5 76-77 35.36680204713784 35.5 34.0 37.5 31.0 39.5 78-79 35.058182001312844 35.0 34.0 37.0 31.0 39.0 80-81 34.750501217084896 35.0 34.0 37.0 31.0 39.0 82-83 34.48029765394324 35.0 34.0 36.0 31.0 38.5 84-85 34.27446716321303 35.0 34.0 36.0 31.0 37.0 86-87 34.096267044084215 35.0 34.0 35.5 31.0 37.0 88-89 33.95190447769426 35.0 34.0 35.0 31.0 36.5 90-91 33.82502313008089 35.0 34.0 35.0 31.0 36.0 92-93 33.752657705269485 35.0 34.0 35.0 31.0 36.0 94-95 33.69775553419335 35.0 34.0 35.0 31.0 36.0 96-97 33.69741690949634 35.0 34.0 35.0 31.0 35.5 98-99 33.780101853564716 35.0 34.0 35.0 31.0 35.0 100 32.934510755144565 34.0 32.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 22.0 20 78.0 21 247.0 22 786.0 23 2261.0 24 5543.0 25 12049.0 26 22750.0 27 37660.0 28 56508.0 29 81007.0 30 108460.0 31 141433.0 32 184290.0 33 246980.0 34 357703.0 35 541685.0 36 947062.0 37 1936737.0 38 2594660.0 39 1337589.0 40 47994.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.36332334738384 20.102623579876322 14.239073649859538 24.294979422880296 2 14.554677432535943 20.801177086021838 41.56592517419202 23.078220307250202 3 18.10390620148471 26.118363627843046 30.06721528212712 25.71051488854512 4 12.765547804780189 18.066265551152156 38.3932555711279 30.774931072939754 5 13.703332115196782 37.52753215615018 34.98672477401181 13.782410954641227 6 30.0895785453974 37.552632894703265 18.725676862056982 13.632111697842353 7 26.70992551976071 32.60404044274916 22.89448405760901 17.791549979881125 8 24.68257077446475 36.533292641570284 20.911176145084912 17.872960438880057 9 25.81346397174539 17.142401702036103 21.084997228604678 35.959137097613834 10-11 24.592659138228797 26.681599804975033 28.430100931424303 20.295640125371875 12-13 25.456760807922336 24.14061351143521 28.582400704749322 21.820224975893133 14-15 22.560144818968208 25.424158533508255 26.270051639601792 25.745645007921738 16-17 22.064265898817407 28.55229741862013 26.93912833903503 22.444308343527435 18-19 22.152348021690063 27.591849073573677 28.706536360683536 21.54926654405272 20-21 22.91389187358204 26.755291516103753 28.607751411475927 21.723065198838277 22-23 22.688791679569814 26.73529553521773 28.44720955797787 22.128703227234592 24-25 22.475583798905582 26.89402735362779 28.501393339200064 22.12899550826656 26-27 22.381394233634406 27.020685701244624 28.4563983799219 22.14152168519907 28-29 22.27801184836478 26.98779692835406 28.491910026003364 22.24228119727779 30-31 22.689896227070744 26.853238765622635 28.343392542998192 22.113472464308433 32-33 22.481399198887985 27.03163133857712 28.31184440932831 22.175125053206582 34-35 22.54215961367487 27.046851819976947 28.35623440393988 22.0547541624083 36-37 22.52884017054772 26.928518851459586 28.318892011821305 22.223748966171385 38-39 22.376956169891812 27.070277546777 28.39263192075553 22.16013436257566 40-41 22.602052107605516 26.849456227555386 28.31367374053457 22.234817924304533 42-43 22.52760892634163 26.943302852472538 28.072413471432423 22.45667474975341 44-45 22.545171974479754 27.050223228793385 27.971121753755334 22.433483042971528 46-47 22.782605379237967 27.061792677080714 27.564135534096383 22.591466409584932 48-49 22.62690195121587 27.202055675204097 27.51809080445455 22.652951569125488 50-51 22.603205313675726 27.298822017704023 27.502877756145967 22.595094912474288 52-53 22.800756550833533 27.21005052716576 27.40519319320822 22.583999728792488 54-55 22.691422743565155 27.111800178835903 27.434431737806086 22.76234533979286 56-57 22.7041188552957 27.21968849496601 27.41181943233701 22.66437321740128 58-59 22.65447492275712 27.313436746030234 27.46647436913524 22.565613962077403 60-61 22.749256753299843 27.337396263326895 27.391806886043273 22.521540097329982 62-63 22.70085919545915 27.490846757132253 27.286121724568602 22.52217232284 64-65 22.65885452851842 27.42450968283131 27.228698028438654 22.687937760211618 66-67 22.70408262590054 27.456726657313542 27.129254817270144 22.709935899515774 68-69 22.635074021479387 27.382334475517617 27.23636638952357 22.74622511347943 70-71 22.65540685791572 27.120724531411994 27.322451273175645 22.901417337496635 72-73 22.734126266772662 27.17064578104571 27.145428274210325 22.949799677971303 74-75 22.592976284475892 27.362912611817574 27.183210181701668 22.860900922004866 76-77 22.802264180626352 27.23189986534767 27.144538538123903 22.82129741590207 78-79 22.714088133982628 27.29141544787189 27.07352847080046 22.92096794734502 80-81 22.78688705166218 27.32421690846052 27.031706073962575 22.857189965914728 82-83 22.76679773838121 27.316612701107424 27.16879566916675 22.74779389134461 84-85 22.82815109303459 27.330488194734393 27.097873795235706 22.743486916995316 86-87 22.704287692945467 27.36272301941336 27.191973711319406 22.741015576321765 88-89 22.731530537571444 27.338894819745096 27.1455581336829 22.78401650900056 90-91 22.79619914515112 27.32232362804354 27.17332795490303 22.708149271902307 92-93 22.866587078841903 27.283378318882228 27.18673173123057 22.6633028710453 94-95 22.692847204833182 27.340997621479584 27.240844257653627 22.725310916033607 96-97 22.771812731846527 27.43944617330821 27.309702881811514 22.47903821303375 98-99 23.80757881517708 29.400255442855173 27.44444667382715 19.347719068140602 100 22.876477469349656 30.3430598053535 21.131521066921017 25.64894165837583 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1116.0 1 1013.0 2 1735.5 3 2656.5 4 3333.5 5 5418.5 6 7289.5 7 8633.5 8 9415.5 9 9171.5 10 8189.5 11 6814.0 12 7018.5 13 9350.0 14 16480.0 15 26817.5 16 35837.5 17 42035.5 18 43864.0 19 41472.5 20 36516.5 21 31000.5 22 27807.5 23 28863.5 24 34009.0 25 43348.0 26 56102.0 27 70992.5 28 87395.0 29 106071.0 30 125288.5 31 145413.0 32 167634.0 33 188710.5 34 209074.5 35 228008.0 36 247745.5 37 267580.5 38 282557.5 39 293816.5 40 305696.5 41 316354.5 42 324000.0 43 332992.5 44 341038.0 45 351364.5 46 359760.5 47 361883.5 48 361775.5 49 356793.0 50 350543.5 51 343904.5 52 333856.5 53 319887.0 54 305388.5 55 288984.0 56 270312.5 57 248115.0 58 223174.5 59 197516.5 60 166502.0 61 136117.0 62 108785.5 63 83796.0 64 63469.0 65 47195.0 66 34769.0 67 26561.5 68 20519.0 69 15217.5 70 11065.0 71 8048.5 72 5769.5 73 3961.0 74 2717.0 75 1884.5 76 1330.5 77 951.0 78 661.5 79 474.0 80 343.5 81 243.5 82 182.0 83 147.5 84 118.5 85 86.5 86 74.5 87 70.5 88 55.5 89 43.0 90 33.5 91 24.5 92 16.5 93 8.5 94 3.0 95 1.5 96 0.5 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 9.003283428210241E-4 3 0.0 4 0.0 5 0.0 6 0.03791767443803929 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.008324816080450284 26-27 0.004700444809906274 28-29 0.0016810743208734145 30-31 8.730638580298717E-4 32-33 0.003191279501525617 34-35 0.0031985685273860157 36-37 0.014041613027821379 38-39 0.0013049398703603684 40-41 0.0027067114027219986 42-43 0.0022077656647928674 44-45 0.00359543026180039 46-47 0.004000199227967564 48-49 0.00137101372451469 50-51 6.111831730026701E-6 52-53 0.009683286997308058 54-55 0.002693425737856241 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.003956622652430483 64-65 0.0 66-67 1.9467646815096226E-5 68-69 0.006719306913315439 70-71 1.9176137584687444E-4 72-73 0.0019551693677142415 74-75 0.0 76-77 1.6302530404049384E-4 78-79 5.280667476369013E-4 80-81 0.002438512255359895 82-83 0.008713711939101162 84-85 0.005831986615696753 86-87 0.0 88-89 0.0 90-91 0.0010084455119351717 92-93 1.4801527428821491E-5 94-95 8.031420116455593E-4 96-97 0.004082316034985065 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 192.0 20-21 704.0 22-23 1386.0 24-25 1836.0 26-27 3043.0 28-29 5456.0 30-31 13875.0 32-33 18295.0 34-35 24711.0 36-37 38373.0 38-39 46115.0 40-41 48766.0 42-43 57819.0 44-45 72196.0 46-47 72339.0 48-49 63092.0 50-51 55245.0 52-53 51320.0 54-55 55539.0 56-57 59501.0 58-59 61258.0 60-61 62143.0 62-63 61741.0 64-65 66188.0 66-67 69775.0 68-69 72574.0 70-71 70850.0 72-73 65081.0 74-75 66179.0 76-77 69129.0 78-79 72567.0 80-81 74235.0 82-83 71417.0 84-85 70725.0 86-87 75358.0 88-89 80966.0 90-91 85247.0 92-93 91374.0 94-95 112292.0 96-97 305468.0 98-99 574094.0 100-101 5695042.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.59313977596541 #Duplication Level Percentage of deduplicated Percentage of total 1 91.12120207792717 78.90470988087937 2 6.27437926692701 10.866364017368602 3 1.4031760641144473 3.6451626315045402 4 0.5321207994136177 1.8431204304528739 5 0.2431336085616173 1.0526851275205493 6 0.1398585281220822 0.7266473444721752 7 0.07771369427062841 0.4710630953338218 8 0.049672515925203435 0.34410392916280075 9 0.03838832331450096 0.299174890188378 >10 0.11688585478736319 1.5595952507000852 >50 0.0028256076240422115 0.1602532550933651 >100 6.011066919966117E-4 0.0899411321861814 >500 2.127616446360447E-5 0.014481027282685575 >1k 2.1276155926459188E-5 0.02269798785451262 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.3085342123616004E-5 0.0 1.1542671061808002E-5 0.0 3 0.0 2.3085342123616004E-5 0.0 1.1542671061808002E-5 0.0 4 0.0 6.925602637084801E-5 0.0 2.3085342123616004E-5 0.0 5 0.0 8.079869743265601E-5 0.0 2.3085342123616004E-5 0.0 6 1.1542671061808002E-5 8.079869743265601E-5 0.0 2.3085342123616004E-5 0.0 7 1.1542671061808002E-5 8.079869743265601E-5 0.0 2.3085342123616004E-5 1.1542671061808002E-5 8 2.3085342123616004E-5 1.1542671061808002E-4 0.0 2.3085342123616004E-5 2.3085342123616004E-5 9 2.3085342123616004E-5 1.3851205274169603E-4 0.0 4.617068424723201E-5 3.4628013185424006E-5 10-11 2.3085342123616004E-5 1.3851205274169603E-4 0.0 5.771335530904001E-5 3.4628013185424006E-5 12-13 2.3085342123616004E-5 1.3851205274169603E-4 0.0 6.925602637084801E-5 3.4628013185424006E-5 14-15 2.3085342123616004E-5 2.5393876335977605E-4 0.0 6.925602637084801E-5 4.617068424723201E-5 16-17 3.4628013185424006E-5 2.5393876335977605E-4 0.0 6.925602637084801E-5 8.079869743265601E-5 18-19 3.4628013185424006E-5 2.712527699524881E-4 0.0 9.234136849446402E-5 9.811270402536802E-5 20-21 3.4628013185424006E-5 3.0010944760700805E-4 0.0 9.811270402536802E-5 1.0388403955627202E-4 22-23 3.4628013185424006E-5 3.4050879632333605E-4 0.0 1.1542671061808002E-4 1.1542671061808002E-4 24-25 4.617068424723201E-5 3.635941384469521E-4 0.0 1.4428338827260004E-4 1.2696938167988802E-4 26-27 4.617068424723201E-5 3.6936547397785607E-4 0.0 1.5582605933440801E-4 1.32740717210792E-4 28-29 4.617068424723201E-5 3.6936547397785607E-4 0.0 2.9433811207610404E-4 1.3851205274169603E-4 30-31 4.617068424723201E-5 4.790208490650321E-4 0.0 0.0010157550534391042 1.3851205274169603E-4 32-33 4.617068424723201E-5 4.847921845959361E-4 0.0 0.003024179818193697 1.5005472380350403E-4 34-35 4.617068424723201E-5 5.540482109667841E-4 0.0 0.0056674514913477286 1.7314006592712003E-4 36-37 4.617068424723201E-5 6.348469083994402E-4 0.0 0.01063080004792517 1.7314006592712003E-4 38-39 5.771335530904001E-5 6.810175926466721E-4 0.0 0.026634713475121963 1.8468273698892803E-4 40-41 5.771335530904001E-5 7.271882768939041E-4 0.0 0.044375798897120865 1.8468273698892803E-4 42-43 5.771335530904001E-5 7.387309479557121E-4 0.0 0.054654547477660895 1.9045407251983205E-4 44-45 5.771335530904001E-5 8.079869743265601E-4 0.0 0.06771507978409665 2.0776807911254404E-4 46-47 5.771335530904001E-5 8.657003296356001E-4 0.0 0.08041201795208544 2.4239609229796804E-4 48-49 5.771335530904001E-5 8.887856717592162E-4 0.0 0.09225479846150045 2.5393876335977605E-4 50-51 5.771335530904001E-5 0.0010330690600318163 0.0 0.10420146301047174 2.654814344215841E-4 52-53 5.771335530904001E-5 0.0010446117310936242 0.0 0.14335997458765537 2.9433811207610404E-4 54-55 5.771335530904001E-5 0.0010503830666245282 0.0 0.19128514483628223 3.289661252615281E-4 56-57 5.771335530904001E-5 0.0010619257376863363 5.771335530904001E-6 0.237588569800725 3.347374607924321E-4 58-59 6.925602637084801E-5 0.0010792397442790482 1.1542671061808002E-5 0.261152932773406 3.347374607924321E-4 60-61 6.925602637084801E-5 0.001090782415340856 1.1542671061808002E-5 0.27641811525264715 3.347374607924321E-4 62-63 9.234136849446402E-5 0.0011023250864026642 1.1542671061808002E-5 0.28841672182139655 3.4628013185424006E-4 64-65 9.234136849446402E-5 0.0013389498431697284 1.1542671061808002E-5 0.29383600588491543 3.4628013185424006E-4 66-67 9.234136849446402E-5 0.0013562638497624402 1.1542671061808002E-5 0.29879935444149286 3.4628013185424006E-4 68-69 9.234136849446402E-5 0.0013908918629478642 1.1542671061808002E-5 0.30361841960979774 3.520514673851441E-4 70-71 9.811270402536802E-5 0.0014082058695405763 1.1542671061808002E-5 0.30772761050780134 3.6936547397785607E-4 72-73 1.2696938167988802E-4 0.0014139772050714803 1.1542671061808002E-5 0.31087298837214405 3.9245081610147207E-4 74-75 1.2696938167988802E-4 0.0014428338827260003 1.1542671061808002E-5 0.3136778574401634 3.9245081610147207E-4 76-77 1.2696938167988802E-4 0.0014832332314423282 1.1542671061808002E-5 0.31627495842907016 3.982221516323761E-4 78-79 1.2696938167988802E-4 0.0015120899090968482 1.1542671061808002E-5 0.3178736183711306 4.039934871632801E-4 80-81 1.2696938167988802E-4 0.0015236325801586564 1.1542671061808002E-5 0.3184161239110356 4.097648226941841E-4 82-83 1.3851205274169603E-4 0.0015351752512204643 1.1542671061808002E-5 0.3187912607205443 4.155361582250881E-4 84-85 1.3851205274169603E-4 0.0015467179222822722 1.1542671061808002E-5 0.3189182301022242 4.155361582250881E-4 86-87 1.3851205274169603E-4 0.0015928886065295043 1.1542671061808002E-5 0.31899902879965686 4.155361582250881E-4 88 1.3851205274169603E-4 0.0016390592907767362 1.1542671061808002E-5 0.3190048001351878 4.270788292868961E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10785 0.0 50.154263 1 GTATCAA 20000 0.0 39.946053 1 TCAACGC 23950 0.0 32.550697 4 ATCAACG 24100 0.0 32.3481 3 CAACGCA 24615 0.0 31.775948 5 TATCAAC 24980 0.0 31.329374 2 AACGCAG 25610 0.0 30.658726 6 ACGCAGA 29265 0.0 26.761557 7 CGCAGAG 29985 0.0 26.076023 8 GTGGTAT 5205 0.0 23.75359 1 TGGTATC 5080 0.0 22.225397 2 GCAGAGT 35265 0.0 22.110985 9 GTACATG 25740 0.0 22.03189 1 TACATGG 26100 0.0 21.39904 2 ACATGGG 26685 0.0 20.38259 3 GAGTACT 19895 0.0 20.373003 12-13 CAGAGTA 33825 0.0 19.366718 10-11 AGAGTAC 31275 0.0 18.935587 10-11 CATGGGG 21590 0.0 18.909403 4 GTACTTT 21765 0.0 18.554663 14-15 >>END_MODULE