##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140352_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 14928437 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.11530282775082 28.0 18.0 32.0 18.0 33.0 2 27.684325291388507 29.0 25.0 31.0 18.0 33.0 3 30.467965065599298 31.0 29.0 33.0 27.0 33.0 4 30.241108027585206 31.0 29.0 33.0 27.0 33.0 5 31.969998131753513 33.0 32.0 33.0 31.0 33.0 6 35.81150216864632 38.0 36.0 38.0 31.0 38.0 7 36.08418731311255 38.0 37.0 38.0 33.0 38.0 8 36.529030936058476 38.0 37.0 38.0 34.0 38.0 9 36.71809332751982 38.0 38.0 38.0 34.0 38.0 10-11 36.86552520535137 38.0 38.0 38.0 35.0 38.0 12-13 36.93024366850997 38.0 38.0 38.0 35.0 38.0 14-15 36.947946861416234 38.0 38.0 38.0 35.0 38.0 16-17 36.975383658717924 38.0 38.0 38.0 35.0 38.0 18-19 36.98397350640258 38.0 38.0 38.0 35.0 38.0 20-21 36.993169925732005 38.0 38.0 38.0 36.0 38.0 22-23 37.00799642344965 38.0 38.0 38.0 36.0 38.0 24-25 37.0241220401417 38.0 38.0 38.0 36.0 38.0 26-27 36.989082617447394 38.0 38.0 38.0 36.0 38.0 28-29 36.971763093409464 38.0 38.0 38.0 36.0 38.0 30-31 36.961307259681206 38.0 38.0 38.0 36.0 38.0 32-33 36.93941079136351 38.0 38.0 38.0 35.0 38.0 34-35 36.931062180055164 38.0 38.0 38.0 35.0 38.0 36-37 36.912525484836536 38.0 38.0 38.0 35.0 38.0 38-39 36.8966900616052 38.0 38.0 38.0 35.0 38.0 40-41 36.87880017836157 38.0 38.0 38.0 35.0 38.0 42-43 36.84012053674144 38.0 38.0 38.0 35.0 38.0 44-45 36.80574266620385 38.0 38.0 38.0 35.0 38.0 46-47 36.75805706922447 38.0 38.0 38.0 35.0 38.0 48-49 36.72219098602703 38.0 38.0 38.0 35.0 38.0 50-51 36.692311058198044 38.0 38.0 38.0 35.0 38.0 52-53 36.5950821585731 38.0 38.0 38.0 34.0 38.0 54-55 36.63797102072989 38.0 38.0 38.0 34.0 38.0 56-57 36.63251950092608 38.0 38.0 38.0 34.0 38.0 58-59 36.625749702515165 38.0 38.0 38.0 34.0 38.0 60-61 36.594426848723494 38.0 38.0 38.0 34.0 38.0 62-63 36.60931052457032 38.0 38.0 38.0 34.0 38.0 64-65 36.62225621088496 38.0 38.0 38.0 34.0 38.0 66-67 36.61778447398288 38.0 38.0 38.0 34.0 38.0 68-69 36.6057036804918 38.0 38.0 38.0 34.0 38.0 70-71 36.6036252421393 38.0 38.0 38.0 34.0 38.0 72-73 36.59381875671103 38.0 38.0 38.0 34.0 38.0 74-75 36.58278075505967 38.0 38.0 38.0 34.0 38.0 76-77 36.56497337081806 38.0 38.0 38.0 34.0 38.0 78-79 36.54750522258128 38.0 38.0 38.0 34.0 38.0 80-81 36.52539974283842 38.0 38.0 38.0 34.0 38.0 82-83 36.497331778416886 38.0 38.0 38.0 34.0 38.0 84-85 36.5001091563913 38.0 38.0 38.0 34.0 38.0 86-87 36.48810776706814 38.0 38.0 38.0 34.0 38.0 88-89 36.46353103036784 38.0 38.0 38.0 34.0 38.0 90-91 36.45707448322667 38.0 38.0 38.0 34.0 38.0 92-93 36.4641610339192 38.0 38.0 38.0 34.0 38.0 94-95 36.44266143399328 38.0 38.0 38.0 34.0 38.0 96-97 36.39007580786983 38.0 38.0 38.0 34.0 38.0 98-99 36.39368970618098 38.0 38.0 38.0 34.0 38.0 100-101 35.90189914329521 38.0 36.5 38.0 31.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 12.0 19 19.0 20 83.0 21 489.0 22 2173.0 23 7007.0 24 17156.0 25 33122.0 26 55831.0 27 86764.0 28 125017.0 29 168676.0 30 219329.0 31 280924.0 32 358381.0 33 471038.0 34 664348.0 35 1070524.0 36 2576685.0 37 8790858.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 39.87243272688226 22.79231241689937 13.709030623902557 23.626224232315813 2 15.880249218320714 21.22045328656979 40.122432107259456 22.776865387850048 3 18.329397831354193 26.834188425805905 29.615499781956444 25.220913960883458 4 13.54035924859381 18.217841559702467 37.75264617454594 30.48915301715779 5 14.035736009987183 37.57324239859911 35.054213970323325 13.33680762109038 6 30.720938836396606 37.60861234166711 18.233228301127575 13.43722052080871 7 27.105623984614063 32.761929463881586 22.588084740552546 17.54436181095181 8 25.14058236639241 36.400200503240896 20.670797619335502 17.788419511031194 9 26.317999667346285 16.392566750290065 20.624469929437357 36.66496365292629 10-11 24.768008198045113 26.517447874817705 28.498780548827717 20.215763378309465 12-13 25.473226031633452 24.102208422757183 28.592708667357474 21.83185687825189 14-15 22.703910663922823 25.40594839231997 26.192651648662213 25.697489295094993 16-17 22.185899300777436 28.401519864403756 26.963532752960006 22.449048081858805 18-19 22.277135318223042 27.63856750839246 28.566789295047744 21.517507878336755 20-21 23.20908320922857 26.810765067675725 28.379043542149084 21.601108180946618 22-23 22.884697472851055 26.608930192102548 28.31303275290715 22.19333958213924 24-25 22.560488982652487 26.79303872609986 28.431472416359327 22.214999874888324 26-27 22.44858264743977 26.971099992807485 28.369198254352852 22.21111910539989 28-29 22.40447227413203 27.024849355452773 28.409616454945024 22.161061915470174 30-31 22.80975485116185 26.817152622542146 28.247093343464385 22.125999182831617 32-33 22.55589139878142 27.031431614489875 28.21403271357591 22.198644273152794 34-35 22.631403706343946 27.00574684809851 28.268486410465965 22.094363035091575 36-37 22.60363650014704 26.903748247086153 28.304053762765307 22.188561490001497 38-39 22.426605833617224 27.098813969195383 28.35279867693883 22.121781520248565 40-41 22.66040892235036 26.868062938991038 28.30817498436539 22.163353154293212 42-43 22.634627473959615 26.91439842581377 28.108052822669332 22.342921277557288 44-45 22.521546804315744 26.993153155756804 28.060339481404146 22.424960558523306 46-47 22.651127312174786 26.913406295295207 27.85134857031694 22.58411782221306 48-49 22.46941064626377 27.188863577936377 27.935655130011362 22.406070645788486 50-51 22.44907256708924 27.259973494941896 27.856546299392228 22.434407638576637 52-53 22.64800743511665 27.11931338331233 27.487451334643463 22.74522784692755 54-55 22.579269533276687 26.870577976108006 27.76135470333877 22.788797787276536 56-57 22.557854046880536 26.72923289127023 27.980109810377705 22.73280325147153 58-59 22.428086988367642 26.642302619202862 28.09083483871885 22.838775553710647 60-61 22.522807558815465 26.432112458925065 28.324342487488057 22.720737494771413 62-63 22.314639251363186 26.880873346813182 28.27940752045314 22.52507988137049 64-65 21.97351320758013 27.036757076425765 28.141053327792054 22.84867638820205 66-67 22.09984079837923 27.55852102125353 27.6365044958855 22.705133684481737 68-69 22.083672105956694 27.724541659583863 27.40331491712707 22.78847131733237 70-71 22.11899018234885 27.28584900901047 27.46129703761831 23.13386377102237 72-73 22.093505674545526 27.07125385798773 27.299853763486855 23.535386703979885 74-75 22.26272408299478 26.923513388707004 27.377718352425624 23.436044175872595 76-77 22.674337256987812 26.759534663066216 27.280246959199545 23.285881120746424 78-79 22.814460706761047 26.76480721138143 26.69701162875317 23.72372045310435 80-81 22.776286632751784 27.030434220440775 26.59463559850887 23.59864354829857 82-83 22.72308814607873 27.130382383393194 26.711850902883572 23.434678567644504 84-85 22.81331816675446 27.15518005810201 26.616468970663398 23.41503280448013 86-87 22.90614156953452 27.425432085846698 26.591799343286105 23.07662700133268 88-89 23.064756484673968 27.232973286914653 26.81174339618305 22.89052683222833 90-91 22.93851863609932 27.204454905612874 27.053484197090498 22.803542261197304 92-93 22.82547006774365 26.822297330927412 26.84344863816618 23.508783963162756 94-95 22.644757746628716 26.89693652584043 27.36480238362621 23.093503343904647 96-97 22.340415109343407 27.069202497765087 27.541791072217038 23.048591320674465 98-99 22.637236534189764 27.346154463847423 27.785686997190183 22.23092200477263 100-101 23.481476071436482 30.059042527902434 25.039344480463605 21.42013692019748 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2426.0 1 2462.5 2 3548.0 3 4944.0 4 6102.0 5 8283.5 6 10623.0 7 13970.0 8 17234.0 9 18857.5 10 18834.0 11 18267.5 12 19679.5 13 23625.0 14 32241.5 15 42446.0 16 49036.0 17 51427.5 18 49987.5 19 45493.5 20 39975.0 21 35667.0 22 34937.0 23 39367.5 24 48726.0 25 64099.0 26 85681.0 27 109667.0 28 134101.0 29 160369.0 30 185469.0 31 214348.5 32 250686.0 33 291245.0 34 330473.0 35 366540.0 36 408293.0 37 444604.5 38 470134.5 39 491098.0 40 517399.0 41 542783.5 42 557301.0 43 575072.5 44 594115.5 45 608429.0 46 617986.0 47 623384.5 48 625413.0 49 621376.0 50 612919.5 51 601288.5 52 581836.5 53 557713.5 54 531499.5 55 499389.0 56 461591.0 57 419508.5 58 377090.5 59 331119.0 60 277069.0 61 222880.5 62 172639.5 63 130257.0 64 97331.5 65 71903.0 66 53472.5 67 40172.5 68 30201.0 69 22007.0 70 15655.0 71 10978.0 72 7385.5 73 4681.5 74 2906.5 75 1714.0 76 1054.5 77 662.5 78 405.5 79 258.0 80 205.0 81 154.5 82 105.0 83 70.0 84 50.5 85 46.5 86 42.0 87 29.0 88 19.0 89 12.0 90 8.0 91 5.0 92 3.5 93 3.0 94 2.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.001520587855245663 4 0.0 5 0.062377595189637064 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 3.3493124564882448E-6 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 8.890763092144484E-5 44-45 0.0 46-47 0.003333384038655335 48-49 2.4078284995187482E-4 50-51 1.756278555333031E-5 52-53 8.894614385111601E-4 54-55 0.0011548306530902845 56-57 0.002208370458985243 58-59 0.005133078416363292 60-61 0.003085861528429695 62-63 0.005716190499434483 64-65 0.004273306755210254 66-67 0.00800453730496501 68-69 0.002322436662569416 70-71 0.00272122079783027 72-73 0.003304377089275952 74-75 0.0033047647709231 76-77 8.303668791110002E-4 78-79 3.2368734879040706E-4 80-81 0.0 82-83 1.086307562613313E-4 84-85 0.0017734482151946693 86-87 0.012272559560438484 88-89 0.0033315832214127514 90-91 0.0027529811299064886 92-93 1.466292979185564E-4 94-95 0.0010210543044438095 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 114.0 20-21 453.0 22-23 958.0 24-25 1205.0 26-27 2677.0 28-29 6596.0 30-31 22199.0 32-33 29298.0 34-35 39457.0 36-37 62288.0 38-39 45202.0 40-41 76403.0 42-43 84527.0 44-45 100703.0 46-47 103614.0 48-49 95734.0 50-51 89030.0 52-53 8263.0 54-55 7208.0 56-57 7186.0 58-59 7299.0 60-61 100570.0 62-63 99704.0 64-65 105578.0 66-67 111641.0 68-69 113052.0 70-71 113582.0 72-73 107607.0 74-75 110469.0 76-77 115921.0 78-79 120195.0 80-81 122498.0 82-83 116823.0 84-85 116307.0 86-87 121336.0 88-89 125810.0 90-91 129254.0 92-93 129812.0 94-95 141021.0 96-97 230180.0 98-99 1420070.0 100-101 1.0386593E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.77518820841995 #Duplication Level Percentage of deduplicated Percentage of total 1 88.7636578253999 73.47428482565265 2 7.724070066266021 12.787227069403853 3 1.8498206069567227 4.593577466779691 4 0.704637265788815 2.3330592917734236 5 0.34208381855829806 1.415802623210905 6 0.19769848396374218 0.9818717531170831 7 0.11083986299892815 0.6422353364512232 8 0.07773132034178515 0.5147379736784199 9 0.04518601132239729 0.3366252532439307 >10 0.17779202348126716 2.2860169863259494 >50 0.00455463141479564 0.257585078778928 >100 0.0018068854530062675 0.256555899790376 >500 6.06250080654072E-5 0.02899115150792651 >1k 6.057304633173009E-5 0.09142929028567492 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 6.6986249129764895E-6 0.0 2 0.0 6.6986249129764895E-6 0.0 1.3397249825952979E-5 0.0 3 0.0 6.6986249129764895E-6 0.0 1.3397249825952979E-5 0.0 4 0.0 6.698624912976488E-5 0.0 2.0095874738929467E-5 0.0 5 0.0 8.038349895571787E-5 0.0 2.0095874738929467E-5 0.0 6 4.6890374390835425E-5 8.038349895571787E-5 0.0 2.0095874738929467E-5 0.0 7 4.6890374390835425E-5 8.038349895571787E-5 0.0 4.6890374390835425E-5 0.0 8 4.6890374390835425E-5 8.038349895571787E-5 0.0 4.6890374390835425E-5 0.0 9 4.6890374390835425E-5 2.0765737230227116E-4 0.0 7.368487404274138E-5 0.0 10-11 4.6890374390835425E-5 2.1435599721524766E-4 0.0 9.043143632518261E-5 0.0 12-13 4.6890374390835425E-5 2.1435599721524766E-4 0.0 1.0717799860762383E-4 1.0047937369464733E-5 14-15 4.6890374390835425E-5 3.5837643284424215E-4 0.0 1.1052731106411207E-4 3.01438121083942E-5 16-17 6.02876242167884E-5 3.751229951266834E-4 0.0 1.1387662352060031E-4 3.349312456488244E-5 18-19 6.02876242167884E-5 4.0191749477858936E-4 0.0 1.1722593597708855E-4 4.6890374390835425E-5 20-21 6.02876242167884E-5 4.354106193434718E-4 0.0 1.440204356289945E-4 5.023968684732367E-5 22-23 6.02876242167884E-5 5.157941182991896E-4 0.0 1.7081493528090048E-4 6.02876242167884E-5 24-25 6.02876242167884E-5 5.660338051465133E-4 0.0 1.9426012247631818E-4 7.368487404274138E-5 26-27 6.02876242167884E-5 5.961776172549075E-4 0.0 2.411504968671536E-4 7.368487404274138E-5 28-29 6.02876242167884E-5 6.028762421678841E-4 0.0 5.425886179510957E-4 7.368487404274138E-5 30-31 6.363693667327665E-5 6.732118037541372E-4 0.0 0.0016612589784181693 7.368487404274138E-5 32-33 6.698624912976488E-5 6.832597411236019E-4 0.0 0.004561763565736989 8.038349895571787E-5 34-35 6.698624912976488E-5 7.770404899052727E-4 0.0 0.008446966015263353 9.378074878167085E-5 36-37 6.698624912976488E-5 8.842184885128966E-4 0.0 0.014241276564988015 9.378074878167085E-5 38-39 6.698624912976488E-5 9.210609255342673E-4 0.0 0.0342199253679404 1.038286861511356E-4 40-41 7.033556158625312E-5 0.0010081430494029617 0.0 0.2794699806818356 1.2392456089006505E-4 42-43 7.368487404274138E-5 0.0010483347988808206 0.0 0.2990500613024659 1.272738733465533E-4 44-45 7.703418649922963E-5 0.0011655607348579093 0.0 0.33398673953609476 1.272738733465533E-4 46-47 8.038349895571787E-5 0.0012526428587266035 0.0 0.37314355146489886 1.3397249825952977E-4 48-49 8.038349895571787E-5 0.0012559921711830916 0.0 0.41027068004507106 1.4067112317250627E-4 50-51 8.038349895571787E-5 0.0014167591690945275 0.0 0.4466341653851639 1.4067112317250627E-4 52-53 8.038349895571787E-5 0.0014268071064639921 0.0 0.6098696065770315 1.674656228244122E-4 54-55 8.038349895571787E-5 0.001440204356289945 0.0 1.180994366657407 2.0430805984578292E-4 56-57 8.038349895571787E-5 0.0014669988559418512 0.0 1.8039664835642204 2.177053096717359E-4 58-59 8.038349895571787E-5 0.0014736974808548277 0.0 2.446612461840446 2.2105462212822414E-4 60-61 1.0047937369464734E-4 0.001533985105071616 0.0 2.9281263671474784 2.3780118441066536E-4 62-63 1.0717799860762383E-4 0.001560779604723522 0.0 2.935963758295661 2.411504968671536E-4 64-65 1.0717799860762383E-4 0.0017550397271998402 0.0 2.941349452725694 2.411504968671536E-4 66-67 1.1722593597708855E-4 0.0017650876645693048 0.0 2.9469227086532905 2.4449980932364187E-4 68-69 1.272738733465533E-4 0.0018287246012425817 0.0 2.952057204649087 2.5119843423661835E-4 70-71 1.272738733465533E-4 0.0018555191008944876 0.0 2.9566223175272803 2.7464362143203607E-4 72-73 1.3397249825952977E-4 0.001875614975633417 0.0 2.960152492856419 3.0143812108394204E-4 74-75 1.4067112317250627E-4 0.001942601224763182 0.0 2.9632707027534098 3.0143812108394204E-4 76-77 1.4067112317250627E-4 0.0020698750981097353 0.0 2.9662817346517922 3.0143812108394204E-4 78-79 1.4067112317250627E-4 0.002110066847587594 0.0 2.969249225488241 3.0143812108394204E-4 80-81 1.4067112317250627E-4 0.002110066847587594 0.0 2.9704951697220547 3.1148605845340675E-4 82-83 1.4067112317250627E-4 0.002113416160044082 0.0 2.9711047445891356 3.315819331923362E-4 84-85 1.4067112317250627E-4 0.0021301627223265234 0.0 2.9715167100212834 3.4162987056180096E-4 86-87 1.4067112317250627E-4 0.002177053096717359 0.0 2.9717143194562166 3.4162987056180096E-4 88-89 1.4067112317250627E-4 0.0022775324704120063 0.0 2.9717779563928897 3.449791830182892E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 18815 0.0 53.71474 1 GTATCAA 33815 0.0 38.12183 1 TATCTCG 14645 0.0 34.5851 94-95 TCAACGC 41915 0.0 31.14521 4 ATCAACG 42710 0.0 30.659168 3 TATCAAC 43500 0.0 30.244843 2 CAACGCA 43540 0.0 30.01331 5 AACGCAG 45235 0.0 28.949509 6 CCGTCTT 7630 0.0 27.834005 92-93 TATGCCG 7550 0.0 27.232298 88-89 TGCCGTC 7975 0.0 26.241125 90-91 TCTCGTA 7245 0.0 25.547218 82-83 GCCGTCT 7940 0.0 25.075323 90-91 ACGCAGA 52795 0.0 24.762173 7 ATGCCGT 8005 0.0 24.598694 88-89 CGCAGAG 54150 0.0 24.126205 8 CTCGTAT 8525 0.0 23.681145 84-85 CGTATGC 8840 0.0 23.258951 86-87 TCGTATG 8730 0.0 22.363367 84-85 CTATCTC 23300 0.0 21.847795 94-95 >>END_MODULE