##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140346_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11120364 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.80086299333367 32.0 18.0 33.0 18.0 33.0 2 27.721734558329207 29.0 25.0 32.0 18.0 33.0 3 27.198927031525226 29.0 25.0 31.0 18.0 33.0 4 30.454322628288068 31.0 29.0 33.0 27.0 33.0 5 31.912760589491494 33.0 32.0 33.0 31.0 33.0 6 35.98927409210706 38.0 36.0 38.0 31.0 38.0 7 36.14162153325197 38.0 37.0 38.0 33.0 38.0 8 36.594526582043535 38.0 37.0 38.0 34.0 38.0 9 36.81383325222088 38.0 38.0 38.0 35.0 38.0 10-11 36.881617679061584 38.0 38.0 38.0 35.0 38.0 12-13 36.94421805797005 38.0 38.0 38.0 35.0 38.0 14-15 36.93940027502697 38.0 38.0 38.0 35.0 38.0 16-17 36.95835990620451 38.0 38.0 38.0 35.0 38.0 18-19 36.96878847670814 38.0 38.0 38.0 35.0 38.0 20-21 36.98043094849376 38.0 38.0 38.0 35.5 38.0 22-23 36.99088488881475 38.0 38.0 38.0 36.0 38.0 24-25 36.99488487644524 38.0 38.0 38.0 36.0 38.0 26-27 36.952286592623054 38.0 38.0 38.0 35.5 38.0 28-29 36.934282200473774 38.0 38.0 38.0 35.0 38.0 30-31 36.928711990108205 38.0 38.0 38.0 35.0 38.0 32-33 36.903759405206515 38.0 38.0 38.0 35.0 38.0 34-35 36.88406891909507 38.0 38.0 38.0 35.0 38.0 36-37 36.85665020332259 38.0 38.0 38.0 35.0 38.0 38-39 36.82659842541533 38.0 38.0 38.0 35.0 38.0 40-41 36.82833061372014 38.0 38.0 38.0 35.0 38.0 42-43 36.78825136337289 38.0 38.0 38.0 35.0 38.0 44-45 36.7470862241815 38.0 38.0 38.0 35.0 38.0 46-47 36.693499417683725 38.0 38.0 38.0 34.5 38.0 48-49 36.65335065775803 38.0 38.0 38.0 34.0 38.0 50-51 36.6224359576094 38.0 38.0 38.0 34.0 38.0 52-53 36.52754301867631 38.0 38.0 38.0 34.0 38.0 54-55 36.56253094164511 38.0 38.0 38.0 34.0 38.0 56-57 36.552021498185674 38.0 38.0 38.0 34.0 38.0 58-59 36.54056972597047 38.0 38.0 38.0 34.0 38.0 60-61 36.50769553406114 38.0 38.0 38.0 34.0 38.0 62-63 36.52305383388187 38.0 38.0 38.0 34.0 38.0 64-65 36.5273715244704 38.0 38.0 38.0 34.0 38.0 66-67 36.51989527797735 38.0 38.0 38.0 34.0 38.0 68-69 36.503058087993054 38.0 38.0 38.0 34.0 38.0 70-71 36.50134664543387 38.0 38.0 38.0 34.0 38.0 72-73 36.488820087417736 38.0 38.0 38.0 34.0 38.0 74-75 36.482387909810164 38.0 38.0 38.0 34.0 38.0 76-77 36.46950729295814 38.0 38.0 38.0 34.0 38.0 78-79 36.454422377183235 38.0 38.0 38.0 34.0 38.0 80-81 36.440217531668594 38.0 38.0 38.0 34.0 38.0 82-83 36.426286123077816 38.0 38.0 38.0 34.0 38.0 84-85 36.423985544534084 38.0 38.0 38.0 34.0 38.0 86-87 36.40495491062639 38.0 38.0 38.0 34.0 38.0 88-89 36.37973244628522 38.0 38.0 38.0 34.0 38.0 90-91 36.37357515114583 38.0 38.0 38.0 34.0 38.0 92-93 36.3793663355891 38.0 38.0 38.0 34.0 38.0 94-95 36.360067272029994 38.0 38.0 38.0 34.0 38.0 96-97 36.35839879792235 38.0 38.0 38.0 34.0 38.0 98-99 36.37626743474772 38.0 38.0 38.0 34.0 38.0 100-101 35.838483534298895 38.0 36.5 38.0 31.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 11.0 19 54.0 20 167.0 21 558.0 22 2065.0 23 6214.0 24 14316.0 25 26944.0 26 45090.0 27 68817.0 28 98989.0 29 133181.0 30 172563.0 31 217726.0 32 276548.0 33 361677.0 34 509731.0 35 827134.0 36 2017978.0 37 6340599.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.34470274534179 19.016778587463502 13.620426453666445 22.018092213528263 2 14.992431902408951 20.402902279098058 40.21221787344371 24.39244794504928 3 20.068748392573553 25.596892518700106 29.366282802740223 24.96807628598612 4 13.061793660711107 17.89087119810107 39.14912317618381 29.898211965004023 5 13.879217666078342 38.21195727525327 34.2027491974737 13.70607586119469 6 30.01999754684289 37.512656959790164 18.659497117180695 13.807848376186246 7 26.816109616555718 33.03073532485088 22.40949127204829 17.743663786545117 8 24.598987946797422 36.48261873442272 20.882535859437695 18.035857459342157 9 25.88467427864771 17.208546410890865 20.923298913596714 35.98348039686471 10-11 24.53586051679603 26.71503828471802 28.32209898884605 20.427002209639898 12-13 25.41133545628542 24.175044989534516 28.553692127344032 21.85992742683603 14-15 22.602600958026194 25.514555998346815 26.241708454867123 25.64113458875986 16-17 22.011871375062128 28.747289994040663 26.90319101993343 22.337647610963778 18-19 22.04115350900384 27.74181672470434 28.77502930659464 21.442000459697184 20-21 22.895907724328545 26.86110336117092 28.711337946427467 21.53165096807307 22-23 22.551497589685006 26.82620380177132 28.66281049842075 21.959488110122926 24-25 22.361564398276634 26.96959825328532 28.823153143421763 21.845684205016283 26-27 22.281205200482585 27.133881056332566 28.76572080069352 21.819192942491334 28-29 22.216220561641165 27.14695236630401 28.773541341182046 21.86328573087277 30-31 22.482656621129784 27.05157922721593 28.725354720342093 21.740409431312187 32-33 22.302016860181812 27.19468871504746 28.64957138289937 21.853723041871362 34-35 22.433640411898605 27.101000713366503 28.725994431505956 21.739364443228936 36-37 22.276249922872 27.12245952370185 28.687921354837997 21.91336919858815 38-39 22.123270928198686 27.152825359254702 28.788729365557366 21.935174346989246 40-41 22.382835452955202 26.979406953708086 28.710272263605013 21.927485329731702 42-43 22.36632690077013 26.944617886897348 28.610475223357263 22.078579988975264 44-45 22.271044875486872 27.175630270184286 28.478902812333207 22.074422041995632 46-47 22.453644890799925 27.041478522266054 28.160553495225432 22.344323091708585 48-49 22.308505827444485 27.168884001501304 28.24088668010823 22.281723490945986 50-51 22.23997232560547 27.3348369929548 28.19401676361808 22.23117391782165 52-53 22.428355792010624 27.272627795185468 28.087435905429942 22.211580507373966 54-55 22.390933884479267 27.192057257601576 28.07067832353965 22.34633053437951 56-57 22.43393909618529 27.43630766627264 27.917325350531936 22.21242788701013 58-59 22.251494301851558 27.576218159927517 28.107316326415265 22.06497121180566 60-61 22.401870853322674 27.67459979924858 27.91872385963859 22.00480548779016 62-63 22.249742785413186 27.82150563089821 27.86470352777331 22.064048055915293 64-65 22.21001464860063 27.769796277884957 27.851552393194094 22.168636680320322 66-67 22.341178844114186 27.763790442231723 27.69525842015194 22.19977229350215 68-69 22.2681732459968 27.622286478634322 27.844906335119685 22.264633940249194 70-71 22.304797298595478 27.29618261678227 27.957785189634038 22.441234894988213 72-73 22.395607311050945 27.3117569518776 27.868169649578324 22.424466087493133 74-75 22.210404281385653 27.458174013414382 27.891414528053254 22.440007177146708 76-77 22.43408617792176 27.352100835539666 27.783319661804985 22.43049332473359 78-79 22.414923199560402 27.45251744699166 27.67276351394917 22.459795839498764 80-81 22.46510037006106 27.41883135694297 27.657341130743045 22.458727142252926 82-83 22.448559435857916 27.399900601671128 27.7954606984294 22.35607926404155 84-85 22.623271309474653 27.381332771353573 27.669790385366028 22.325605533805746 86-87 22.402971940239347 27.45749470748338 27.735153320998595 22.404380031278677 88-89 22.46258814419138 27.477268793119602 27.698940615515767 22.361202447173252 90-91 22.52509585974487 27.451619668702303 27.739848758840523 22.2834357127123 92-93 22.600864508721262 27.398261361702765 27.710054151512825 22.290819978063148 94-95 22.418886571044062 27.558820699837195 27.697979048231407 22.324313680887332 96-97 22.461787154468386 27.563298724731467 27.71503770135495 22.259876419445202 98-99 22.63096230799398 28.166812370478773 27.752184859011543 21.45004046251571 100-101 23.336952648362587 30.666531711306895 25.088746784108274 20.90776885622225 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2274.0 1 1942.0 2 2515.0 3 3834.5 4 4663.0 5 6295.5 6 8417.5 7 11087.5 8 15221.0 9 18290.5 10 17522.5 11 15709.0 12 16401.0 13 19557.5 14 25792.0 15 33141.5 16 39351.5 17 43667.0 18 43960.0 19 40678.0 20 36264.0 21 32454.0 22 31399.5 23 34735.5 24 42407.0 25 54771.5 26 71238.5 27 89736.0 28 109556.0 29 130960.0 30 151787.0 31 174667.0 32 201468.5 33 230402.0 34 259314.5 35 285678.0 36 314321.0 37 340563.0 38 359308.5 39 374494.5 40 393809.5 41 410593.0 42 418919.5 43 430291.0 44 454847.0 45 472270.5 46 469200.5 47 463366.5 48 456344.5 49 447221.0 50 438102.5 51 427802.0 52 411565.0 53 391394.0 54 370700.0 55 346938.5 56 320471.0 57 290971.0 58 261319.5 59 230219.5 60 193021.0 61 155816.0 62 121846.0 63 92970.0 64 70276.0 65 52061.0 66 38683.0 67 29541.5 68 22447.5 69 16379.0 70 11764.5 71 8253.0 72 5578.0 73 3638.5 74 2331.5 75 1451.5 76 906.5 77 547.5 78 352.5 79 230.0 80 149.0 81 100.0 82 73.0 83 56.0 84 42.0 85 38.0 86 33.5 87 26.5 88 22.0 89 16.5 90 10.0 91 5.0 92 2.5 93 1.0 94 0.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 9.35221185205808E-4 4 0.0 5 0.05193175331311097 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 8.992511396209692E-6 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 4.563495078658455E-6 42-43 7.792299109143112E-5 44-45 0.0 46-47 0.0031763755560975746 48-49 2.6595629274285066E-4 50-51 9.384967421962589E-6 52-53 8.489821576494779E-4 54-55 0.0010284589765013237 56-57 0.001958087587782829 58-59 0.005153655570277853 60-61 0.0030353179478687514 62-63 0.0056223903747778785 64-65 0.004052769694997624 66-67 0.007574250867539075 68-69 0.002054240157108287 70-71 0.0025400502041671397 72-73 0.0032634143047265657 74-75 0.003138005165055276 76-77 8.408734626603513E-4 78-79 3.696165351653172E-4 80-81 0.0 82-83 5.7347161993220526E-5 84-85 0.0012606565530844877 86-87 0.008622490684507725 88-89 0.002198420466910357 90-91 0.0019158934610394723 92-93 1.1944613478823069E-4 94-95 7.231798877098866E-4 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 127.0 20-21 453.0 22-23 1126.0 24-25 1045.0 26-27 2113.0 28-29 4798.0 30-31 13566.0 32-33 18063.0 34-35 24904.0 36-37 39674.0 38-39 46519.0 40-41 47146.0 42-43 54276.0 44-45 66291.0 46-47 68334.0 48-49 62292.0 50-51 56344.0 52-53 50434.0 54-55 53960.0 56-57 54840.0 58-59 60240.0 60-61 62002.0 62-63 63114.0 64-65 72287.0 66-67 77101.0 68-69 75483.0 70-71 83846.0 72-73 64915.0 74-75 66472.0 76-77 70391.0 78-79 73759.0 80-81 75285.0 82-83 72419.0 84-85 72250.0 86-87 74608.0 88-89 79051.0 90-91 81515.0 92-93 81805.0 94-95 89181.0 96-97 156417.0 98-99 972401.0 100-101 7929517.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.89962961113447 #Duplication Level Percentage of deduplicated Percentage of total 1 89.95668850372793 76.372895350107 2 6.9588586016786165 11.816090355975433 3 1.6791939724874427 4.276888389283002 4 0.6176274460161355 2.0974536561776342 5 0.2959292461789297 1.2562141695846682 6 0.15904701275713515 0.8101819484302892 7 0.09716662097847327 0.5774587092146508 8 0.06286198431742336 0.426956734813615 9 0.040016803491991146 0.3057670615222441 >10 0.12906498669069003 1.6806946881148044 >50 0.0025665694218155646 0.1475661883225432 >100 8.711584115065805E-4 0.11641037120769472 >500 5.3549730803297616E-5 0.030505428922444358 >1k 5.3544111127438504E-5 0.08491694832394943 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 8.992511396209692E-6 2 0.0 2.6977534188629077E-5 0.0 8.992511396209692E-6 8.992511396209692E-6 3 0.0 2.6977534188629077E-5 0.0 8.992511396209692E-6 8.992511396209692E-6 4 0.0 5.3955068377258155E-5 0.0 8.992511396209692E-6 8.992511396209692E-6 5 0.0 5.3955068377258155E-5 0.0 1.7985022792419385E-5 8.992511396209692E-6 6 4.496255698104846E-5 5.3955068377258155E-5 0.0 1.7985022792419385E-5 8.992511396209692E-6 7 4.496255698104846E-5 5.3955068377258155E-5 0.0 1.7985022792419385E-5 8.992511396209692E-6 8 4.496255698104846E-5 6.294757977346785E-5 0.0 1.7985022792419385E-5 8.992511396209692E-6 9 4.496255698104846E-5 1.16902648150726E-4 0.0 1.7985022792419385E-5 8.992511396209692E-6 10-11 4.496255698104846E-5 1.16902648150726E-4 0.0 2.248127849052423E-5 8.992511396209692E-6 12-13 4.496255698104846E-5 1.16902648150726E-4 0.0 2.6977534188629077E-5 8.992511396209692E-6 14-15 4.496255698104846E-5 2.3830155199955686E-4 0.0 2.6977534188629077E-5 1.3488767094314539E-5 16-17 7.194009116967754E-5 2.517903190938714E-4 0.0 2.6977534188629077E-5 2.6977534188629077E-5 18-19 7.194009116967754E-5 2.7876785328250045E-4 0.0 3.597004558483877E-5 3.597004558483877E-5 20-21 7.194009116967754E-5 3.102416431692344E-4 0.0 3.597004558483877E-5 3.597004558483877E-5 22-23 7.194009116967754E-5 3.776854786408071E-4 0.0 3.597004558483877E-5 4.496255698104846E-5 24-25 7.194009116967754E-5 4.181517799237507E-4 0.0 4.496255698104846E-5 5.8451324075363E-5 26-27 7.194009116967754E-5 4.4512931411237977E-4 0.0 1.1690264815072599E-4 7.194009116967754E-5 28-29 7.194009116967754E-5 4.496255698104846E-4 0.0 3.2822666596165375E-4 7.194009116967754E-5 30-31 7.194009116967754E-5 5.125731495839524E-4 0.0 0.0012184852941864133 7.643634686778239E-5 32-33 7.194009116967754E-5 5.125731495839524E-4 0.0 0.0033991693077672636 9.891762535830662E-5 34-35 7.643634686778239E-5 6.024982635460494E-4 0.0 0.00613289277221501 9.891762535830662E-5 36-37 8.093260256588723E-5 6.879271218100415E-4 0.0 0.010435809475301348 9.891762535830662E-5 38-39 9.442136966020178E-5 6.969196332062512E-4 0.0 0.01844364087362608 1.0791013675451631E-4 40-41 9.891762535830662E-5 7.643634686778239E-4 0.0 0.03959852393320938 1.0791013675451631E-4 42-43 1.0791013675451631E-4 8.138222813569772E-4 0.0 0.04728712117696866 1.1240639245262116E-4 44-45 1.0791013675451631E-4 9.217324181114934E-4 0.0 0.05754308042434582 1.2139890384883084E-4 46-47 1.0791013675451631E-4 9.711912307906467E-4 0.0 0.0685544106290046 1.3039141524504055E-4 48-49 1.0791013675451631E-4 9.801837421868566E-4 0.0 0.07964667343622925 1.3488767094314537E-4 50-51 1.1240639245262116E-4 0.0011330564359224213 0.0 0.09013643797990786 1.3488767094314537E-4 52-53 1.16902648150726E-4 0.0011600339701110503 0.0 0.10718623958712142 1.4388018233935508E-4 54-55 1.16902648150726E-4 0.0011780189929034698 0.0 0.14608334763142644 1.573689494336696E-4 56-57 1.16902648150726E-4 0.0012049965270920988 0.0 0.1882447373125556 1.7085771652798414E-4 58-59 1.16902648150726E-4 0.0012229815498845183 0.0 0.23544193337556218 1.7985022792419385E-4 60-61 1.2139890384883084E-4 0.0012724403625636715 0.0 0.24931737845991372 1.7985022792419385E-4 62-63 1.3938392664125023E-4 0.0012814328739598813 0.0 0.26035118994306305 1.8884273932040353E-4 64-65 1.4388018233935508E-4 0.0014477943347897604 0.0 0.26656051906214584 1.9333899501850838E-4 66-67 1.4388018233935508E-4 0.0014522905904878654 0.0 0.2710073159475715 1.9783525071661323E-4 68-69 1.4388018233935508E-4 0.0014837643803745993 0.0 0.2752922476278654 1.9783525071661323E-4 70-71 1.483764380374599E-4 0.001492756891770809 0.0 0.2794692691714048 2.1582027350903262E-4 72-73 1.8884273932040353E-4 0.001492756891770809 0.0 0.2828324684335872 2.517903190938714E-4 74-75 1.8884273932040353E-4 0.0015152381702613332 0.0 0.2854133192042994 2.517903190938714E-4 76-77 1.8884273932040353E-4 0.0015826820057329059 0.0 0.2879941699750116 2.517903190938714E-4 78-79 1.8884273932040353E-4 0.001609659539921535 0.0 0.29034571170512047 2.517903190938714E-4 80-81 1.8884273932040353E-4 0.001609659539921535 0.0 0.2912989179131187 2.607828304900811E-4 82-83 1.8884273932040353E-4 0.00161415579561964 0.0 0.2916810996474576 2.7876785328250045E-4 84-85 1.8884273932040353E-4 0.0016186520513177447 0.0 0.29209925142738136 2.7876785328250045E-4 86-87 1.8884273932040353E-4 0.0016456295855063737 0.0 0.2922386353540226 2.7876785328250045E-4 88-89 1.8884273932040353E-4 0.0017355546994684706 0.0 0.2923105754451923 2.7876785328250045E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15230 0.0 52.56554 1 GTATCAA 28200 0.0 39.625504 1 TCAACGC 33040 0.0 33.833736 4 ATCAACG 33170 0.0 33.541485 3 CAACGCA 33880 0.0 32.98182 5 TATCAAC 33885 0.0 32.611706 2 AACGCAG 35120 0.0 31.912489 6 ACGCAGA 40865 0.0 27.317844 7 CGCAGAG 41980 0.0 26.613346 8 GTGGTAT 7195 0.0 26.448444 1 TGGTATC 6885 0.0 25.710976 2 GCAGAGT 49380 0.0 22.544504 9 GAGTACT 27900 0.0 21.234842 12-13 TACATGG 38015 0.0 20.30271 2 GTACATG 38695 0.0 20.231844 1 CTTATAC 10150 0.0 20.187263 1 CAGAGTA 47800 0.0 19.847687 10-11 ACATGGG 38610 0.0 19.74913 3 GTACTTT 30300 0.0 19.356117 14-15 TATACAC 13640 0.0 18.461218 3 >>END_MODULE