##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140345_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11064103 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.409461571353773 32.0 18.0 33.0 18.0 33.0 2 27.331718893072487 29.0 25.0 32.0 18.0 33.0 3 26.82962622455702 29.0 25.0 31.0 18.0 33.0 4 30.29903626168339 31.0 29.0 33.0 27.0 33.0 5 31.8629439729547 33.0 32.0 33.0 30.0 33.0 6 35.964046791682975 38.0 36.0 38.0 31.0 38.0 7 36.12680910508516 38.0 37.0 38.0 33.0 38.0 8 36.58872843103503 38.0 37.0 38.0 34.0 38.0 9 36.81216461921947 38.0 38.0 38.0 35.0 38.0 10-11 36.87864958415517 38.0 38.0 38.0 35.0 38.0 12-13 36.94377411345502 38.0 38.0 38.0 35.0 38.0 14-15 36.93636185418737 38.0 38.0 38.0 35.0 38.0 16-17 36.95044008538243 38.0 38.0 38.0 35.0 38.0 18-19 36.96179740011459 38.0 38.0 38.0 35.0 38.0 20-21 36.97370114094953 38.0 38.0 38.0 35.0 38.0 22-23 36.98156493805709 38.0 38.0 38.0 35.5 38.0 24-25 36.984217102783774 38.0 38.0 38.0 36.0 38.0 26-27 36.94123417602397 38.0 38.0 38.0 35.0 38.0 28-29 36.925187179951905 38.0 38.0 38.0 35.0 38.0 30-31 36.92138577531743 38.0 38.0 38.0 35.0 38.0 32-33 36.899294122722196 38.0 38.0 38.0 35.0 38.0 34-35 36.88429843093859 38.0 38.0 38.0 35.0 38.0 36-37 36.85761428952078 38.0 38.0 38.0 35.0 38.0 38-39 36.83270066432435 38.0 38.0 38.0 35.0 38.0 40-41 36.82592391547247 38.0 38.0 38.0 35.0 38.0 42-43 36.78583173129221 38.0 38.0 38.0 35.0 38.0 44-45 36.749844454673806 38.0 38.0 38.0 35.0 38.0 46-47 36.70204891345193 38.0 38.0 38.0 34.5 38.0 48-49 36.66501170415664 38.0 38.0 38.0 34.0 38.0 50-51 36.63728108807296 38.0 38.0 38.0 34.0 38.0 52-53 36.53932699253147 38.0 38.0 38.0 34.0 38.0 54-55 36.57482299562205 38.0 38.0 38.0 34.0 38.0 56-57 36.56451376259885 38.0 38.0 38.0 34.0 38.0 58-59 36.551676735667854 38.0 38.0 38.0 34.0 38.0 60-61 36.51529100082303 38.0 38.0 38.0 34.0 38.0 62-63 36.53053691425765 38.0 38.0 38.0 34.0 38.0 64-65 36.53492417800659 38.0 38.0 38.0 34.0 38.0 66-67 36.527424122876084 38.0 38.0 38.0 34.0 38.0 68-69 36.50987891763418 38.0 38.0 38.0 34.0 38.0 70-71 36.50832889894262 38.0 38.0 38.0 34.0 38.0 72-73 36.49304312303197 38.0 38.0 38.0 34.0 38.0 74-75 36.48555713681815 38.0 38.0 38.0 34.0 38.0 76-77 36.46952162175451 38.0 38.0 38.0 34.0 38.0 78-79 36.455183347007974 38.0 38.0 38.0 34.0 38.0 80-81 36.4401802686481 38.0 38.0 38.0 34.0 38.0 82-83 36.42408978781252 38.0 38.0 38.0 34.0 38.0 84-85 36.420554463104985 38.0 38.0 38.0 34.0 38.0 86-87 36.39887384096309 38.0 38.0 38.0 34.0 38.0 88-89 36.371532054268016 38.0 38.0 38.0 34.0 38.0 90-91 36.36621979238195 38.0 38.0 38.0 34.0 38.0 92-93 36.369202540762174 38.0 38.0 38.0 34.0 38.0 94-95 36.35083861759912 38.0 38.0 38.0 34.0 38.0 96-97 36.347169563316655 38.0 37.5 38.0 34.0 38.0 98-99 36.36345345359382 38.0 37.5 38.0 34.0 38.0 100-101 35.8139865126639 38.0 36.0 38.0 31.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 9.0 19 32.0 20 120.0 21 485.0 22 2050.0 23 6292.0 24 14261.0 25 27004.0 26 45129.0 27 68016.0 28 97041.0 29 130583.0 30 168623.0 31 215064.0 32 275224.0 33 363300.0 34 511118.0 35 833321.0 36 2067105.0 37 6239325.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.51917132369429 18.964781871607666 13.684887062240833 21.831159742457206 2 14.885110885175237 20.33920870042515 40.35143201396444 24.42424840043517 3 20.2256034336899 25.294874844721843 29.38500812001718 25.094513601571073 4 13.058853483196966 17.947157577979887 39.564355104069435 29.42963383475371 5 13.889942861235308 38.15413251404416 34.49770551526347 13.458219109457067 6 30.02885096062464 37.77339202283276 18.742640049536778 13.45511696700582 7 26.739772758803852 32.91359453179349 22.698921006068 17.647711703334647 8 24.205812256086194 36.969910710339555 21.0125484189726 17.811728614601655 9 25.46707130257193 17.46717289237094 21.277893020337935 35.787862784719195 10-11 24.251107387557763 26.86700855912133 28.709051244371096 20.17283280894981 12-13 25.05469263979195 24.31040275022747 28.917540807420178 21.717363802560406 14-15 22.23487073466326 25.79252018893895 26.498158052216255 25.474451024181537 16-17 21.772898674731913 29.003535849862544 27.218298169910053 22.005267305495494 18-19 21.770395666056256 28.104849530052277 28.957367804692346 21.167386999199124 20-21 22.485339413871205 27.271318107615162 28.97004487599279 21.273297602520838 22-23 22.20398037201624 27.20829279421457 28.838177780621994 21.74954905314719 24-25 22.015586808116748 27.34650026756917 28.94559215950015 21.69232076481393 26-27 21.949231507900354 27.515577273791987 28.8587897066456 21.67640151166206 28-29 21.890298644413598 27.52118766388387 28.934491300978376 21.654022390724155 30-31 22.224972605862288 27.323197717253954 28.847778796053035 21.604050880830716 32-33 21.956076009241283 27.48528853102339 28.817264560789983 21.74137089894535 34-35 22.07053060603849 27.47487463799696 28.822902040381397 21.631692715583156 36-37 22.0197370210016 27.45450687777305 28.826801147312565 21.698954953912786 38-39 21.86560206349011 27.524583123976893 28.912062992672183 21.69775181986082 40-41 22.126448090170488 27.363998169475945 28.825874766333985 21.68367897401958 42-43 22.03678112631072 27.38694129657383 28.718475500572037 21.85780207654341 44-45 22.040672883659237 27.545576052002584 28.594258935817173 21.81949212852101 46-47 22.13813943376886 27.48670432089687 28.351506025021024 22.023650220313247 48-49 22.050935220696363 27.581732678988423 28.39711075125988 21.970221349055326 50-51 22.024067808729555 27.714762454933428 28.341248993293643 21.919920743043377 52-53 22.17930998618365 27.646873474617035 28.21493465894653 21.958881880252783 54-55 22.13602553759259 27.586024433230882 28.258217341708747 22.019732687467773 56-57 22.14380969623219 27.744799669690558 28.17913768151646 21.932252952560795 58-59 22.04047599494356 27.812438098237706 28.276636218819213 21.870449687999518 60-61 22.16322278275551 27.836210038712466 28.207453729937388 21.79311344859463 62-63 22.028565705132095 27.956126244756156 28.16499155265576 21.850316497455992 64-65 22.005082345770926 27.862579855753584 28.163721173730323 21.96861662474517 66-67 22.099153177871386 27.906283929689646 28.025915044063677 21.96864784837529 68-69 22.011167354529622 27.82275991662973 28.142291817024017 22.023780911816633 70-71 22.025435486672524 27.610113612851165 28.186982379657593 22.177468520818717 72-73 22.107700845461288 27.62895797194165 28.11390695892655 22.149434223670514 74-75 21.97265263624898 27.743987577707575 28.119869500412815 22.163490285630626 76-77 22.155264359569813 27.671028498964677 28.01909424729586 22.15461289416965 78-79 22.13713902375219 27.713125927593723 27.951750541824183 22.197984506829904 80-81 22.128598722156653 27.756694353737426 27.92793472214467 22.186772201961254 82-83 22.158734233334652 27.74837853976897 28.023581639656687 22.069305587239697 84-85 22.266982332934372 27.731719955929208 27.967169323933394 22.03412838720303 86-87 22.128817428495168 27.766530787003816 27.992265446968993 22.112386337532016 88-89 22.17357029849138 27.78796194261357 27.965546819179384 22.07292093971567 90-91 22.231226889254447 27.82105758122674 27.95098470518132 21.996730824337497 92-93 22.26843085444346 27.771208012619436 27.93822966688077 22.022131466056337 94-95 22.122826003325912 27.86278596821322 27.966343707431545 22.04804432102932 96-97 22.17990985059106 27.829090954069834 27.995241390537075 21.995757804802036 98-99 22.35252323206357 28.43588557315871 28.055369652073914 21.1562215427038 100-101 22.980778953768194 30.983494329272503 25.43944687992984 20.596279837029467 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1760.0 1 1547.5 2 2144.0 3 3271.0 4 3976.5 5 5375.0 6 7152.0 7 9424.5 8 12742.5 9 15122.0 10 14803.0 11 13841.5 12 14478.0 13 17087.0 14 22633.0 15 29231.5 16 34962.0 17 39342.0 18 40395.5 19 38058.0 20 34922.0 21 32513.5 22 32862.0 23 37527.5 24 46178.5 25 59443.5 26 76124.5 27 95055.5 28 117090.0 29 140991.5 30 164431.0 31 190046.0 32 218291.0 33 246707.0 34 274726.5 35 300224.0 36 327225.5 37 353327.0 38 373640.5 39 389441.0 40 405867.5 41 422902.0 42 433884.5 43 442477.0 44 456082.0 45 466512.5 46 466150.5 47 461808.5 48 453990.0 49 443246.5 50 432064.0 51 417101.0 52 396100.5 53 372763.5 54 348921.0 55 322374.5 56 294828.0 57 265174.5 58 234820.0 59 203599.5 60 168759.5 61 135507.0 62 106284.5 63 81462.5 64 61052.5 65 45107.5 66 33259.5 67 25216.5 68 19358.5 69 14310.0 70 10390.0 71 7556.0 72 5431.5 73 3713.0 74 2463.0 75 1602.0 76 1002.0 77 586.0 78 372.5 79 228.5 80 140.5 81 90.5 82 60.5 83 45.5 84 34.5 85 27.0 86 24.5 87 21.0 88 15.0 89 8.5 90 4.5 91 2.5 92 2.0 93 2.0 94 1.5 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 7.863267361122723E-4 4 0.0 5 0.048905907690844894 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 1.8076476692236145E-5 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 1.65614577063844E-4 44-45 0.0 46-47 0.0029906302113649995 48-49 2.947631398038646E-4 50-51 4.704235095842439E-6 52-53 7.564069440993994E-4 54-55 9.262302712952214E-4 56-57 0.001866740597869748 58-59 0.00488590570269187 60-61 0.0026982488895668033 62-63 0.005379133254627098 64-65 0.003779751072626452 66-67 0.007383302528609068 68-69 0.001905858321363553 70-71 0.002288970850779048 72-73 0.0031541382670752516 74-75 0.0027550636680048184 76-77 6.921771965479902E-4 78-79 3.178370511980637E-4 80-81 0.0 82-83 3.122871080230774E-5 84-85 0.0011797234791083556 86-87 0.008405038099229425 88-89 0.0021034740978199593 90-91 0.0020674922924155846 92-93 9.749916800709967E-5 94-95 6.775934067975734E-4 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 102.0 20-21 409.0 22-23 862.0 24-25 917.0 26-27 1871.0 28-29 4123.0 30-31 12143.0 32-33 16416.0 34-35 22974.0 36-37 36826.0 38-39 42874.0 40-41 44031.0 42-43 51213.0 44-45 62608.0 46-47 64934.0 48-49 59472.0 50-51 53894.0 52-53 49057.0 54-55 52825.0 56-57 54137.0 58-59 58620.0 60-61 60043.0 62-63 59327.0 64-65 66103.0 66-67 70573.0 68-69 70849.0 70-71 75375.0 72-73 64650.0 74-75 65619.0 76-77 69676.0 78-79 73268.0 80-81 73892.0 82-83 70818.0 84-85 70743.0 86-87 74406.0 88-89 77723.0 90-91 80234.0 92-93 79637.0 94-95 87866.0 96-97 155549.0 98-99 969774.0 100-101 7957670.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.02945508481942 #Duplication Level Percentage of deduplicated Percentage of total 1 90.02200677265982 76.54522181521189 2 6.884631902696714 11.707929982917301 3 1.699726970815847 4.335805743643267 4 0.6119063108603282 2.081202407016633 5 0.2886129196820296 1.2270299645500866 6 0.1628942082298733 0.831048345735554 7 0.09511898666440084 0.5661540923005947 8 0.06169666365539354 0.41968269529355967 9 0.03926809448016533 0.30050502082808966 >10 0.13104930465719206 1.6893753846146862 >50 0.002385843623306796 0.1365139068888526 >100 6.139157872333635E-4 0.0841985437089356 >500 7.048670718612635E-5 0.0464922316495639 >1k 1.761948064938094E-5 0.02883986564101685 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.8076476692236145E-5 0.0 9.038238346118072E-6 0.0 3 0.0 2.7114715038354215E-5 0.0 9.038238346118072E-6 0.0 4 0.0 7.230590676894458E-5 0.0 9.038238346118072E-6 0.0 5 0.0 8.134414511506265E-5 0.0 9.038238346118072E-6 0.0 6 0.0 8.134414511506265E-5 0.0 9.038238346118072E-6 9.038238346118072E-6 7 0.0 8.134414511506265E-5 0.0 2.7114715038354215E-5 9.038238346118072E-6 8 0.0 9.038238346118073E-5 0.0 2.7114715038354215E-5 9.038238346118072E-6 9 0.0 1.1749709849953493E-4 0.0 3.615295338447229E-5 9.038238346118072E-6 10-11 0.0 1.1749709849953493E-4 0.0 4.519119173059036E-5 9.038238346118072E-6 12-13 1.8076476692236145E-5 1.1749709849953493E-4 0.0 4.971031090364939E-5 1.3557357519177108E-5 14-15 2.2595595865295178E-5 1.7172652857624338E-4 0.0 5.874854924976747E-5 2.7114715038354215E-5 16-17 4.519119173059036E-5 1.7624564774930242E-4 0.0 6.32676684228265E-5 4.519119173059036E-5 18-19 4.519119173059036E-5 1.9432212444153854E-4 0.0 8.134414511506265E-5 7.230590676894458E-5 20-21 4.519119173059036E-5 2.0787948196071565E-4 0.0 9.038238346118073E-5 7.230590676894458E-5 22-23 4.519119173059036E-5 2.395133161721289E-4 0.0 1.1749709849953493E-4 8.134414511506265E-5 24-25 4.519119173059036E-5 2.892236270757783E-4 0.0 1.5365005188400723E-4 9.038238346118073E-5 26-27 4.519119173059036E-5 2.982618654218964E-4 0.0 1.8076476692236142E-4 9.038238346118073E-5 28-29 4.519119173059036E-5 2.982618654218964E-4 0.0 3.7508689136389996E-4 9.490150263423975E-5 30-31 4.519119173059036E-5 3.344148188063687E-4 0.0 0.0011026650782264048 9.942062180729879E-5 32-33 4.971031090364939E-5 3.344148188063687E-4 0.0 0.0026030126436820044 1.0845886015341686E-4 34-35 5.874854924976747E-5 3.9768248722919515E-4 0.0 0.004659211867423866 1.26535336845653E-4 36-37 6.32676684228265E-5 4.6998839399813974E-4 0.0 0.00787230559946884 1.26535336845653E-4 38-39 6.32676684228265E-5 4.8354575151731685E-4 0.0 0.014415990162058325 1.3105445601871205E-4 40-41 6.32676684228265E-5 5.603707774593205E-4 0.0 0.033125143538522736 1.3557357519177108E-4 42-43 6.32676684228265E-5 5.739281349784976E-4 0.0 0.03934345152065197 1.4009269436483012E-4 44-45 6.32676684228265E-5 6.100810883629699E-4 0.0 0.04768122639494589 1.4461181353788916E-4 46-47 6.32676684228265E-5 6.326766842282651E-4 0.0 0.05755550178807989 1.4461181353788916E-4 48-49 6.32676684228265E-5 6.326766842282651E-4 0.0 0.06725353153346458 1.626882902301253E-4 50-51 6.32676684228265E-5 7.682502594200361E-4 0.0 0.07656743614913925 1.626882902301253E-4 52-53 6.32676684228265E-5 7.953649744583903E-4 0.0 0.09261934745184494 1.7624564774930242E-4 54-55 6.32676684228265E-5 7.953649744583903E-4 0.0 0.12927392306452679 1.9432212444153854E-4 56-57 6.32676684228265E-5 8.044032128045084E-4 0.0 0.17055607671042108 1.9884124361459757E-4 58-59 6.32676684228265E-5 8.134414511506264E-4 0.0 0.21920891372757467 1.9884124361459757E-4 60-61 6.778678759588554E-5 8.405561661889807E-4 0.0 0.23238214611704178 1.9884124361459757E-4 62-63 8.134414511506265E-5 8.586326428812168E-4 0.0 0.2405843474161439 2.0787948196071565E-4 64-65 8.134414511506265E-5 9.490150263423975E-4 0.0 0.24698342016519548 2.0787948196071565E-4 66-67 8.134414511506265E-5 0.001003244456419106 0.0 0.25127658337960157 2.1239860113377468E-4 68-69 9.038238346118073E-5 0.0010258400522844013 0.0 0.25558330395152684 2.1691772030683372E-4 70-71 9.038238346118073E-5 0.0010439165289766374 0.0 0.25965051120728 2.1691772030683372E-4 72-73 1.0845886015341686E-4 0.0010484356481496964 0.0 0.26284100934345966 2.4403243534518794E-4 74-75 1.0845886015341686E-4 0.0010574738864958144 0.0 0.2656473823499293 2.4403243534518794E-4 76-77 1.0845886015341686E-4 0.0010755503631880506 0.0 0.2681690508484963 2.48551554518247E-4 78-79 1.0845886015341686E-4 0.0010800694823611097 0.0 0.27046476338841025 2.53070673691306E-4 80-81 1.0845886015341686E-4 0.0010845886015341687 0.0 0.27137310634219514 2.621089120374241E-4 82-83 1.0845886015341686E-4 0.0010845886015341687 0.0 0.27173915499521295 2.8018538872966024E-4 84-85 1.0845886015341686E-4 0.0010891077207072276 0.0 0.27208712717153843 2.8018538872966024E-4 86-87 1.0845886015341686E-4 0.0011117033165725229 0.0 0.2721549139591343 2.8018538872966024E-4 88-89 1.0845886015341686E-4 0.0011659327466492313 0.0 0.27217750955499964 2.892236270757783E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13595 0.0 50.43259 1 GTATCAA 24705 0.0 37.794 1 TCAACGC 27380 0.0 33.97144 4 ATCAACG 27470 0.0 33.65058 3 CAACGCA 28175 0.0 32.98138 5 AACGCAG 29235 0.0 31.891407 6 TATCAAC 29225 0.0 31.462791 2 ACGCAGA 34325 0.0 27.123514 7 CGCAGAG 35030 0.0 26.64095 8 GTGGTAT 7110 0.0 24.279627 1 TGGTATC 6790 0.0 23.267097 2 GCAGAGT 42095 0.0 22.159138 9 GAGTACT 25235 0.0 20.872496 12-13 CAGAGTA 41025 0.0 19.650333 10-11 GTACATG 31195 0.0 19.489359 1 TACATGG 30835 0.0 19.141224 2 ACATGGG 30780 0.0 18.786152 3 GTACTTT 28315 0.0 18.430042 14-15 AGAGTAC 37575 0.0 17.742062 10-11 CATGGGG 22800 0.0 16.699694 4 >>END_MODULE