##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140332_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7032443 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.03863095655379 33.0 31.0 34.0 30.0 34.0 2 32.07672511529777 34.0 31.0 34.0 30.0 34.0 3 32.27302489334076 34.0 31.0 34.0 30.0 34.0 4 35.686504817742566 37.0 35.0 37.0 35.0 37.0 5 35.762294838365555 37.0 35.0 37.0 35.0 37.0 6 35.816527058946654 37.0 36.0 37.0 35.0 37.0 7 35.72300621562094 37.0 36.0 37.0 35.0 37.0 8 35.68275818232725 37.0 36.0 37.0 35.0 37.0 9 37.38540390586884 39.0 38.0 39.0 35.0 39.0 10-11 37.38525786842496 39.0 38.0 39.0 35.0 39.0 12-13 37.32238583377071 39.0 38.0 39.0 34.5 39.0 14-15 38.72639756909512 41.0 39.0 41.0 34.0 41.0 16-17 38.74094784699997 41.0 38.5 41.0 34.0 41.0 18-19 38.76097004981057 41.0 38.5 41.0 34.0 41.0 20-21 38.80623658855664 40.5 39.0 41.0 34.0 41.0 22-23 38.77217474039669 40.0 39.0 41.0 34.0 41.0 24-25 38.739175560964426 40.0 38.0 41.0 34.0 41.0 26-27 38.6941487061744 40.0 38.0 41.0 34.0 41.0 28-29 38.620750086705144 40.0 38.0 41.0 34.0 41.0 30-31 38.49917755115057 40.0 38.0 41.0 34.0 41.0 32-33 38.44230934603865 40.0 38.0 41.0 34.0 41.0 34-35 38.29025356926901 40.0 38.0 41.0 33.0 41.0 36-37 38.174152621425975 40.0 38.0 41.0 33.0 41.0 38-39 38.15769549238027 40.0 38.0 41.0 33.0 41.0 40-41 38.070433199166686 40.0 38.0 41.0 33.0 41.0 42-43 37.89222210758902 40.0 37.5 41.0 32.5 41.0 44-45 37.95641313032391 40.0 37.5 41.0 32.5 41.0 46-47 38.157476186362274 40.0 38.0 41.0 33.0 41.0 48-49 38.147632802579565 40.0 38.0 41.0 33.0 41.0 50-51 38.06238946741535 40.0 37.5 41.0 33.0 41.0 52-53 37.98514737928504 40.0 37.0 41.0 33.0 41.0 54-55 37.9074850435575 40.0 37.0 41.0 33.0 41.0 56-57 37.9598023348247 40.0 37.0 41.0 33.0 41.0 58-59 37.77524540117469 40.0 36.5 41.0 32.0 41.0 60-61 37.69790111106582 39.5 36.0 41.0 32.0 41.0 62-63 37.47867284262777 39.0 36.0 41.0 32.0 41.0 64-65 37.274630683919526 39.0 35.0 41.0 32.0 41.0 66-67 37.001550808118914 39.0 35.0 41.0 31.0 41.0 68-69 36.77541488128783 38.0 35.0 40.0 31.0 41.0 70-71 36.48852537436768 37.0 35.0 40.0 31.0 41.0 72-73 36.164847879951694 37.0 35.0 39.5 31.0 41.0 74-75 35.81548937228703 36.0 35.0 39.0 31.0 41.0 76-77 35.4696522613587 36.0 34.0 39.0 30.5 40.5 78-79 35.10457752685576 35.0 34.0 37.5 30.0 39.5 80-81 34.77416683286472 35.0 34.0 37.0 30.0 39.0 82-83 34.445215591551396 35.0 34.0 37.0 30.0 39.0 84-85 34.21083370537832 35.0 34.0 36.0 30.0 37.5 86-87 33.99369893827489 35.0 34.0 36.0 30.0 37.0 88-89 33.784362606717025 35.0 34.0 35.5 29.5 37.0 90-91 33.6039990268939 35.0 34.0 35.0 29.0 36.0 92-93 33.506345354994025 35.0 33.0 35.0 29.0 36.0 94-95 33.47904386763673 35.0 33.0 35.0 29.0 36.0 96-97 33.43196185094338 35.0 33.0 35.0 29.0 36.0 98-99 33.46706526176305 35.0 33.0 35.0 29.0 35.5 100 32.84845566696905 34.0 32.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 1.0 15 6.0 16 33.0 17 208.0 18 1108.0 19 3411.0 20 7584.0 21 13343.0 22 20688.0 23 28405.0 24 37414.0 25 47539.0 26 56489.0 27 62286.0 28 71501.0 29 86797.0 30 103163.0 31 123850.0 32 160091.0 33 213934.0 34 303549.0 35 449395.0 36 727825.0 37 1303876.0 38 1931343.0 39 1206212.0 40 72392.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.770611293969964 20.88110774591419 14.717104710269247 23.631176249846604 2 14.157535699062157 21.21752935281507 41.984335778198236 22.640599169924535 3 17.72191431011032 26.536338590941334 30.592164956194818 25.14958214275353 4 12.204192204320188 18.600176334238704 39.711736181226094 29.483895280215016 5 13.282612121098353 38.37086868004253 35.564549021214 12.781970177645121 6 29.156634284785444 38.40050922855884 19.559237425682397 12.883619060973322 7 26.112021755740226 33.09706027607914 23.532039988857065 17.25887797932357 8 23.91549228074452 37.109068747528205 21.600533346151238 17.37490562557604 9 24.82408391526449 18.127057189330102 21.811646283314985 35.237212612090424 10-11 23.59551768132825 27.48756286116194 29.297581797011564 19.61933766049825 12-13 24.267443916738525 25.008527333579405 29.22864197137589 21.49538677830618 14-15 21.717188451442972 26.57213041599913 26.65560498299081 25.055076149567086 16-17 21.526238180150393 29.5248681935367 27.322487440071086 21.626406186241816 18-19 21.561750819266027 29.150000430172877 28.41490963560944 20.87333911495165 20-21 22.513887332710862 28.21032412965186 28.138181494820152 21.137607042817127 22-23 22.309058998983076 28.10020962139716 27.882920711511005 21.707810668108756 24-25 21.964877262498888 28.305060884275417 27.940144236797764 21.789917616427925 26-27 21.977805189344863 28.401034317118544 27.857272511036246 21.76388798250034 28-29 21.89662015283341 28.475487656889037 27.90857844533914 21.71931374493841 30-31 22.156946849458375 28.305335656644754 27.829568539666 21.708148954230868 32-33 21.926854860246 28.328729032167388 27.841010626656338 21.903405480930278 34-35 22.12371863093147 28.365229277634256 27.836612838304596 21.67443925312968 36-37 22.114407254002014 28.200221722283814 27.88007496668749 21.805296057026684 38-39 21.931229105762583 28.265215390444236 28.03158766507183 21.771967838721356 40-41 22.157132500879793 28.09322940236872 27.980994301196834 21.76864379555466 42-43 21.956854412214533 28.197551570144668 27.920605177197466 21.924988840443334 44-45 22.04954204684814 28.283227126582407 27.85090227799838 21.816328548571082 46-47 21.974337236058698 28.161640549590356 27.82108839466674 22.0429338196842 48-49 21.856926815472416 28.117726091800193 28.009495652741535 22.015851439985852 50-51 21.769357376481242 28.1283794512523 28.02570277549557 22.076560396770883 52-53 21.863564789360648 27.942915971361625 28.01693523310827 22.176584006169453 54-55 21.899476428876824 27.750183396791805 28.150639062198724 22.199701112132647 56-57 21.78426187154462 27.675419956217162 28.23144294092131 22.30887523131691 58-59 21.630873751222886 27.686564115809002 28.37971721402821 22.302844918939897 60-61 21.567492689587812 27.530748073537826 28.66771913924832 22.234040097626046 62-63 21.46106796595191 27.70667046066004 28.655918153381936 22.176343420006116 64-65 21.270630169289287 27.976776120004192 28.39118407026571 22.361409640440815 66-67 21.19198334419886 28.147094892328074 28.147156973662224 22.51376478981084 68-69 21.2767376410313 28.320473644482004 28.1301174393556 22.272671275131096 70-71 21.27354400788862 28.38324431089892 27.81539088423569 22.527820796976766 72-73 21.616663803467446 28.292967553704173 27.465624222329645 22.62474442049874 74-75 21.887670858421256 28.094298049630833 27.465869891806182 22.55216120014173 76-77 22.066257271586004 27.679771991187184 27.539876623558296 22.714094113668516 78-79 22.36507323959457 27.461244528881895 27.4110108416369 22.762671389886634 80-81 22.67160848940626 27.45885122721542 27.21204366205312 22.6574966213252 82-83 22.424744878910662 27.74870514693704 27.08151632320201 22.74503365095029 84-85 22.82466857852811 27.744647155026215 26.992331895595772 22.438352370849902 86-87 22.666823478871848 27.97959848979115 27.052104489891715 22.301473541445286 88-89 22.685947310482796 28.185462323135503 26.938124923431715 22.19046544294999 90-91 22.765553557601255 28.315902674060965 27.294113392413276 21.6244303759245 92-93 22.895417807114075 28.049118644877158 27.582150198280488 21.473313349728283 94-95 22.541990276836543 28.116635272439755 27.99348109013808 21.34789336058562 96-97 22.800495125577307 27.858619587627892 28.252099240059543 21.08878604673525 98-99 23.587257705797136 29.88902478871656 28.677146109088568 17.846571396397735 100 22.792545548345995 31.023405201963893 22.601245957605933 23.58280329208418 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2203.0 1 1738.5 2 1403.5 3 1511.0 4 1496.5 5 1658.0 6 2042.0 7 2411.5 8 2676.5 9 2961.0 10 3232.0 11 3463.0 12 3759.5 13 4268.5 14 5080.0 15 6107.0 16 7290.5 17 8641.5 18 10333.0 19 12425.5 20 14855.5 21 18312.0 22 23449.0 23 29868.0 24 38307.0 25 49712.5 26 63729.0 27 79623.5 28 95791.0 29 113411.5 30 130847.5 31 146943.5 32 163241.5 33 178455.0 34 193946.0 35 209559.5 36 225184.5 37 240307.0 38 251467.5 39 258929.5 40 266854.5 41 273926.5 42 278718.0 43 283303.5 44 288031.5 45 292403.0 46 293097.5 47 291420.5 48 288322.0 49 282116.5 50 274843.0 51 267091.0 52 256908.5 53 242735.0 54 226941.0 55 209827.0 56 189918.5 57 168367.0 58 147684.5 59 128434.0 60 108043.5 61 87713.5 62 70155.5 63 55063.0 64 42107.5 65 32120.5 66 24813.5 67 19473.0 68 15366.0 69 11847.5 70 9145.0 71 7295.0 72 5927.0 73 4750.5 74 3744.5 75 2946.0 76 2229.5 77 1673.0 78 1253.0 79 940.5 80 747.5 81 621.5 82 512.5 83 369.0 84 259.5 85 192.0 86 150.5 87 121.5 88 87.0 89 65.0 90 51.0 91 43.5 92 34.0 93 16.0 94 7.5 95 8.5 96 5.5 97 6.0 98 7.5 99 11.5 100 29.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.021557231249510308 3 0.01215793714929506 4 0.004877394669249364 5 0.009541492195528637 6 0.00895848000474373 7 0.0026164449537664225 8 0.008702523433179623 9 0.005645264383941683 10-11 0.003967326859243651 12-13 0.009150447433416808 14-15 0.00513335124081347 16-17 0.003661600954319857 18-19 0.00549595638386262 20-21 0.004410458620116884 22-23 0.010393133811740198 24-25 0.009090207054399618 26-27 0.022718147157546928 28-29 0.019469208130118563 30-31 0.015478080277449595 32-33 0.012813049434781041 34-35 0.008760115668049441 36-37 0.010564997736432987 38-39 0.005256637921182668 40-41 0.006265318722532182 42-43 0.004110570530306906 44-45 0.0074726710316812455 46-47 0.009974797655431987 48-49 0.007455352096967483 50-51 0.01032900201844035 52-53 9.424794251086622E-4 54-55 0.003481642229465448 56-57 6.808398356059263E-4 58-59 0.0029252186051481575 60-61 7.896519153614631E-4 62-63 0.007056085900759276 64-65 0.0034514227241057203 66-67 0.0038333754306242467 68-69 0.005273897475276353 70-71 8.944114088269857E-4 72-73 5.595797779699357E-4 74-75 0.0 76-77 1.6313374707858045E-5 78-79 3.628158600665404E-4 80-81 1.1676472957872454E-4 82-83 0.0 84-85 0.0010756025679243021 86-87 0.003599974004033875 88-89 0.022143363439937266 90-91 0.0030106474486410713 92-93 0.0015103238776507427 94-95 0.001306414569135275 96-97 5.373573163131217E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 2511.0 20-21 4765.0 22-23 5147.0 24-25 6201.0 26-27 7971.0 28-29 11148.0 30-31 16774.0 32-33 19928.0 34-35 26064.0 36-37 35351.0 38-39 39756.0 40-41 36472.0 42-43 38068.0 44-45 43297.0 46-47 47476.0 48-49 28842.0 50-51 28388.0 52-53 11088.0 54-55 10914.0 56-57 11447.0 58-59 12385.0 60-61 13013.0 62-63 56144.0 64-65 60030.0 66-67 63267.0 68-69 63035.0 70-71 63006.0 72-73 61098.0 74-75 62686.0 76-77 65501.0 78-79 68428.0 80-81 69202.0 82-83 68139.0 84-85 72302.0 86-87 88259.0 88-89 80247.0 90-91 83883.0 92-93 90370.0 94-95 112371.0 96-97 258115.0 98-99 468330.0 100-101 4621024.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.29223994100909 #Duplication Level Percentage of deduplicated Percentage of total 1 89.2283766501928 76.10488110794977 2 7.573265485325527 12.91881553822695 3 1.9250353385016854 4.925717279592221 4 0.6282812365777528 2.1435005592249436 5 0.2918983901394214 1.2448333765082906 6 0.1301783500855391 0.6661921842372288 7 0.07446319255111385 0.4445792740090214 8 0.04405016582211482 0.3005709850192845 9 0.02590780712576373 0.19887614115444227 >10 0.07753799793826607 0.9600222272547779 >50 7.246980592235965E-4 0.04081947978791474 >100 2.5592826172484974E-4 0.039070193607386505 >500 2.47594190622113E-5 0.012121653427746648 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 4.265942859401775E-5 0.0 0.0 0.0 3 0.0 4.265942859401775E-5 0.0 0.0 0.0 4 0.0 9.953866671937476E-5 0.0 0.0 0.0 5 0.0 9.953866671937476E-5 0.0 0.0 0.0 6 0.0 9.953866671937476E-5 0.0 0.0 1.4219809531339252E-5 7 0.0 9.953866671937476E-5 0.0 0.0 2.8439619062678503E-5 8 0.0 1.4219809531339252E-4 0.0 0.0 2.8439619062678503E-5 9 0.0 2.4173676203276728E-4 0.0 1.4219809531339252E-5 8.53188571880355E-5 10-11 2.8439619062678503E-5 2.4173676203276728E-4 0.0 3.5549523828348124E-5 8.53188571880355E-5 12-13 2.8439619062678503E-5 2.4173676203276728E-4 0.0 4.265942859401775E-5 8.53188571880355E-5 14-15 2.8439619062678503E-5 3.1994571445513316E-4 0.0 4.265942859401775E-5 1.0664857148504439E-4 16-17 4.976933335968738E-5 3.3416552398647236E-4 0.0 4.265942859401775E-5 1.2797828578205327E-4 18-19 7.820895242236588E-5 3.6260514304915087E-4 0.0 7.820895242236588E-5 1.4219809531339252E-4 20-21 8.53188571880355E-5 3.910447621118294E-4 0.0 1.4219809531339252E-4 1.4219809531339252E-4 22-23 8.53188571880355E-5 5.545725717222308E-4 0.0 2.772862858611154E-4 1.4930800007906215E-4 24-25 1.2797828578205327E-4 6.25671619378927E-4 0.0 4.337041907058472E-4 1.635278096104014E-4 26-27 1.2797828578205327E-4 6.541112384416055E-4 0.0 9.456173338340603E-4 1.70637714376071E-4 28-29 1.2797828578205327E-4 6.541112384416055E-4 0.0 0.0041806240022137404 1.70637714376071E-4 30-31 1.70637714376071E-4 7.678697146923196E-4 0.0 0.013608357721491665 1.70637714376071E-4 32-33 1.7774761914174063E-4 7.678697146923196E-4 0.0 0.044017420404260654 1.70637714376071E-4 34-35 1.8485752390741026E-4 9.242876195370514E-4 0.0 0.0849918015688147 1.70637714376071E-4 36-37 1.8485752390741026E-4 0.0010949253339131225 0.0 0.1407263450268989 1.70637714376071E-4 38-39 1.8485752390741026E-4 0.0011162550482101312 0.0 0.20433155306057937 1.70637714376071E-4 40-41 1.8485752390741026E-4 0.001237123429226515 0.0 0.26457377614009814 1.70637714376071E-4 42-43 1.8485752390741026E-4 0.0012868927625862023 0.0 0.37541719143688757 1.7774761914174063E-4 44-45 1.8485752390741026E-4 0.0014930800007906214 0.0 0.4878958848297811 1.8485752390741026E-4 46-47 1.8485752390741026E-4 0.0016494979056353532 0.0 0.6132932751818962 1.919674286730799E-4 48-49 1.8485752390741026E-4 0.0016494979056353532 0.0 0.706248170088261 2.1329714297008877E-4 50-51 1.8485752390741026E-4 0.001841465334308433 0.0 1.048789161888692 2.1329714297008877E-4 52-53 1.9907733343874952E-4 0.0018556851438397723 0.0 1.4941749261245345 2.204070477357584E-4 54-55 1.9907733343874952E-4 0.0018699049533711116 0.0 2.0967322451102697 2.2751695250142803E-4 56-57 1.9907733343874952E-4 0.0019054544771994596 0.0 2.7507723845042187 2.2751695250142803E-4 58-59 1.9907733343874952E-4 0.0019125643819651293 0.0 3.430173554197311 2.2751695250142803E-4 60-61 1.9907733343874952E-4 0.0019694436200904863 0.0 4.096961752836106 2.2751695250142803E-4 62-63 1.9907733343874952E-4 0.002076092191575531 0.0 4.583300568522205 2.2751695250142803E-4 64-65 1.9907733343874952E-4 0.00247424685845303 0.0 4.599212535387773 2.2751695250142803E-4 66-67 1.9907733343874952E-4 0.002488466667984369 0.0 4.60596694491516 2.2751695250142803E-4 68-69 1.9907733343874952E-4 0.002552455810875396 0.0 4.612671585109186 2.2751695250142803E-4 70-71 1.9907733343874952E-4 0.0025666756204067347 0.0 4.618786103207662 2.4173676203276728E-4 72-73 1.9907733343874952E-4 0.0025737855251724046 0.0 4.62438870816301 2.4173676203276728E-4 74-75 1.9907733343874952E-4 0.0026519944775947706 0.0 4.629898884356404 2.4173676203276728E-4 76-77 1.9907733343874952E-4 0.002772862858611154 0.0 4.633859101310882 2.4884666679843694E-4 78-79 1.9907733343874952E-4 0.002829742096736511 0.0 4.636048951978708 2.5595657156410654E-4 80-81 1.9907733343874952E-4 0.002829742096736511 0.0 4.637207866455512 2.5595657156410654E-4 82-83 1.9907733343874952E-4 0.002829742096736511 0.0 4.638125044170284 2.701763810954458E-4 84-85 1.9907733343874952E-4 0.0028724015253305288 0.0 4.638537418646692 2.701763810954458E-4 86-87 1.9907733343874952E-4 0.002929280763455886 0.0 4.638708056361068 2.701763810954458E-4 88 1.9907733343874952E-4 0.0030856986683006175 0.0 4.638729386075365 2.701763810954458E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5925 0.0 39.891987 1 GTATCAA 9615 0.0 28.904612 1 TCAACGC 10310 0.0 25.398079 4 ATCAACG 10445 0.0 25.071774 3 CAACGCA 10610 0.0 24.801792 5 AACGCAG 11225 0.0 23.636402 6 TATCAAC 11600 0.0 23.21223 2 GTACATG 20955 0.0 20.245094 1 GTGTAGA 10890 0.0 20.181868 94 TACATGG 21045 0.0 19.829536 2 ACGCAGA 13240 0.0 19.779055 7 TGTAGAT 10595 0.0 19.56376 94 CGCAGAG 13550 0.0 19.35835 8 ACATGGG 21215 0.0 18.66879 3 GGTGTAG 11955 0.0 18.439026 94 AGGTGTA 14415 0.0 16.387873 94 CATGGGG 15620 0.0 16.265268 4 GTGTAGC 3940 0.0 15.491886 1 TATACCG 615 0.0 15.48255 5 GCAGAGT 17405 0.0 14.971551 9 >>END_MODULE