##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140331_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 23532032 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.786433785233676 33.0 31.0 34.0 30.0 34.0 2 31.822786999439742 33.0 31.0 34.0 30.0 34.0 3 32.04919439171254 34.0 31.0 34.0 30.0 34.0 4 35.499848589361086 37.0 35.0 37.0 33.0 37.0 5 35.58889742288299 37.0 35.0 37.0 33.0 37.0 6 35.64321551152064 37.0 35.0 37.0 33.0 37.0 7 35.540056124349995 37.0 35.0 37.0 33.0 37.0 8 35.51084262506527 37.0 35.0 37.0 33.0 37.0 9 37.17094299378821 39.0 37.0 39.0 34.0 39.0 10-11 37.180080347502496 39.0 37.0 39.0 34.0 39.0 12-13 37.112196494548364 39.0 37.0 39.0 33.5 39.0 14-15 38.456248147206324 40.0 38.0 41.0 34.0 41.0 16-17 38.4588149038723 40.0 38.0 41.0 33.5 41.0 18-19 38.46621258631639 40.0 38.0 41.0 33.5 41.0 20-21 38.530323910662666 40.0 38.0 41.0 34.0 41.0 22-23 38.48500209784841 40.0 38.0 41.0 34.0 41.0 24-25 38.46022416557349 40.0 38.0 41.0 33.5 41.0 26-27 38.41869449313283 40.0 38.0 41.0 33.0 41.0 28-29 38.342278256092186 40.0 38.0 41.0 33.0 41.0 30-31 38.22320360881905 40.0 38.0 41.0 33.0 41.0 32-33 38.1751736068389 40.0 38.0 41.0 33.0 41.0 34-35 38.0252093980099 40.0 38.0 41.0 32.5 41.0 36-37 37.89217159380535 40.0 38.0 41.0 32.0 41.0 38-39 37.87218829053603 40.0 37.0 41.0 32.0 41.0 40-41 37.785323247869634 40.0 37.0 41.0 32.0 41.0 42-43 37.58990553491812 40.0 37.0 41.0 31.0 41.0 44-45 37.63426269179903 40.0 37.0 41.0 31.5 41.0 46-47 37.84163938307682 40.0 37.0 41.0 32.0 41.0 48-49 37.82459470516383 40.0 37.0 41.0 32.0 41.0 50-51 37.724918520284824 40.0 37.0 41.0 32.0 41.0 52-53 37.65208236184134 40.0 37.0 41.0 32.0 41.0 54-55 37.576005988254856 40.0 36.0 41.0 32.0 41.0 56-57 37.64421224148887 40.0 36.0 41.0 32.0 41.0 58-59 37.46237706830512 39.5 36.0 41.0 31.0 41.0 60-61 37.39253696912169 39.0 36.0 41.0 31.0 41.0 62-63 37.16934500066155 39.0 35.0 41.0 31.0 41.0 64-65 36.96841640678658 39.0 35.0 41.0 31.0 41.0 66-67 36.70310005771432 38.0 35.0 40.0 31.0 41.0 68-69 36.481233578686755 37.5 35.0 40.0 31.0 41.0 70-71 36.198924399201786 37.0 35.0 40.0 30.5 41.0 72-73 35.87320016856272 36.5 34.0 39.0 30.0 41.0 74-75 35.53889133117192 36.0 34.0 39.0 30.0 41.0 76-77 35.211580164043795 36.0 34.0 39.0 30.0 40.0 78-79 34.84748849474386 35.0 34.0 37.5 30.0 39.5 80-81 34.53236559214724 35.0 34.0 37.0 29.5 39.0 82-83 34.216004293484794 35.0 34.0 36.5 29.0 39.0 84-85 33.99332206279958 35.0 33.5 36.0 29.0 37.5 86-87 33.749346012224805 35.0 33.0 36.0 29.0 37.0 88-89 33.496450275398885 35.0 33.0 35.0 29.0 37.0 90-91 33.31599606620038 35.0 33.0 35.0 29.0 36.0 92-93 33.21851874806877 35.0 33.0 35.0 29.0 36.0 94-95 33.202689573974254 35.0 33.0 35.0 29.0 36.0 96-97 33.18260015780096 35.0 33.0 35.0 29.0 36.0 98-99 33.24787673481532 35.0 33.0 35.0 29.0 35.0 100 32.59169732848401 34.0 32.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 5.0 14 5.0 15 20.0 16 122.0 17 847.0 18 4623.0 19 15264.0 20 33681.0 21 59696.0 22 89049.0 23 119060.0 24 156038.0 25 194577.0 26 223091.0 27 238353.0 28 270396.0 29 324027.0 30 384245.0 31 469876.0 32 606701.0 33 810950.0 34 1139279.0 35 1658799.0 36 2620951.0 37 4441399.0 38 6093036.0 39 3399293.0 40 178649.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.61071734051696 20.972995447226996 14.796669492885272 23.61961771937077 2 14.078818618838188 21.267882134762914 42.077136119445896 22.576163126953002 3 17.63338739122086 26.586301778334214 30.50086322901116 25.279447601433763 4 12.119604305693128 18.787995797184397 39.70332701369757 29.389072883424905 5 13.220977219312612 38.46906277110468 35.55891279885874 12.751047210723963 6 29.02871639604697 38.57814831929289 19.540453175385796 12.85268210927434 7 26.09912215055902 33.1510957500562 23.554021716542643 17.19576038284214 8 23.76497182536529 37.38060257466735 21.585913830114116 17.268511769853248 9 24.748288763063016 18.371218785554266 21.78664661476222 35.093845836620496 10-11 23.455097703633044 27.72877241814946 29.245302823955573 19.570827054261926 12-13 24.18409586977918 25.134263700201288 29.17099536034869 21.510645069670844 14-15 21.624250303998505 26.685698193840796 26.58632058465797 25.10373091750273 16-17 21.504575279473276 29.634025451033907 27.307253601821298 21.554145667671527 18-19 21.494112905336973 29.27206827547496 28.421614538091195 20.81220428109687 20-21 22.453227434830524 28.29686534435989 28.171542477561047 21.07836474324854 22-23 22.214301272660464 28.158703314099192 27.941894717238057 21.685100696002284 24-25 21.94404617704365 28.34510557554743 27.97625762839826 21.734590619010657 26-27 21.92051343346647 28.486451623991176 27.862131840366537 21.730903102175816 28-29 21.797233186197577 28.57413599275774 27.929818820261332 21.698812000783356 30-31 22.10862591658974 28.297072357527213 27.920034654441235 21.674267071441808 32-33 21.86481524970512 28.389814155217298 27.90461586284545 21.840754732232135 34-35 22.090506782661762 28.41268962883663 27.92697119274765 21.569832395753952 36-37 22.04461412053011 28.23076985904882 27.936786731399444 21.787829289021623 38-39 21.815710136585484 28.24741537107789 28.159798226919357 21.777076265417268 40-41 22.00083593633872 28.084810355695218 28.139242762227294 21.775110945738767 42-43 21.83033284065909 28.14016302784561 28.05594254031642 21.97356159117888 44-45 21.895515745758264 28.20477873319624 28.054877211298624 21.844828309746873 46-47 21.820345193573385 28.13935883699178 27.994745037704817 22.04555093173002 48-49 21.709771212371294 28.10903573527671 28.17363563420165 22.007557418150345 50-51 21.62584882474088 28.132242223467074 28.197836796157873 22.044072155634176 52-53 21.65656393942524 28.01502005742222 28.181752428069895 22.146663575082645 54-55 21.72865601742716 27.84833494135833 28.225435963871497 22.197573077343005 56-57 21.628279130912084 27.73901890422309 28.285651473757966 22.347050491106856 58-59 21.55833140338912 27.709225265208953 28.42401081527025 22.308432516131678 60-61 21.514617703355697 27.58048672023606 28.649914601888682 22.254980974519565 62-63 21.460771707132235 27.724066711234173 28.618677765214994 22.1964838164186 64-65 21.309117654148324 27.956085381953876 28.36276395664756 22.37203300725024 66-67 21.18948376626052 28.139173786832828 28.162024236851817 22.509318210054833 68-69 21.244041639186086 28.240219001149825 28.164069768268806 22.35166959139528 70-71 21.24731866285764 28.345991282874216 27.86108135596761 22.54560869830053 72-73 21.508246950080363 28.188631664237047 27.621827508888686 22.681293876793905 74-75 21.722179248432116 28.081814050003484 27.60150860633664 22.594498095227763 76-77 21.847715227412333 27.708888687736373 27.724325261039763 22.71907082381153 78-79 22.12762611655423 27.443269263344945 27.689857057167146 22.739247562933677 80-81 22.351496401328212 27.505528581217188 27.400356283730154 22.74261873372445 82-83 22.16343704590629 27.540049526073567 27.569052839799333 22.727460588220808 84-85 22.2527533500258 27.67469176999829 27.49935334942651 22.573201530549408 86-87 22.01287380742414 27.90932230866411 27.69391019752183 22.383893686389918 88-89 21.878353447977474 27.99624955797913 27.647644134149385 22.477752859894007 90-91 21.73331248158184 28.161617563983494 27.899183377324142 22.205886577110522 92-93 21.649633554156015 27.842375461238895 28.361659221729475 22.14633176287562 94-95 21.33142534738472 27.82939947929683 28.734174650189175 22.105000523129277 96-97 21.679656946065098 27.761553930880144 28.68857686491767 21.870212258137087 98-99 22.998038389461264 29.64285102246328 29.064022174544917 18.295088413530543 100 22.203947992948862 30.87860067675315 22.756999843793967 24.16045148650402 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 10399.0 1 7948.5 2 5813.5 3 5969.0 4 5705.5 5 6029.5 6 7283.0 7 8652.5 8 9658.5 9 10827.5 10 11921.0 11 12625.5 12 13453.5 13 14681.5 14 16535.0 15 19297.5 16 23008.0 17 27601.5 18 33310.5 19 40390.5 20 49603.0 21 62199.5 22 78627.5 23 99933.5 24 127616.5 25 163308.0 26 207858.5 27 257390.5 28 311414.0 29 372362.5 30 430154.5 31 487083.0 32 546432.0 33 601752.0 34 655454.5 35 704769.0 36 755507.5 37 806097.0 38 844550.5 39 870814.5 40 898213.5 41 923329.0 42 939109.0 43 955928.5 44 969685.5 45 980928.0 46 986291.5 47 983299.5 48 974385.0 49 951625.5 50 922580.5 51 887466.0 52 841833.5 53 791132.0 54 735243.5 55 671490.0 56 605990.0 57 539198.0 58 471109.5 59 407863.0 60 342160.0 61 278722.5 62 224811.5 63 177115.5 64 136094.5 65 104717.0 66 81336.0 67 64122.5 68 51289.5 69 40062.0 70 31071.5 71 24456.5 72 19504.5 73 15394.5 74 12151.5 75 9693.0 76 7443.0 77 5696.0 78 4397.5 79 3273.0 80 2422.0 81 1763.0 82 1361.5 83 957.5 84 680.0 85 548.5 86 461.5 87 377.5 88 260.5 89 164.0 90 114.0 91 99.5 92 87.0 93 60.0 94 38.5 95 33.5 96 33.0 97 29.0 98 21.0 99 32.0 100 94.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.02179582281717108 3 0.01246811155109767 4 0.004844460520876395 5 0.00911523492743848 6 0.00860529171471465 7 0.0028131867235264684 8 0.008507552598942583 9 0.004674479449968451 10-11 0.003480362426840147 12-13 0.00863078887535084 14-15 0.004578865097582733 16-17 0.0035972244130893583 18-19 0.005269413198146254 20-21 0.004092641239706742 22-23 0.009672737625183331 24-25 0.009038070529533183 26-27 0.022075071188107406 28-29 0.018698663124564967 30-31 0.015174840051049215 32-33 0.01187027469594045 34-35 0.008465446168859338 36-37 0.009709706705013615 38-39 0.005007803538629977 40-41 0.00604019061954483 42-43 0.0038485965185766167 44-45 0.0066946982661981805 46-47 0.009451969056202806 48-49 0.00688535895098106 50-51 0.009354818091117621 52-53 0.00101666408515918 54-55 0.0028027809945211676 56-57 5.473024906996148E-4 58-59 0.002542224300157793 60-61 9.123766939793952E-4 62-63 0.006691010124771397 64-65 0.003472996913114602 66-67 0.0035305552757911437 68-69 0.004819957169776926 70-71 7.135706514400079E-4 72-73 5.381735891477082E-4 74-75 0.0 76-77 7.260852390670744E-6 78-79 5.311884352297584E-4 80-81 1.337752971873967E-4 82-83 0.0 84-85 8.938502543841959E-4 86-87 0.0034477530390474268 88-89 0.021467406804008334 90-91 0.0027074627940622416 92-93 0.0011657795607142457 94-95 0.001055896689524027 96-97 3.5399075155266715E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 9758.0 20-21 18120.0 22-23 20239.0 24-25 23320.0 26-27 28183.0 28-29 35794.0 30-31 48058.0 32-33 55077.0 34-35 68599.0 36-37 94238.0 38-39 107962.0 40-41 97175.0 42-43 101600.0 44-45 116377.0 46-47 138829.0 48-49 90590.0 50-51 90451.0 52-53 41884.0 54-55 43117.0 56-57 46506.0 58-59 48789.0 60-61 50493.0 62-63 182007.0 64-65 198394.0 66-67 208922.0 68-69 212318.0 70-71 213234.0 72-73 209730.0 74-75 217030.0 76-77 229696.0 78-79 240747.0 80-81 246604.0 82-83 244662.0 84-85 262140.0 86-87 317488.0 88-89 296990.0 90-91 310268.0 92-93 336336.0 94-95 418295.0 96-97 901176.0 98-99 1636138.0 100-101 1.5274698E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 79.82721410139497 #Duplication Level Percentage of deduplicated Percentage of total 1 87.0028376757436 69.45194150570498 2 8.11656544189489 12.958456145962534 3 2.459250684518804 5.88945392766254 4 1.0519156994824568 3.358859990368189 5 0.5110760553931458 2.039888884798253 6 0.3051133451699615 1.4613808998045206 7 0.16935619396381618 0.9463463208462851 8 0.10246109156853657 0.6543346794963362 9 0.07155995025814516 0.5141188323307914 >10 0.20592861183244973 2.434002229147222 >50 0.003174928589336896 0.16943691263085472 >100 7.080523715423579E-4 0.09036310229349986 >500 4.189251720051675E-5 0.02064811343181603 >1k 1.0376695990169592E-5 0.01076845552214061 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.2748580318095777E-5 0.0 2 0.0 2.5497160636191553E-5 0.0 2.1247633863492962E-5 4.249526772698592E-6 3 0.0 2.5497160636191553E-5 0.0 2.9746687408890145E-5 4.249526772698592E-6 4 0.0 6.799242836317747E-5 0.0 5.099432127238311E-5 4.249526772698592E-6 5 0.0 6.799242836317747E-5 0.0 5.52438480450817E-5 4.249526772698592E-6 6 0.0 6.799242836317747E-5 0.0 6.799242836317747E-5 4.249526772698592E-6 7 0.0 7.224195513587607E-5 0.0 7.649148190857466E-5 4.249526772698592E-6 8 0.0 9.348958899936902E-5 0.0 8.074100868127325E-5 8.499053545397184E-6 9 0.0 1.8697917799873805E-4 0.0 1.3173532995365637E-4 1.2748580318095777E-5 10-11 0.0 1.8697917799873805E-4 0.0 1.4873343704445072E-4 1.6998107090794368E-5 12-13 2.124763386349296E-6 1.8697917799873805E-4 0.0 1.9547823154413523E-4 1.6998107090794368E-5 14-15 4.249526772698592E-6 2.188506287939775E-4 0.0 2.4647255281651833E-4 3.6120977567938036E-5 16-17 4.249526772698592E-6 2.2522491895302538E-4 0.0 3.0596592763429864E-4 4.2495267726985925E-5 18-19 4.249526772698592E-6 2.5284684297556623E-4 0.0 3.5271072213398315E-4 5.5243848045081695E-5 20-21 4.249526772698592E-6 2.847182937708057E-4 0.0 4.2495267726985926E-4 6.161813820412958E-5 22-23 4.249526772698592E-6 3.2296403472509305E-4 0.0 6.586766497682818E-4 6.799242836317748E-5 24-25 4.249526772698592E-6 3.5058595874763385E-4 0.0 0.001204740840060051 9.136482561301974E-5 26-27 4.249526772698592E-6 3.6120977567938035E-4 0.0 0.002381859756097561 9.773911577206763E-5 28-29 4.249526772698592E-6 3.6120977567938035E-4 0.0 0.00875614991514545 1.0623816931746482E-4 30-31 4.249526772698592E-6 4.1220409695176346E-4 0.0 0.030507352701203194 1.104876960901634E-4 32-33 4.249526772698592E-6 4.270774406562085E-4 0.0 0.0932941107678249 1.2748580318095777E-4 34-35 4.249526772698592E-6 4.993193957920846E-4 0.0 0.17607064277322076 1.2748580318095777E-4 36-37 4.249526772698592E-6 5.779356410870086E-4 0.0 0.29559070801875503 1.2748580318095777E-4 38-39 4.249526772698592E-6 6.055575651095494E-4 0.0 0.4357783467233089 1.3173532995365637E-4 40-41 4.249526772698592E-6 6.969223907225691E-4 0.0 0.5630814202530406 1.4023438349905354E-4 42-43 4.249526772698592E-6 7.160452611997128E-4 0.0 0.7586552661495616 1.4235914688540284E-4 44-45 4.249526772698592E-6 8.116596135854311E-4 0.0 0.94572155944714 1.4660867365810142E-4 46-47 4.249526772698592E-6 8.881510954940058E-4 0.0 1.155061747323818 1.5510772720349862E-4 48-49 4.249526772698592E-6 8.902758588803551E-4 0.0 1.2963670115695916 1.657315441352451E-4 50-51 4.249526772698592E-6 9.922645014251211E-4 0.0 1.638787504623485 1.657315441352451E-4 52-53 4.249526772698592E-6 9.986387915841691E-4 0.0 2.066901829812232 1.7635536106699157E-4 54-55 4.249526772698592E-6 0.0010071378451295663 0.0 2.6211803553556274 1.9122870477143665E-4 56-57 4.249526772698592E-6 0.0010198864254476621 0.0 3.2245812856280325 2.0185252170318313E-4 58-59 4.249526772698592E-6 0.0010283854789930593 0.0 3.85215139942016 2.0610204847588173E-4 60-61 4.249526772698592E-6 0.0010411340593111551 0.0 4.4686174997552275 2.0822681186223103E-4 62-63 4.249526772698592E-6 0.0010623816931746482 0.0 4.923988289664063 2.209753921803268E-4 64-65 4.249526772698592E-6 0.0011516217554013186 0.0 4.947651779497836 2.2310015556667608E-4 66-67 4.249526772698592E-6 0.0011558712821740172 0.0 4.9548483530874 2.3797349927112116E-4 68-69 4.249526772698592E-6 0.0011877427329692566 0.0 4.960974045930245 2.5284684297556623E-4 70-71 4.249526772698592E-6 0.0012068656034464002 0.0 4.9663603211146405 2.6347065990731274E-4 72-73 4.249526772698592E-6 0.0012217389471508452 0.0 4.97158723904506 3.0171640086160004E-4 74-75 4.249526772698592E-6 0.0012599846881051328 0.0 4.976257468968256 3.1234021779334654E-4 76-77 4.249526772698592E-6 0.0013003551924457694 0.0 4.979678338020278 3.1658974456604514E-4 78-79 4.249526772698592E-6 0.0013237275896956116 0.0 4.981662867023129 3.2083927133874375E-4 80-81 4.249526772698592E-6 0.00132797711646831 0.0 4.9827061258458265 3.335878516568395E-4 82-83 4.249526772698592E-6 0.0013364761700137072 0.0 4.983602775994865 3.44211668588586E-4 84-85 4.249526772698592E-6 0.001355599040490851 0.0 4.983987358167795 3.5271072213398315E-4 86-87 4.249526772698592E-6 0.0013895952546724396 0.0 4.984119093497748 3.5271072213398315E-4 88 4.249526772698592E-6 0.0014660867365810144 0.0 4.98412971731468 3.5271072213398315E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 20405 0.0 36.819523 1 GTATCAA 32455 0.0 30.29035 1 TCAACGC 33435 0.0 27.56689 4 ATCAACG 33925 0.0 27.323906 3 CAACGCA 34290 0.0 26.879013 5 AACGCAG 36085 0.0 25.673906 6 TATCAAC 39155 0.0 24.253895 2 ACGCAGA 42390 0.0 21.733768 7 CGCAGAG 43410 0.0 21.172659 8 GTACATG 69495 0.0 19.398386 1 TACATGG 69130 0.0 18.810339 2 ACATGGG 69530 0.0 18.162771 3 GCAGAGT 55250 0.0 16.565296 9 CATGGGG 51425 0.0 16.058283 4 GTGTAGA 34675 0.0 15.832758 94 AGAGTAC 47480 0.0 15.414426 10-11 GTACTAG 5840 0.0 15.38421 1 CAGAGTA 54255 0.0 14.917317 10-11 TGTAGAT 33955 0.0 14.0638275 94 GTGTAGC 12810 0.0 13.756077 1 >>END_MODULE