##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140327_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7605668 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.059761614627405 33.0 31.0 34.0 30.0 34.0 2 32.09844473884477 34.0 31.0 34.0 30.0 34.0 3 32.29493043872017 34.0 31.0 34.0 30.0 34.0 4 35.70590315012436 37.0 35.0 37.0 35.0 37.0 5 35.78162970037609 37.0 35.0 37.0 35.0 37.0 6 35.83441362415504 37.0 36.0 37.0 35.0 37.0 7 35.74483858617021 37.0 36.0 37.0 35.0 37.0 8 35.70360920303121 37.0 36.0 37.0 35.0 37.0 9 37.41396035167457 39.0 38.0 39.0 35.0 39.0 10-11 37.416768191827465 39.0 38.0 39.0 35.0 39.0 12-13 37.353177656453056 39.0 38.0 39.0 34.5 39.0 14-15 38.764977974321255 41.0 39.0 41.0 35.0 41.0 16-17 38.77492266294033 41.0 39.0 41.0 34.5 41.0 18-19 38.79507342418838 41.0 38.5 41.0 34.0 41.0 20-21 38.84167831118192 41.0 39.0 41.0 34.0 41.0 22-23 38.80542134832555 40.0 39.0 41.0 34.0 41.0 24-25 38.776009358306105 40.0 38.5 41.0 34.0 41.0 26-27 38.732136822545925 40.0 38.0 41.0 34.0 41.0 28-29 38.662888696242995 40.0 38.0 41.0 34.0 41.0 30-31 38.542585704758025 40.0 38.0 41.0 34.0 41.0 32-33 38.4896107972036 40.0 38.0 41.0 34.0 41.0 34-35 38.34092637014781 40.0 38.0 41.0 33.0 41.0 36-37 38.22634949446392 40.0 38.0 41.0 33.0 41.0 38-39 38.21301800347817 40.0 38.0 41.0 33.0 41.0 40-41 38.1290988647182 40.0 38.0 41.0 33.0 41.0 42-43 37.95162668050866 40.0 38.0 41.0 33.0 41.0 44-45 38.013716327834835 40.0 37.5 41.0 32.5 41.0 46-47 38.224741471292 40.0 38.0 41.0 33.0 41.0 48-49 38.221720862080964 40.0 38.0 41.0 33.0 41.0 50-51 38.12748876756247 40.0 38.0 41.0 33.0 41.0 52-53 38.05390708079077 40.0 37.0 41.0 33.0 41.0 54-55 37.976596451556006 40.0 37.0 41.0 33.0 41.0 56-57 38.028166503485814 40.0 37.0 41.0 33.0 41.0 58-59 37.83689418209658 40.0 36.5 41.0 32.5 41.0 60-61 37.754448139434025 40.0 36.0 41.0 32.0 41.0 62-63 37.53928457882253 39.0 36.0 41.0 32.0 41.0 64-65 37.327066141097546 39.0 35.0 41.0 32.0 41.0 66-67 37.054333581012344 39.0 35.0 41.0 31.5 41.0 68-69 36.819234055103564 38.0 35.0 40.5 31.0 41.0 70-71 36.53251966195372 37.0 35.0 40.0 31.0 41.0 72-73 36.20795614124508 37.0 35.0 39.5 31.0 41.0 74-75 35.87543763772356 36.0 35.0 39.0 31.0 41.0 76-77 35.54848800040007 36.0 34.5 39.0 31.0 40.5 78-79 35.20449965722837 35.5 34.0 37.5 30.5 39.5 80-81 34.890186841511024 35.0 34.0 37.0 30.0 39.0 82-83 34.58477097882346 35.0 34.0 37.0 30.0 39.0 84-85 34.36026134696401 35.0 34.0 36.0 30.0 38.0 86-87 34.14117671326836 35.0 34.0 36.0 30.0 37.0 88-89 33.910292657492136 35.0 34.0 36.0 30.0 37.0 90-91 33.7393977720972 35.0 34.0 35.0 30.0 36.5 92-93 33.64023801908769 35.0 34.0 35.0 30.0 36.0 94-95 33.612980006831506 35.0 34.0 35.0 30.0 36.0 96-97 33.567367222109496 35.0 34.0 35.0 30.0 36.0 98-99 33.59786945649074 35.0 34.0 35.0 30.0 36.0 100 33.00762029688091 34.0 32.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 2.0 14 4.0 15 8.0 16 33.0 17 234.0 18 1221.0 19 3787.0 20 8147.0 21 14690.0 22 22377.0 23 30889.0 24 40620.0 25 51252.0 26 60096.0 27 65203.0 28 74284.0 29 90401.0 30 104821.0 31 125738.0 32 161276.0 33 216649.0 34 306113.0 35 455530.0 36 745245.0 37 1363833.0 38 2091278.0 39 1473843.0 40 98094.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.6522609190935 20.91232486088007 14.698235579044471 23.737178640981963 2 14.055041581224067 21.33545448842739 42.09309717619584 22.516406754152698 3 17.604691835312373 26.56708351414257 30.678356805659657 25.1498678448854 4 12.096398817663518 18.702887993604445 39.96603675341342 29.23467643531862 5 13.187073716267125 38.42207135596853 35.694710169796856 12.696144757967486 6 28.95915773462087 38.620638962663314 19.642383301332515 12.777820001383297 7 26.027124023806657 33.16424372833375 23.63883196687632 17.16980028098327 8 23.81247112095026 37.17292873603845 21.729208464858747 17.28539167815254 9 24.856733854017442 18.08315070732051 21.85879203723848 35.201323401423565 10-11 23.48903935424036 27.585126217092572 29.43474731040317 19.491087118263895 12-13 24.17116869354578 25.039649898773842 29.34286460599181 21.44631680168857 14-15 21.617596687570963 26.63792791732602 26.743610865850698 25.000864529252315 16-17 21.447507224801747 29.581393428536757 27.480320230404743 21.490779116256753 18-19 21.47906706857306 29.258492172548884 28.469057606035093 20.793383152842964 20-21 22.477722829587407 28.31028570135594 28.210923785608742 21.001067683447907 22-23 22.171447160354035 28.208924777451266 27.97497024883291 21.64465781336179 24-25 21.903503040401162 28.331265030983033 28.063161928937923 21.70206999967788 26-27 21.897321578705885 28.518900587920403 27.901220826037466 21.682557007336246 28-29 21.814130105902148 28.603337962001085 27.949527913520562 21.6330040185762 30-31 22.09953488532061 28.346359304628354 27.9222386354061 21.631867174644935 32-33 21.86767213999225 28.473753375610904 27.908754873966696 21.749819610430148 34-35 22.05282969959182 28.481980306345005 27.905031012479974 21.5601589815832 36-37 22.030575201925863 28.29809127703386 27.93194244405265 21.739391076987626 38-39 21.833301500140074 28.362877696468114 28.09019463022771 21.713626173164098 40-41 22.07626633893795 28.262779583245923 28.002295598413973 21.65865847940216 42-43 21.957092241360296 28.291947640149523 27.93770524124075 21.813254877249435 44-45 22.033088464705937 28.383428201926446 27.851121794542124 21.732361538825494 46-47 21.99181883462388 28.26282911336978 27.79832288943704 21.947029162569297 48-49 21.908272678710766 28.266231740028484 27.97445265901308 21.851042922247665 50-51 21.855611671852575 28.323141354900876 27.956495679157527 21.864751294089018 52-53 21.906151501531227 28.26267570590363 27.891226111488265 21.93994668107688 54-55 21.975750272917054 28.194989320699083 27.919884075130135 21.90937633125373 56-57 21.989873132133432 28.284023123046175 27.877585500329527 21.848518244490865 58-59 21.945627206627247 28.37458212658382 27.938199784124944 21.74159088266399 60-61 21.962226310326248 28.28421735728055 27.942363116623035 21.811193215770164 62-63 21.99218200328367 28.301287421158506 27.830967183842816 21.875563391715012 64-65 21.94734609702288 28.31070429511065 27.85493232156049 21.887017286305984 66-67 21.982680111182955 28.31007301471392 27.799040275302694 21.90820659880043 68-69 21.955782584257953 28.23499424917562 27.913181674217764 21.896041492348658 70-71 21.900282755697813 28.103728619946377 27.91929791052071 22.076690713835095 72-73 21.973117905320315 28.125681342201165 27.942831214061087 21.95836953841743 74-75 21.861360027308102 28.228278157660814 27.91995934659032 21.99040246844076 76-77 21.9301346367089 28.258080654643052 27.79478331317509 22.01700139547296 78-79 21.907253682753396 28.201204685014996 27.83870251906838 22.052839113163223 80-81 21.900903028486645 28.22655032951485 27.890660977489173 21.981885664509328 82-83 21.907656159983237 28.215177760297 28.01475606196504 21.862410017754723 84-85 22.023382805773196 28.2255253899039 27.906188161883172 21.844903642439736 86-87 21.851206203515996 28.295499480931813 27.956253156438592 21.897041159113595 88-89 21.961827239266373 28.215557344051263 27.903985526056434 21.918629890625926 90-91 21.915433327277146 28.278634461663977 27.950390763406972 21.855541447651905 92-93 21.91528358086636 28.343833057563973 27.93877178307148 21.802111578498184 94-95 21.76214266355467 28.376228324743742 28.014875677973855 21.846753333727733 96-97 21.796273607464254 28.506735642349835 28.07169515718214 21.62529559300377 98-99 22.8769087473593 30.39891047350215 28.3024972912228 18.42168348791575 100 21.85430170852596 31.44014434026044 22.061731897900987 24.64382205331261 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2354.0 1 1917.0 2 1583.0 3 1648.5 4 1636.0 5 1811.5 6 2164.0 7 2537.0 8 2849.0 9 3153.5 10 3459.0 11 3720.0 12 4080.0 13 4620.0 14 5417.0 15 6583.5 16 8056.0 17 9826.0 18 11956.5 19 14654.5 20 18034.5 21 22373.5 22 28237.0 23 36132.0 24 46928.5 25 60672.0 26 77310.0 27 95863.5 28 115296.0 29 135957.0 30 155425.5 31 173441.5 32 191776.5 33 209211.5 34 226426.0 35 242429.0 36 258641.0 37 272750.5 38 281712.5 39 290358.0 40 300583.0 41 307944.5 42 311422.0 43 314682.5 44 318149.0 45 322587.0 46 324969.0 47 324016.5 48 319598.0 49 311079.5 50 302450.0 51 292288.5 52 278186.0 53 261389.5 54 243386.0 55 223625.0 56 203116.0 57 182469.0 58 161317.5 59 140080.0 60 117289.0 61 95456.0 62 76502.0 63 60243.0 64 46250.0 65 35398.5 66 27324.5 67 21405.5 68 16999.0 69 13092.5 70 10234.5 71 8147.0 72 6441.5 73 5046.0 74 4038.0 75 3256.5 76 2523.5 77 1953.0 78 1468.5 79 1062.5 80 813.0 81 613.0 82 474.0 83 333.0 84 232.5 85 184.5 86 157.0 87 132.0 88 91.0 89 55.5 90 37.5 91 32.5 92 26.0 93 16.5 94 14.0 95 14.0 96 13.5 97 10.0 98 5.5 99 10.0 100 27.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.021497125564776162 3 0.012727350181469924 4 0.005101458543812326 5 0.009177366143250008 6 0.008598850225910466 7 0.003063504744093484 8 0.00886181200651935 9 0.005482753125695205 10-11 0.003937852664618019 12-13 0.008776349427821462 14-15 0.004904237208355663 16-17 0.0035368359491894726 18-19 0.005449882903119095 20-21 0.0044068284003383916 22-23 0.010274196654574136 24-25 0.009418951470466284 26-27 0.022810522744662304 28-29 0.01977570417447557 30-31 0.015183600547508997 32-33 0.012306289488618637 34-35 0.008608754144958779 36-37 0.009996968165470138 38-39 0.005203296631268788 40-41 0.005912514404988971 42-43 0.004139033399548791 44-45 0.0065412878685028346 46-47 0.009814057476234948 48-49 0.0077271271983380746 50-51 0.01036793526362372 52-53 0.0010124998415756367 54-55 0.0029341604381793816 56-57 5.47465354267352E-4 58-59 0.0030613964883673475 60-61 0.001328697719873963 62-63 0.007142731711068796 64-65 0.0038517407400039103 66-67 0.00410954816499987 68-69 0.00486241057401024 70-71 8.176968103653099E-4 72-73 5.144752683553668E-4 74-75 0.0 76-77 1.5922783417185366E-5 78-79 4.7505666661110915E-4 80-81 2.9326690946451334E-4 82-83 0.0 84-85 0.0010176778992725772 86-87 0.0037715164591176917 88-89 0.02192852826888425 90-91 0.0026016571424842348 92-93 0.0015719313119003148 94-95 0.001220892377169923 96-97 6.157192386438627E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 2622.0 20-21 4951.0 22-23 5467.0 24-25 6548.0 26-27 8469.0 28-29 11984.0 30-31 19416.0 32-33 23555.0 34-35 30413.0 36-37 42815.0 38-39 46938.0 40-41 46011.0 42-43 50337.0 44-45 56818.0 46-47 58597.0 48-49 58431.0 50-51 56388.0 52-53 57014.0 54-55 61758.0 56-57 64933.0 58-59 64726.0 60-61 63709.0 62-63 62470.0 64-65 65426.0 66-67 68518.0 68-69 68447.0 70-71 68167.0 72-73 66030.0 74-75 67126.0 76-77 69681.0 78-79 72117.0 80-81 72343.0 82-83 71334.0 84-85 73478.0 86-87 90795.0 88-89 80624.0 90-91 83953.0 92-93 88663.0 94-95 110382.0 96-97 261777.0 98-99 471441.0 100-101 4750996.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.39959756840722 #Duplication Level Percentage of deduplicated Percentage of total 1 90.32168806132239 78.03757500197466 2 6.806797568942444 11.762091413724795 3 1.641971919268776 4.255971391303424 4 0.6023375363151532 2.0816688295190042 5 0.25451568897851246 1.0995026551294687 6 0.15115123023221694 0.7835643278419926 7 0.08168907361881168 0.4940532160480924 8 0.04169853030712841 0.2882188990183941 9 0.02664984155357859 0.20722820269419057 >10 0.07060553393719912 0.8758669712113578 >50 5.433970704191951E-4 0.03318732882421011 >100 3.069532265211187E-4 0.04826979220741116 >500 2.2332663686805948E-5 0.012117468214471464 >1k 2.2332563131333152E-5 0.020684502288579452 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.6296178060888273E-5 0.0 0.0 0.0 3 0.0 3.944426709133241E-5 0.0 0.0 0.0 4 0.0 6.574044515222069E-5 0.0 0.0 0.0 5 0.0 6.574044515222069E-5 0.0 0.0 0.0 6 0.0 6.574044515222069E-5 0.0 0.0 0.0 7 0.0 6.574044515222069E-5 0.0 0.0 0.0 8 0.0 7.888853418266483E-5 0.0 0.0 0.0 9 0.0 1.5777706836532965E-4 0.0 0.0 0.0 10-11 0.0 1.5777706836532965E-4 0.0 0.0 0.0 12-13 1.3148089030444136E-5 1.5777706836532965E-4 0.0 0.0 0.0 14-15 1.3148089030444136E-5 2.1036942448710618E-4 0.0 0.0 0.0 16-17 1.3148089030444136E-5 2.1036942448710618E-4 0.0 0.0 0.0 18-19 1.3148089030444136E-5 2.1036942448710618E-4 0.0 6.574044515222068E-6 0.0 20-21 1.9722133545666203E-5 2.2351751351755032E-4 0.0 3.9444267091332406E-5 0.0 22-23 2.6296178060888273E-5 2.563877360936607E-4 0.0 7.888853418266483E-5 0.0 24-25 1.6435111288055172E-4 2.6296178060888274E-4 0.0 1.709251573957738E-4 0.0 26-27 3.155541367306593E-4 2.6296178060888274E-4 0.0 4.075907599437683E-4 0.0 28-29 3.2870222576110344E-4 2.6296178060888274E-4 0.0 0.002136564467447172 0.0 30-31 3.2870222576110344E-4 3.0898009221543726E-4 0.0 0.008243851822088474 0.0 32-33 3.2870222576110344E-4 3.2212818124588134E-4 0.0 0.023410172518705787 0.0 34-35 3.2870222576110344E-4 3.747205373676579E-4 0.0 0.03834640165729033 0.0 36-37 3.418503147915476E-4 4.2073884897421236E-4 0.0 0.05843668169580897 0.0 38-39 3.418503147915476E-4 4.338869380046565E-4 0.0 0.0783757587104775 0.0 40-41 3.9444267091332414E-4 4.4703502703510064E-4 0.0 0.095264479070083 0.0 42-43 3.9444267091332414E-4 4.601831160655448E-4 0.0 0.11189681169359483 0.0 44-45 3.9444267091332414E-4 5.193495167025434E-4 0.0 0.12786516582106924 0.0 46-47 3.9444267091332414E-4 5.653678283090978E-4 0.0 0.14495768156064662 0.0 48-49 4.010167154285462E-4 5.653678283090978E-4 0.0 0.15759956916341866 0.0 50-51 4.075907599437683E-4 6.70552540552651E-4 0.0 0.16826266936710885 0.0 52-53 4.075907599437683E-4 6.70552540552651E-4 0.0 0.17779503391418083 0.0 54-55 4.075907599437683E-4 6.70552540552651E-4 0.0 0.18599286742466276 0.0 56-57 4.075907599437683E-4 6.70552540552651E-4 0.0 0.19403949791129457 0.0 58-59 4.075907599437683E-4 6.771265850678731E-4 0.0 0.20203353604180463 0.0 60-61 4.075907599437683E-4 7.099968076439834E-4 0.0 0.20910720794018356 0.0 62-63 4.075907599437683E-4 7.165708521592055E-4 0.0 0.21627949050629083 0.0 64-65 4.075907599437683E-4 7.6258916376576E-4 0.0 0.22283381288796725 0.0 66-67 4.075907599437683E-4 7.6258916376576E-4 0.0 0.22909230326645863 0.0 68-69 4.2073884897421236E-4 7.757372527962042E-4 0.0 0.23565319969265025 0.0 70-71 4.338869380046565E-4 7.888853418266483E-4 0.0 0.24160928402344145 0.0 72-73 4.4703502703510064E-4 7.954593863418703E-4 0.0 0.24754564622068698 0.0 74-75 4.4703502703510064E-4 8.151815198875366E-4 0.0 0.25271284520965154 0.0 76-77 4.5360907155032274E-4 8.349036534332026E-4 0.0 0.2564534765388129 0.0 78-79 4.601831160655448E-4 8.414776979484247E-4 0.0 0.25847170820498605 0.0 80-81 4.601831160655448E-4 8.414776979484247E-4 0.0 0.2594578148822694 0.0 82-83 4.601831160655448E-4 8.480517424636468E-4 0.0 0.26022697809055034 0.0 84-85 4.601831160655448E-4 8.546257869788689E-4 0.0 0.2604504956040679 0.0 86-87 4.601831160655448E-4 8.809219650397572E-4 0.0 0.26053595818276576 0.0 88 4.601831160655448E-4 9.861066772833102E-4 0.0 0.260542532227281 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6305 0.0 38.597607 1 GTATCAA 10260 0.0 29.813583 1 ATCAACG 10920 0.0 26.385117 3 TCAACGC 11000 0.0 26.191845 4 CAACGCA 11430 0.0 25.317045 5 AACGCAG 11700 0.0 24.624975 6 TATCAAC 12295 0.0 23.98635 2 ACGCAGA 13780 0.0 20.81753 7 CGCAGAG 14190 0.0 20.186132 8 GTACATG 21825 0.0 18.71954 1 TACATGG 21785 0.0 18.444216 2 ACATGGG 22210 0.0 17.633091 3 GCAGAGT 18105 0.0 15.587046 9 CATGGGG 16020 0.0 15.400143 4 AGAGTAC 15555 0.0 14.815012 10-11 GTATAAT 4710 0.0 14.083211 1 CAGAGTA 17880 0.0 14.069917 10-11 GTGTAGC 4220 0.0 13.615996 1 GTATAAG 3430 0.0 13.42627 1 ATGGGGG 9760 0.0 13.158078 5 >>END_MODULE