##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140326_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7758182 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.058851029790226 33.0 31.0 34.0 30.0 34.0 2 32.09641524264319 34.0 31.0 34.0 30.0 34.0 3 32.28891304689681 34.0 31.0 34.0 30.0 34.0 4 35.697626712031244 37.0 35.0 37.0 35.0 37.0 5 35.77328722115568 37.0 35.0 37.0 35.0 37.0 6 35.82735014466018 37.0 36.0 37.0 35.0 37.0 7 35.737368368001675 37.0 36.0 37.0 35.0 37.0 8 35.6946523038516 37.0 36.0 37.0 35.0 37.0 9 37.40432230128141 39.0 38.0 39.0 35.0 39.0 10-11 37.40343195093902 39.0 38.0 39.0 35.0 39.0 12-13 37.34426422324199 39.0 38.0 39.0 34.5 39.0 14-15 38.75675602866754 41.0 39.0 41.0 35.0 41.0 16-17 38.76922898947202 41.0 39.0 41.0 34.5 41.0 18-19 38.78872917650037 41.0 38.5 41.0 34.0 41.0 20-21 38.831638802058045 41.0 39.0 41.0 34.0 41.0 22-23 38.79763564106821 40.0 39.0 41.0 34.0 41.0 24-25 38.76445273859032 40.0 38.5 41.0 34.0 41.0 26-27 38.71864266429594 40.0 38.0 41.0 34.0 41.0 28-29 38.64821529231277 40.0 38.0 41.0 34.0 41.0 30-31 38.52622797522466 40.0 38.0 41.0 34.0 41.0 32-33 38.47091948280759 40.0 38.0 41.0 34.0 41.0 34-35 38.321294830658815 40.0 38.0 41.0 33.0 41.0 36-37 38.20391340463581 40.0 38.0 41.0 33.0 41.0 38-39 38.19105283734199 40.0 38.0 41.0 33.0 41.0 40-41 38.10525560146093 40.0 38.0 41.0 33.0 41.0 42-43 37.92508526486155 40.0 37.5 41.0 33.0 41.0 44-45 37.9867814340231 40.0 37.5 41.0 32.5 41.0 46-47 38.196067726543355 40.0 38.0 41.0 33.0 41.0 48-49 38.19145033250558 40.0 38.0 41.0 33.0 41.0 50-51 38.09685026116459 40.0 37.5 41.0 33.0 41.0 52-53 38.019548120023224 40.0 37.0 41.0 33.0 41.0 54-55 37.93671904385322 40.0 37.0 41.0 33.0 41.0 56-57 37.98193504071817 40.0 37.0 41.0 33.0 41.0 58-59 37.783569405993944 40.0 36.5 41.0 32.5 41.0 60-61 37.69368446288737 39.5 36.0 41.0 32.0 41.0 62-63 37.472587468192415 39.0 35.5 41.0 32.0 41.0 64-65 37.25170155005075 39.0 35.0 41.0 32.0 41.0 66-67 36.96985577568225 38.5 35.0 41.0 31.0 41.0 68-69 36.73041940328803 38.0 35.0 40.0 31.0 41.0 70-71 36.44057901627973 37.0 35.0 40.0 31.0 41.0 72-73 36.116032631212406 37.0 35.0 39.0 31.0 41.0 74-75 35.78659655960499 36.0 35.0 39.0 31.0 41.0 76-77 35.46234055454158 36.0 34.0 39.0 31.0 40.5 78-79 35.12474723266949 35.0 34.0 37.5 30.5 39.5 80-81 34.81681116573989 35.0 34.0 37.0 30.0 39.0 82-83 34.51661025991252 35.0 34.0 37.0 30.0 39.0 84-85 34.30381958611001 35.0 34.0 36.0 30.0 37.5 86-87 34.090681182620195 35.0 34.0 36.0 30.0 37.0 88-89 33.862996433615166 35.0 34.0 35.5 30.0 37.0 90-91 33.700708951789665 35.0 34.0 35.0 30.0 36.0 92-93 33.60584383632521 35.0 34.0 35.0 30.0 36.0 94-95 33.58231032975119 35.0 34.0 35.0 30.0 36.0 96-97 33.53620952773248 35.0 34.0 35.0 30.0 36.0 98-99 33.57032870554536 35.0 34.0 35.0 30.0 36.0 100 32.98367133272661 34.0 32.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 4.0 14 4.0 15 6.0 16 45.0 17 260.0 18 1341.0 19 4069.0 20 8599.0 21 15320.0 22 23125.0 23 31836.0 24 41818.0 25 52892.0 26 62053.0 27 66595.0 28 76320.0 29 92908.0 30 107927.0 31 129503.0 32 167044.0 33 223714.0 34 316487.0 35 473224.0 36 775928.0 37 1412704.0 38 2110486.0 39 1466356.0 40 97614.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.73285468167671 20.797088802505538 14.694653979501899 23.775402536315855 2 14.223064526526139 21.266524850125702 41.72100818668214 22.789402436666023 3 17.658613216259738 26.403165999155366 30.602273612084403 25.335947172500497 4 12.261136315942258 18.615074018674434 39.50174096377156 29.622048701611753 5 13.352016376452147 38.29028241129851 35.46139983602923 12.896301376220112 6 29.25902388278653 38.283899260970394 19.46188641399838 12.9951904422447 7 26.201924998034272 33.058895865263025 23.438262526215112 17.30091661048759 8 23.988885601749534 36.94110413077401 21.616756934091566 17.453253333384897 9 24.99830814412369 17.957171361346514 21.703320536242902 35.34119995828689 10-11 23.647116336190965 27.429275965445466 29.22891652458 19.694691173783568 12-13 24.373957616550364 24.949261755971218 29.054960243440448 21.621820384037978 14-15 21.82148875277503 26.462293929240914 26.541639852264865 25.17457746571919 16-17 21.636759515802755 29.389917066814007 27.233616849673265 21.73970656770997 18-19 21.6601190368004 29.045689553272343 28.346171431503052 20.94801997842421 20-21 22.668356662341083 28.099137901016086 28.007706091387185 21.224799345255644 22-23 22.413724787418428 27.993027074069882 27.753299672030096 21.839948466481594 24-25 22.120524826074398 28.143511170162512 27.849957727503433 21.88600627625966 26-27 22.10896596107593 28.297778372876547 27.72224013481013 21.871015531237394 28-29 22.005570651971617 28.382858259617606 27.74868794748851 21.86288314092227 30-31 22.308626373968483 28.16353908961097 27.694746282813355 21.833088253607187 32-33 22.071692434501582 28.25391769142606 27.663915382014466 22.010474492057895 34-35 22.239629633061757 28.252264772526896 27.740329402711396 21.767776191699948 36-37 22.226732620755925 28.093279499628977 27.74929605331606 21.930691826299046 38-39 22.039175561828507 28.178360912138743 27.897726987899485 21.88473653813326 40-41 22.26549600836501 28.027770493435796 27.825104977510744 21.881628520688455 42-43 22.13121709950433 28.07474217504434 27.7569262267149 22.037114498736436 44-45 22.220609534155006 28.165645713944116 27.676660141563197 21.93708461033769 46-47 22.20049737559569 28.083264389150926 27.571579538145023 22.144658697108362 48-49 22.09789194037358 28.108497574821378 27.74789861090681 22.04571187389824 50-51 22.025761857191675 28.169446501148236 27.750364391466427 22.054427250193662 52-53 22.083122990142545 28.099612040757467 27.657078960195474 22.16018600890452 54-55 22.177419213346468 27.998666296396184 27.68719274690939 22.136721743347955 56-57 22.130892889397312 28.103820395037417 27.686002982082712 22.079283733482555 58-59 22.175821634069795 28.18105856136625 27.68927145116498 21.95384835339897 60-61 22.17473554597862 28.037712344076393 27.732344906901712 22.055207203043274 62-63 22.216585451224248 28.079053343323473 27.636687139156418 22.067674066295865 64-65 22.138687445400418 28.10742436496983 27.627297784135944 22.12659040549381 66-67 22.25153796686925 28.08085124491027 27.534717892849248 22.132892895371235 68-69 22.149594158450604 28.066564135583782 27.63997045745152 22.143871248514095 70-71 22.128283500685598 27.89469898943946 27.71052736414026 22.266490145734686 72-73 22.171210967648573 27.94660376861141 27.678351514354137 22.203833749385872 74-75 22.073911746519048 28.079977192431866 27.67695285918036 22.16915820186873 76-77 22.17353749755976 28.03669802608864 27.593845535043375 22.195918941308218 78-79 22.113043792774377 28.004267153372286 27.619754344559123 22.262934709294218 80-81 22.127121944884927 28.030684046955518 27.65984579932414 22.182348208835414 82-83 22.10970984436293 28.044164703308617 27.75964441357406 22.086481038754396 84-85 22.238234250867098 28.044985720271676 27.671918645042677 22.04486138381855 86-87 22.044051034492334 28.07701658866055 27.73412477739172 22.144807599455394 88-89 22.14786842429059 27.994428531773085 27.72517882967749 22.13252421425884 90-91 22.16255563322923 28.10140419928853 27.71215142144974 22.023888746032505 92-93 22.111088768381983 28.06833481428017 27.755538550202175 22.065037867135672 94-95 21.974769348514908 28.17102816848413 27.78660235522966 22.067600127771303 96-97 22.00661264131906 28.33405100269313 27.835187277079836 21.824149078907972 98-99 23.112866204896733 30.20990879804119 28.044793237379466 18.632431759682618 100 22.1024749935479 31.197290014241634 21.798646469944714 24.901588522265747 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2798.0 1 2181.0 2 1697.0 3 1813.5 4 1770.5 5 1938.0 6 2371.0 7 2845.5 8 3244.0 9 3628.0 10 3977.0 11 4238.5 12 4584.5 13 5083.0 14 5948.5 15 7160.5 16 8738.5 17 10590.0 18 12617.0 19 15130.5 20 18140.0 21 22311.5 22 28257.5 23 35998.5 24 46144.0 25 59455.0 26 76013.0 27 93927.0 28 112337.5 29 132356.5 30 151203.5 31 168370.0 32 187811.0 33 206685.5 34 223507.5 35 239455.0 36 256188.0 37 272068.5 38 282179.0 39 288401.5 40 297528.0 41 306790.5 42 310996.5 43 316743.5 44 322797.0 45 328345.0 46 331623.0 47 329756.0 48 326495.0 49 320578.5 50 312699.0 51 303405.0 52 291034.5 53 275850.5 54 259859.5 55 241055.5 56 220816.0 57 199993.5 58 177795.0 59 155888.5 60 131427.5 61 106887.0 62 86133.5 63 68233.0 64 52779.5 65 40741.0 66 31337.0 67 24226.0 68 18928.5 69 14774.0 70 11604.0 71 8972.5 72 6964.5 73 5435.5 74 4262.0 75 3430.0 76 2663.5 77 2040.0 78 1525.0 79 1095.5 80 823.0 81 621.0 82 490.5 83 346.5 84 235.0 85 181.5 86 160.0 87 131.5 88 89.5 89 64.0 90 47.0 91 31.5 92 22.5 93 14.5 94 9.5 95 9.0 96 8.0 97 5.5 98 5.0 99 9.5 100 27.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.02168033696554167 3 0.013018513873482216 4 0.005284743255571989 5 0.009048511622954966 6 0.009177407799920136 7 0.0032481836595222953 8 0.00872627118054204 9 0.005529645991805812 10-11 0.003860440500106855 12-13 0.009280524741492272 14-15 0.004891609915828218 16-17 0.004002226294768542 18-19 0.005323412108661539 20-21 0.0042041775596993215 22-23 0.010885541722823135 24-25 0.009783296432332072 26-27 0.023017781802029236 28-29 0.020024805128680084 30-31 0.015848974576532778 32-33 0.012634806492378735 34-35 0.008698235628482109 36-37 0.010448872141268228 38-39 0.005368865461112331 40-41 0.006233532835150806 42-43 0.004490102131114724 44-45 0.007445037983156712 46-47 0.010018190209866152 48-49 0.00753586826891592 50-51 0.01011089686898997 52-53 8.141128480088887E-4 54-55 0.003024673051089465 56-57 7.720772114044445E-4 58-59 0.002696277563537745 60-61 9.821578745121437E-4 62-63 0.006824912769083671 64-65 0.0034014865085044157 66-67 0.0037568039997985456 68-69 0.005542116778792387 70-71 7.070315811240814E-4 72-73 6.455349767373017E-4 74-75 0.0 76-77 3.1423568572000706E-5 78-79 4.213080773184584E-4 80-81 1.4482390901132176E-4 82-83 0.0 84-85 7.997705235751326E-4 86-87 0.0036129545496171984 88-89 0.02236171077444785 90-91 0.0029460569224714107 92-93 0.0012245103948250091 94-95 0.0011919486536984432 96-97 5.102320662995547E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 2761.0 20-21 5189.0 22-23 5806.0 24-25 7050.0 26-27 9112.0 28-29 12960.0 30-31 20574.0 32-33 24677.0 34-35 32150.0 36-37 44671.0 38-39 49486.0 40-41 48268.0 42-43 52865.0 44-45 60268.0 46-47 61944.0 48-49 61008.0 50-51 58800.0 52-53 59861.0 54-55 64982.0 56-57 67663.0 58-59 67757.0 60-61 66673.0 62-63 65741.0 64-65 68754.0 66-67 72044.0 68-69 72248.0 70-71 71415.0 72-73 69425.0 74-75 71204.0 76-77 74113.0 78-79 75136.0 80-81 76152.0 82-83 74172.0 84-85 77884.0 86-87 94981.0 88-89 84213.0 90-91 87349.0 92-93 91981.0 94-95 114726.0 96-97 268604.0 98-99 478250.0 100-101 4785265.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.55920696735251 #Duplication Level Percentage of deduplicated Percentage of total 1 89.79684891268847 76.82947181136797 2 7.092272406063511 12.136184053184623 3 1.7695182296927876 4.5419572934036525 4 0.6362302121815292 2.1774140961168826 5 0.30112423113973785 1.2881975207484864 6 0.1529468630788318 0.7851607387901458 7 0.0822156674164074 0.49240151131075954 8 0.04713414117070717 0.32262077917223564 9 0.03085783015064883 0.2376154328780496 >10 0.09002623490934214 1.1086475599988848 >50 5.579787150928278E-4 0.02928814446917083 >100 2.442265802543694E-4 0.03819339867313428 >500 2.306621267490718E-5 0.01284765988597685 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 1.2889617696517045E-5 0.0 0.0 0.0 5 0.0 1.2889617696517045E-5 0.0 0.0 0.0 6 0.0 1.2889617696517045E-5 0.0 0.0 0.0 7 0.0 1.2889617696517045E-5 0.0 1.2889617696517045E-5 0.0 8 0.0 2.577923539303409E-5 0.0 2.577923539303409E-5 0.0 9 0.0 5.155847078606818E-5 0.0 2.577923539303409E-5 0.0 10-11 0.0 5.155847078606818E-5 0.0 3.866885308955113E-5 0.0 12-13 0.0 5.155847078606818E-5 0.0 4.511366193780966E-5 0.0 14-15 0.0 5.80032796343267E-5 0.0 5.155847078606818E-5 2.577923539303409E-5 16-17 0.0 7.089289733084374E-5 0.0 5.155847078606818E-5 2.577923539303409E-5 18-19 0.0 8.378251502736078E-5 0.0 7.089289733084374E-5 2.577923539303409E-5 20-21 0.0 9.022732387561932E-5 0.0 1.2245136811691194E-4 2.577923539303409E-5 22-23 0.0 9.667213272387784E-5 0.0 1.8689945659949714E-4 3.866885308955114E-5 24-25 0.0 1.0311694157213636E-4 0.0 2.8357158932337497E-4 5.155847078606818E-5 26-27 0.0 1.0311694157213636E-4 0.0 5.864776051915255E-4 6.444808848258522E-5 28-29 0.0 1.0311694157213636E-4 0.0 0.0031772907621914516 6.444808848258522E-5 30-31 0.0 1.160065592686534E-4 0.0 0.011420201279114101 6.444808848258522E-5 32-33 0.0 1.2245136811691194E-4 0.0 0.032327161182864744 7.089289733084374E-5 34-35 0.0 1.4823060350994602E-4 0.0 0.054084835854585525 7.733770617910226E-5 36-37 0.0 1.8045464775123864E-4 0.0 0.0807663444863758 7.733770617910226E-5 38-39 6.4448088482585225E-6 2.0623388314427272E-4 0.0 0.10873681488781779 7.733770617910226E-5 40-41 1.2889617696517045E-5 2.577923539303409E-4 0.0 0.1322732568016579 7.733770617910226E-5 42-43 1.2889617696517045E-5 2.706819716268579E-4 0.0 0.15553901674387116 7.733770617910226E-5 44-45 2.577923539303409E-5 3.029060158681506E-4 0.0 0.176574872824587 7.733770617910226E-5 46-47 2.577923539303409E-5 3.2868525126118466E-4 0.0 0.1984549988644247 7.733770617910226E-5 48-49 2.577923539303409E-5 3.480196778059602E-4 0.0 0.21546284941497892 7.733770617910226E-5 50-51 2.577923539303409E-5 3.9957814859202837E-4 0.0 0.22948675346878947 7.733770617910226E-5 52-53 2.577923539303409E-5 3.9957814859202837E-4 0.0 0.24113896786644087 1.0311694157213636E-4 54-55 2.577923539303409E-5 3.9957814859202837E-4 0.0 0.2518953538341844 1.3534098581342895E-4 56-57 2.577923539303409E-5 3.9957814859202837E-4 0.0 0.26277419117004475 1.4178579466168749E-4 58-59 2.577923539303409E-5 4.1246776628854544E-4 0.0 0.27254452138400465 1.675650300547216E-4 60-61 2.577923539303409E-5 4.1246776628854544E-4 0.0 0.2818637149785865 1.675650300547216E-4 62-63 2.577923539303409E-5 4.31802192833321E-4 0.0 0.29054487249719074 1.675650300547216E-4 64-65 2.577923539303409E-5 5.026950901641647E-4 0.0 0.2978790649665089 1.675650300547216E-4 66-67 2.577923539303409E-5 5.026950901641647E-4 0.0 0.30501991317037935 1.675650300547216E-4 68-69 2.577923539303409E-5 5.155847078606818E-4 0.0 0.3119609722999538 1.675650300547216E-4 70-71 2.577923539303409E-5 5.478087521019744E-4 0.0 0.3181931024562198 1.675650300547216E-4 72-73 2.577923539303409E-5 5.54253560950233E-4 0.0 0.32450257031866486 1.675650300547216E-4 74-75 2.577923539303409E-5 5.54253560950233E-4 0.0 0.33014177806089107 1.8045464775123864E-4 76-77 2.577923539303409E-5 5.54253560950233E-4 0.0 0.33415044916450787 1.8689945659949717E-4 78-79 2.577923539303409E-5 5.54253560950233E-4 0.0 0.33656080767375657 1.9334426544775568E-4 80-81 2.577923539303409E-5 5.54253560950233E-4 0.0 0.33759842189832623 2.0623388314427272E-4 82-83 2.577923539303409E-5 5.54253560950233E-4 0.0 0.3384620262839928 2.1912350084078976E-4 84-85 2.577923539303409E-5 5.80032796343267E-4 0.0 0.338790711535254 2.1912350084078976E-4 86-87 2.577923539303409E-5 6.058120317363011E-4 0.0 0.3388809388591296 2.1912350084078976E-4 88 2.577923539303409E-5 6.315912671293352E-4 0.0 0.33889382847682614 2.320131185373068E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6465 0.0 38.365543 1 GTATCAA 10800 0.0 30.764357 1 TCAACGC 11685 0.0 26.953444 4 ATCAACG 11770 0.0 26.616726 3 CAACGCA 12015 0.0 26.142218 5 AACGCAG 12500 0.0 25.195105 6 TATCAAC 13155 0.0 24.297384 2 ACGCAGA 15050 0.0 20.78776 7 CGCAGAG 15230 0.0 20.514559 8 GTACATG 23470 0.0 19.34195 1 TACATGG 22980 0.0 19.278547 2 ACATGGG 23765 0.0 18.267496 3 CATGGGG 17565 0.0 16.612175 4 GCAGAGT 18995 0.0 16.293194 9 AGAGTAC 16640 0.0 14.993016 10-11 TATACCG 535 0.0 14.952961 5 CAGAGTA 18900 0.0 14.570348 10-11 GTGTAGC 4115 0.0 13.405901 1 ACCGTGC 1100 0.0 13.397802 8 GTATAAT 4420 0.0 13.14775 1 >>END_MODULE