##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140325_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 23440650 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.04640046244452 33.0 31.0 34.0 30.0 34.0 2 32.08132995458744 34.0 31.0 34.0 30.0 34.0 3 32.29104077745284 34.0 31.0 34.0 30.0 34.0 4 35.71351037620544 37.0 35.0 37.0 35.0 37.0 5 35.78668663198333 37.0 35.0 37.0 35.0 37.0 6 35.843534671606804 37.0 36.0 37.0 35.0 37.0 7 35.75123236770311 37.0 36.0 37.0 35.0 37.0 8 35.70846119881488 37.0 36.0 37.0 35.0 37.0 9 37.42265615501277 39.0 38.0 39.0 35.0 39.0 10-11 37.42536105014153 39.0 38.0 39.0 35.0 39.0 12-13 37.36681218310926 39.0 38.0 39.0 35.0 39.0 14-15 38.774048159927304 41.0 39.0 41.0 35.0 41.0 16-17 38.78094572889404 41.0 39.0 41.0 35.0 41.0 18-19 38.79133714295465 40.5 38.5 41.0 34.0 41.0 20-21 38.83755299337634 40.5 39.0 41.0 34.0 41.0 22-23 38.79724402572057 40.0 39.0 41.0 34.0 41.0 24-25 38.765095608959044 40.0 38.0 41.0 34.0 41.0 26-27 38.716508965632045 40.0 38.0 41.0 34.0 41.0 28-29 38.64691757402852 40.0 38.0 41.0 34.0 41.0 30-31 38.53226348299809 40.0 38.0 41.0 34.0 41.0 32-33 38.480080757942744 40.0 38.0 41.0 34.0 41.0 34-35 38.333882500396875 40.0 38.0 41.0 33.0 41.0 36-37 38.21131181759034 40.0 38.0 41.0 33.0 41.0 38-39 38.194162173246426 40.0 38.0 41.0 33.0 41.0 40-41 38.108977883945684 40.0 38.0 41.0 33.0 41.0 42-43 37.925584196169254 40.0 37.5 41.0 33.0 41.0 44-45 37.97578180651804 40.0 37.5 41.0 32.5 41.0 46-47 38.18366366368015 40.0 38.0 41.0 33.0 41.0 48-49 38.17189370997955 40.0 38.0 41.0 33.0 41.0 50-51 38.07361197908445 40.0 37.5 41.0 33.0 41.0 52-53 37.99715417453618 40.0 37.0 41.0 33.0 41.0 54-55 37.91382098025588 40.0 37.0 41.0 33.0 41.0 56-57 37.964953818011 40.0 37.0 41.0 33.0 41.0 58-59 37.76509792302119 40.0 36.5 41.0 32.0 41.0 60-61 37.67520487645592 39.5 36.0 41.0 32.0 41.0 62-63 37.444373148858446 39.0 35.5 41.0 32.0 41.0 64-65 37.23269580731208 39.0 35.0 41.0 32.0 41.0 66-67 36.95500323780465 38.5 35.0 41.0 31.0 41.0 68-69 36.7170251722649 38.0 35.0 40.0 31.0 41.0 70-71 36.42622459876575 37.0 35.0 40.0 31.0 41.0 72-73 36.098389713189235 37.0 35.0 39.0 31.0 41.0 74-75 35.763270534235424 36.0 34.5 39.0 31.0 41.0 76-77 35.43714811092459 36.0 34.0 39.0 31.0 40.5 78-79 35.08892846939095 35.0 34.0 37.0 30.0 39.5 80-81 34.78077849441949 35.0 34.0 37.0 30.0 39.0 82-83 34.48094268302837 35.0 34.0 36.5 30.0 39.0 84-85 34.265771976059185 35.0 34.0 36.0 30.0 37.5 86-87 34.046689349585094 35.0 34.0 36.0 30.0 37.0 88-89 33.817660460029245 35.0 34.0 35.5 30.0 37.0 90-91 33.65412512119574 35.0 34.0 35.0 29.5 36.0 92-93 33.56179743955093 35.0 34.0 35.0 29.5 36.0 94-95 33.538333544351 35.0 34.0 35.0 30.0 36.0 96-97 33.49417995650738 35.0 33.5 35.0 30.0 36.0 98-99 33.52839711246525 35.0 33.0 35.0 30.0 35.5 100 32.9259595148563 34.0 32.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 6.0 14 4.0 15 20.0 16 135.0 17 789.0 18 3686.0 19 10553.0 20 23714.0 21 42075.0 22 65339.0 23 91594.0 24 121178.0 25 155424.0 26 184018.0 27 199917.0 28 227431.0 29 274967.0 30 324601.0 31 390833.0 32 507225.0 33 683970.0 34 977444.0 35 1470429.0 36 2429051.0 37 4396619.0 38 6426557.0 39 4176609.0 40 256462.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.59096057489873 20.825177629459933 14.732027482173063 23.85183431346827 2 14.192786545339398 21.210056492339188 41.82958321426574 22.767573748055682 3 17.808834450751768 26.319818527912393 30.41373509481794 25.457611926517902 4 12.335875388783968 18.53547554119381 39.40912644167855 29.719522628343665 5 13.434049029891737 38.252047335074685 35.37948090404009 12.934422730993486 6 29.379746997461442 38.13928365723063 19.43978496917465 13.041184376133286 7 26.342741886628758 32.89126750622484 23.345282165301732 17.420708441844663 8 24.0056607645616 36.97603475985909 21.553638389438245 17.46466608614107 9 24.96569141269296 18.05025685950965 21.66090636787944 35.32314535991795 10-11 23.709792281385102 27.39363933401629 29.14633840679913 19.750229977799478 12-13 24.35861534566899 24.852814458894038 29.077721325380985 21.710848870055983 14-15 21.809532484326162 26.417797963995447 26.465335169831654 25.30733438184674 16-17 21.699804799443477 29.346148635574583 27.162284681631583 21.791761883350365 18-19 21.77026456433668 28.9632035936868 28.237299646017995 21.029232195958528 20-21 22.70116316861985 28.06488190547935 27.94243378042745 21.291521145473343 22-23 22.42622745794054 27.980311646200445 27.696195260589374 21.897265635269633 24-25 22.170728106366404 28.12690078771849 27.76573455777082 21.936636548144286 26-27 22.142453191990892 28.24171395365365 27.66240067208231 21.953432182273144 28-29 22.057178367133528 28.296038276377317 27.72949090283215 21.91729245365701 30-31 22.352411151607026 28.122619499234357 27.637659747920136 21.887309601238485 32-33 22.13589175685631 28.199156008086085 27.642085815465343 22.02286641959226 34-35 22.290942601130563 28.22200506818368 27.64614630040671 21.84090603027905 36-37 22.259374961001576 28.056293444243696 27.65704058470596 22.027291010048767 38-39 22.04404770297805 28.182121570663266 27.815267257131048 21.958563469227638 40-41 22.301291276632604 28.021931153420766 27.7516096685666 21.925167901380032 42-43 22.19246712508258 28.06691926858951 27.646398936498368 22.094214669829547 44-45 22.21817416960269 28.123403026590555 27.621922571602465 22.03650023220429 46-47 22.211211179166156 28.063106296676825 27.570361001364212 22.155321522792804 48-49 22.084986051561653 28.08318202046973 27.727685091290468 22.104146836678147 50-51 22.10216339004705 28.092892010530612 27.699636766911524 22.105307832510817 52-53 22.180838694728063 28.026699830464842 27.608417870083663 22.18404360472343 54-55 22.200287141338986 27.965709738859772 27.691982359109062 22.142020760692173 56-57 22.1926357853573 28.040624232253187 27.65121117595871 22.115528806430802 58-59 22.179881080250333 28.10774876100887 27.66362918196433 22.048740976776465 60-61 22.19356651859802 27.990321036316644 27.730542005797204 22.085570439288134 62-63 22.21929663559984 28.087891554654927 27.62445853787187 22.068353271873367 64-65 22.166518634020253 28.043387739806914 27.652048534365754 22.138045091807076 66-67 22.20484125568058 28.04293989234071 27.57887978565641 22.1733390663223 68-69 22.18451579710779 27.9746745186374 27.655080065913694 22.185729618341117 70-71 22.124428882365592 27.82851518580744 27.723220434002023 22.323835497824945 72-73 22.18720970190386 27.87670754293337 27.674512520300215 22.261570234862553 74-75 22.034722072066447 28.02873418123719 27.669360232856334 22.26718351384003 76-77 22.14790237489112 27.983092521828272 27.618512392946887 22.25049271033372 78-79 22.115849117251376 27.971196388341458 27.589960981603834 22.32299351280333 80-81 22.057050768436802 27.96791646387402 27.692505780573935 22.28252698711524 82-83 22.112503568952427 27.997575778866075 27.738310836739156 22.151609815442345 84-85 22.214560121233692 27.980852978650706 27.650737566688864 22.153849333426738 86-87 22.061720878329425 28.037409211000003 27.715335031193295 22.185534879477277 88-89 22.14534769295097 28.002882534988295 27.682350362116114 22.169419409944624 90-91 22.1197264495516 28.07067645839262 27.705191718920435 22.104405373135346 92-93 22.144644920848553 28.07315845963973 27.716582387982363 22.065614231529356 94-95 21.951177300999163 28.139497694675637 27.791366976614242 22.117958027710966 96-97 22.027037200951746 28.295306487646872 27.82801605060706 21.849640260794317 98-99 23.128867714106516 30.193487379489614 28.018611158548346 18.659033747855528 100 22.113359187608307 31.24854160998676 21.750192573483734 24.887906628921204 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 7610.0 1 6033.5 2 4850.5 3 5195.5 4 5031.0 5 5268.5 6 6292.5 7 7483.5 8 8437.5 9 9552.5 10 10649.0 11 11342.5 12 12175.5 13 13538.0 14 15526.0 15 18317.5 16 21731.5 17 26022.0 18 31555.5 19 38678.0 20 47885.0 21 60366.0 22 77677.0 23 100434.5 24 129962.0 25 168603.5 26 218499.5 27 274222.5 28 329948.5 29 389537.5 30 444003.5 31 495452.5 32 549360.0 33 603767.0 34 661357.5 35 713246.5 36 764448.5 37 810713.0 38 844389.0 39 875223.5 40 907444.0 41 930935.5 42 944862.5 43 960063.5 44 972868.5 45 985854.5 46 992887.5 47 990449.0 48 984392.0 49 969727.5 50 947363.5 51 918296.5 52 879930.5 53 831340.5 54 778554.5 55 722378.5 56 662802.5 57 597929.0 58 531892.0 59 465583.0 60 393548.5 61 323611.5 62 259485.0 63 204171.0 64 158005.0 65 120888.5 66 93177.0 67 73498.0 68 57934.0 69 44388.0 70 34521.5 71 26865.0 72 20875.5 73 16055.5 74 12275.5 75 9610.0 76 7406.5 77 5717.5 78 4427.5 79 3351.0 80 2547.5 81 1937.0 82 1500.0 83 1100.5 84 822.5 85 638.0 86 532.5 87 435.5 88 289.0 89 194.5 90 151.0 91 122.0 92 102.0 93 64.5 94 35.0 95 25.0 96 23.5 97 25.0 98 19.5 99 33.0 100 111.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.021684552262842542 3 0.01278121553796503 4 0.005200367737242782 5 0.009095310923545208 6 0.009172100603012288 7 0.002994797499216105 8 0.009044117803900489 9 0.005046788378308622 10-11 0.0037861578070573984 12-13 0.009050516943856078 14-15 0.00475669403365521 16-17 0.0038885440463468377 18-19 0.005644041440830353 20-21 0.004398335265314369 22-23 0.010122115205174528 24-25 0.009454155849451203 26-27 0.02267472570180479 28-29 0.019079888542614727 30-31 0.015599212471441665 32-33 0.012435907391262097 34-35 0.009062605388382257 36-37 0.010340012675343424 38-39 0.005315657233524578 40-41 0.0061100726520073425 42-43 0.004142831513555823 44-45 0.007226028781705533 46-47 0.009900457454372279 48-49 0.007098838579060942 50-51 0.010043485497931635 52-53 9.614637543960069E-4 54-55 0.0028013229536087768 56-57 6.541154253941901E-4 58-59 0.002807280718957043 60-61 0.001019446801223687 62-63 0.007253099886859297 64-65 0.0037536834376575698 66-67 0.004026580108518771 68-69 0.0051824772393847295 70-71 7.884669913392994E-4 72-73 4.924514355574911E-4 74-75 0.0 76-77 1.5387778559505423E-5 78-79 4.2266249940457745E-4 80-81 1.757329157639481E-4 82-83 0.0 84-85 9.420967224132942E-4 86-87 0.0035552926760726057 88-89 0.021892383114331792 90-91 0.002811255966785892 92-93 0.0013764267869794226 94-95 0.0012114466478607843 96-97 4.605774353784763E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 7759.0 20-21 14688.0 22-23 16523.0 24-25 19718.0 26-27 24967.0 28-29 34641.0 30-31 55610.0 32-33 68421.0 34-35 89290.0 36-37 123615.0 38-39 137270.0 40-41 135564.0 42-43 148562.0 44-45 168089.0 46-47 173295.0 48-49 171294.0 50-51 167694.0 52-53 169916.0 54-55 185902.0 56-57 194872.0 58-59 194821.0 60-61 190262.0 62-63 186577.0 64-65 196209.0 66-67 204610.0 68-69 206605.0 70-71 204212.0 72-73 197897.0 74-75 203017.0 76-77 211907.0 78-79 218172.0 80-81 219976.0 82-83 215201.0 84-85 224399.0 86-87 276140.0 88-89 245406.0 90-91 254035.0 92-93 272611.0 94-95 340835.0 96-97 822055.0 98-99 1475730.0 100-101 1.4772283E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.95294751139419 #Duplication Level Percentage of deduplicated Percentage of total 1 88.49038210870175 72.5204764021765 2 7.466525178640579 12.23807492115269 3 2.091751856264985 5.142756902500372 4 0.8316141564219877 2.7261292524393403 5 0.39856925953872707 1.633196280331627 6 0.23315734309448036 1.1464758900310845 7 0.1381121780609855 0.7923090055521392 8 0.09401898310769151 0.616410623015944 9 0.05380855770373146 0.3968792914641957 >10 0.1985944649461386 2.4654268503937082 >50 0.002549970736080396 0.1395573961072032 >100 8.550584895712923E-4 0.11184018758780385 >500 3.0511369892130034E-5 0.0175076683672526 >1k 3.0372923391198973E-5 0.05295932888015367 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 4.2660933037266455E-6 0.0 0.0 0.0 2 0.0 2.5596559822359876E-5 0.0 4.2660933037266455E-6 0.0 3 0.0 2.5596559822359876E-5 0.0 4.2660933037266455E-6 0.0 4 0.0 8.958795937825956E-5 0.0 8.532186607453291E-6 0.0 5 0.0 9.385405268198621E-5 0.0 1.7064373214906582E-5 0.0 6 0.0 9.385405268198621E-5 0.0 2.1330466518633227E-5 0.0 7 0.0 9.385405268198621E-5 0.0 2.1330466518633227E-5 0.0 8 0.0 1.1518451920061944E-4 0.0 3.4128746429813164E-5 0.0 9 0.0 2.3036903840123888E-4 0.0 3.839483973353981E-5 0.0 10-11 4.2660933037266455E-6 2.3036903840123888E-4 0.0 4.906007299285642E-5 0.0 12-13 4.2660933037266455E-6 2.3463513170496553E-4 0.0 6.185835290403636E-5 0.0 14-15 6.399139955589968E-6 3.348883243425417E-4 0.0 6.825749285962633E-5 0.0 16-17 8.532186607453291E-6 3.4768660425372165E-4 0.0 8.105577277080626E-5 0.0 18-19 8.532186607453291E-6 3.754162107279448E-4 0.0 9.38540526819862E-5 0.0 20-21 8.532186607453291E-6 4.09544957157758E-4 0.0 1.1945061250434607E-4 0.0 22-23 1.2798279911179938E-5 4.4367370358757113E-4 0.0 1.5357935893415924E-4 0.0 24-25 1.2798279911179938E-5 4.927337765804275E-4 0.0 2.4103427166055548E-4 0.0 26-27 1.2798279911179938E-5 5.161972897509241E-4 0.0 4.287423770245279E-4 0.0 28-29 1.2798279911179938E-5 5.183303364027875E-4 0.0 0.0018130896540838244 0.0 30-31 1.2798279911179938E-5 5.95120015869867E-4 0.0 0.007109444490660455 0.0 32-33 1.2798279911179938E-5 5.972530625217304E-4 0.0 0.0189243898953314 0.0 34-35 1.2798279911179938E-5 6.847079752481267E-4 0.0 0.029039297118467276 0.0 36-37 1.2798279911179938E-5 7.742959346263862E-4 0.0 0.04263107038414037 0.0 38-39 1.2798279911179938E-5 8.148238210117894E-4 0.0 0.05693954732483954 0.0 40-41 1.2798279911179938E-5 8.958795937825956E-4 0.0 0.06987860831504246 0.0 42-43 1.2798279911179938E-5 9.321413868642721E-4 0.0 0.0823228024820131 0.0 44-45 1.2798279911179938E-5 0.001036660672805575 0.0 0.09462621556996073 0.0 46-47 1.7064373214906582E-5 0.001109184258968928 0.0 0.10840143084769407 0.0 48-49 1.7064373214906582E-5 0.001109184258968928 0.0 0.11894934654115821 0.0 50-51 1.7064373214906582E-5 0.0012329009647770008 0.0 0.12845420242186117 0.0 52-53 1.7064373214906582E-5 0.001241433151384454 0.0 0.1376284360715253 0.0 54-55 1.7064373214906582E-5 0.001247832291340044 0.0 0.14602624073991122 0.0 56-57 1.7064373214906582E-5 0.001262763617903087 4.2660933037266455E-6 0.15460962046700924 0.0 58-59 1.7064373214906582E-5 0.0012648966645549503 4.2660933037266455E-6 0.16248056261238492 0.0 60-61 1.7064373214906582E-5 0.0012904932243773103 4.2660933037266455E-6 0.16985877098118013 0.0 62-63 1.7064373214906582E-5 0.001307557597592217 4.2660933037266455E-6 0.17709406522430052 0.0 64-65 1.7064373214906582E-5 0.0014846004696968727 4.2660933037266455E-6 0.18352093478636472 0.0 66-67 1.7064373214906582E-5 0.0015016648429117794 4.2660933037266455E-6 0.18981555545601336 0.0 68-69 1.7064373214906582E-5 0.001518729216126686 4.2660933037266455E-6 0.19589260536717198 0.0 70-71 2.1330466518633227E-5 0.0015379266359934558 4.2660933037266455E-6 0.20126148378991196 0.0 72-73 2.1330466518633227E-5 0.0015549910092083623 4.2660933037266455E-6 0.20611416492290102 0.0 74-75 2.1330466518633227E-5 0.0015976519422456288 4.2660933037266455E-6 0.21065968733802176 0.0 76-77 2.1330466518633227E-5 0.0016723085750608453 4.2660933037266455E-6 0.21404483237452887 0.0 78-79 2.1330466518633227E-5 0.0017064373214906584 4.2660933037266455E-6 0.21606482755384343 0.0 80-81 2.1330466518633227E-5 0.001710703414794385 4.2660933037266455E-6 0.2170801577601304 0.0 82-83 2.1330466518633227E-5 0.0017213686480537014 4.2660933037266455E-6 0.217882183301231 0.0 84-85 2.1330466518633227E-5 0.0017533643478316514 4.2660933037266455E-6 0.21813601585280273 2.1330466518633227E-6 86-87 2.1330466518633227E-5 0.0017874930942614645 4.2660933037266455E-6 0.21822560381218098 4.2660933037266455E-6 88 2.1330466518633227E-5 0.001889879333550904 4.2660933037266455E-6 0.21823200295213657 4.2660933037266455E-6 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 18260 0.0 37.396748 1 GTATCAA 31490 0.0 30.668964 1 TCAACGC 32495 0.0 27.928795 4 ATCAACG 33090 0.0 27.453815 3 CAACGCA 33435 0.0 27.054579 5 AACGCAG 34860 0.0 25.973368 6 TATCAAC 37000 0.0 25.070673 2 ACGCAGA 42335 0.0 21.40894 7 CGCAGAG 44410 0.0 20.427256 8 GTACATG 69665 0.0 19.610325 1 TACATGG 69225 0.0 19.177868 2 ACATGGG 71885 0.0 17.947376 3 CATGGGG 52610 0.0 16.444355 4 GCAGAGT 55645 0.0 16.241951 9 AGAGTAC 47790 0.0 14.984322 10-11 ACCGAAC 2970 0.0 14.851041 8 CAGAGTA 54110 0.0 14.331461 10-11 GGACCGA 3605 0.0 13.175603 6 GTGTAGC 13330 0.0 13.077371 1 ATGGGGG 32135 0.0 12.946191 5 >>END_MODULE