##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140324_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6727803 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.821824152698884 33.0 31.0 34.0 30.0 34.0 2 31.92679140575311 33.0 31.0 34.0 30.0 34.0 3 31.983882108319758 34.0 31.0 34.0 30.0 34.0 4 35.49272563420778 37.0 35.0 37.0 33.0 37.0 5 35.551259601388445 37.0 35.0 37.0 33.0 37.0 6 35.60451933565831 37.0 35.0 37.0 33.0 37.0 7 35.50757401784803 37.0 35.0 37.0 33.0 37.0 8 35.47954332194328 37.0 35.0 37.0 33.0 37.0 9 37.092079390552904 39.0 37.0 39.0 33.0 39.0 10-11 37.06578113241425 39.0 37.0 39.0 33.0 39.0 12-13 37.01444646937492 39.0 37.0 39.0 33.0 39.0 14-15 38.37414138018013 40.0 38.0 41.0 33.0 41.0 16-17 38.38324472342606 40.0 38.0 41.0 33.0 41.0 18-19 38.39876160166996 40.0 38.0 41.0 33.0 41.0 20-21 38.4478771927541 40.0 38.0 41.0 33.0 41.0 22-23 38.42641007031903 40.0 38.0 41.0 33.0 41.0 24-25 38.43561593244555 40.0 38.0 41.0 33.0 41.0 26-27 38.40748674786887 40.0 38.0 41.0 33.0 41.0 28-29 38.378230000776036 40.0 38.0 41.0 33.0 41.0 30-31 38.32854913836755 40.0 38.0 41.0 33.0 41.0 32-33 38.28646166613281 40.0 38.0 41.0 33.0 41.0 34-35 38.23171114755381 40.0 38.0 41.0 33.0 41.0 36-37 38.17558781289661 40.0 38.0 41.0 33.0 41.0 38-39 38.09780894945236 40.0 38.0 41.0 33.0 41.0 40-41 38.03347072817565 40.0 38.0 41.0 32.5 41.0 42-43 37.95253351381509 40.0 37.0 41.0 32.0 41.0 44-45 37.84367953652027 40.0 37.0 41.0 32.0 41.0 46-47 37.74479172728337 40.0 37.0 41.0 32.0 41.0 48-49 37.64633972280676 40.0 37.0 41.0 31.5 41.0 50-51 37.516808054284745 40.0 36.5 41.0 31.0 41.0 52-53 37.39781460293334 40.0 36.0 41.0 31.0 41.0 54-55 37.25968250522024 39.0 36.0 41.0 31.0 41.0 56-57 37.084411560408476 39.0 35.5 41.0 31.0 41.0 58-59 37.23478961414683 39.0 35.5 41.0 31.0 41.0 60-61 37.301362213585364 39.0 35.5 41.0 31.0 41.0 62-63 37.145573956567716 39.0 35.0 41.0 31.0 41.0 64-65 36.94698810804534 39.0 35.0 41.0 31.0 41.0 66-67 36.6877841919255 38.0 35.0 40.0 31.0 41.0 68-69 36.42359422288354 37.5 35.0 40.0 31.0 41.0 70-71 36.193157328315294 37.0 35.0 40.0 31.0 41.0 72-73 35.96503580412474 36.5 35.0 39.0 31.0 41.0 74-75 35.67630044621542 36.0 34.0 39.0 30.5 41.0 76-77 35.41331956535568 36.0 34.0 39.0 30.0 40.5 78-79 35.090415634456974 35.0 34.0 37.5 30.0 39.5 80-81 34.77961703302822 35.0 34.0 37.0 30.0 39.0 82-83 34.49100776986947 35.0 34.0 36.5 30.0 39.0 84-85 34.246436479114706 35.0 34.0 36.0 30.0 37.5 86-87 34.0575859082234 35.0 34.0 36.0 30.0 37.0 88-89 33.93796743026083 35.0 34.0 35.5 30.0 37.0 90-91 33.82271162246065 35.0 34.0 35.0 30.0 36.0 92-93 33.72281978069633 35.0 34.0 35.0 30.0 36.0 94-95 33.681610213898416 35.0 34.0 35.0 30.0 36.0 96-97 33.674968051097395 35.0 34.0 35.0 30.0 36.0 98-99 33.702987050934894 35.0 34.0 35.0 30.0 36.0 100 33.35046532421967 35.0 33.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 1.0 16 22.0 17 224.0 18 1016.0 19 3240.0 20 7660.0 21 15404.0 22 24594.0 23 34365.0 24 44719.0 25 55936.0 26 65356.0 27 72591.0 28 82528.0 29 100762.0 30 119110.0 31 139867.0 32 173024.0 33 223389.0 34 299976.0 35 419414.0 36 641849.0 37 1185021.0 38 1828813.0 39 1127099.0 40 61823.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.24536642942726 20.528068375367113 14.092876976332391 24.133688218873235 2 14.010888844396902 20.96703782795067 42.26410910069751 22.757964226954922 3 17.81333371384388 26.24094373750242 30.40268866374357 25.543033884910127 4 12.101617719781627 17.983002772227426 40.02217365758183 29.893205850409117 5 13.110016711290056 38.18969001248107 36.00799192958992 12.692301346638946 6 29.405082164266698 38.2687780840194 19.532349564932268 12.793790186781628 7 26.35780209378901 32.711466135378814 23.600111358789785 17.330620412042386 8 23.961778304415024 37.22362816265996 21.546680476030655 17.26791305689436 9 25.1108868675257 17.571560879532296 21.73990528557391 35.577646967368096 10-11 23.729041805357415 27.104856596467375 29.51885594662622 19.647245651548992 12-13 24.40627114594338 24.596162414222487 29.42897731389805 21.56858912593609 14-15 21.713779754054872 26.261899968362624 26.6403445464317 25.38397573115081 16-17 21.653045694955683 29.31959402178974 27.26621832294497 21.761141960309608 18-19 21.69666938500924 28.998440266409958 28.326625916548792 20.97826443203201 20-21 22.575857980844333 28.073379200972713 28.056091094416708 21.294671723766246 22-23 22.323399819259873 27.959939535023885 27.819774785450157 21.89688586026608 24-25 22.05783017439722 28.14369353473219 27.88394855558603 21.91452773528456 26-27 22.039494279082053 28.271803676723568 27.757915342697565 21.930786701496817 28-29 22.016675769791124 28.30307038848265 27.798136156722297 21.882117685003934 30-31 22.22057158698684 28.124668699564765 27.779705041867402 21.87505467158099 32-33 21.99715651236031 28.236974694669158 27.788817294449846 21.977051498520687 34-35 22.165044828554056 28.187132251078413 27.840513051768156 21.807309868599376 36-37 22.137122739116165 28.0517394987467 27.858326318083332 21.952811444053808 38-39 22.01268524584608 28.148264614808937 27.973510583995047 21.865539555349937 40-41 22.20871459451712 27.999344087614475 27.899626437399185 21.892314880469222 42-43 21.98170442265701 28.03556731384261 27.904417517802965 22.07831074569741 44-45 22.078961172290192 28.073217874127764 27.898164921829483 21.94965603175256 46-47 21.95294758153328 28.014420147760795 27.831804265359615 22.20082800534631 48-49 21.900186242349076 28.07172485075606 27.91111009058594 22.11697881630893 50-51 21.806909604426476 27.993060892673682 27.989947838967893 22.210081663931945 52-53 21.962215776293856 27.870801421535678 27.90784353468479 22.259139267485672 54-55 21.97235960651839 27.616517093175563 28.059671438027156 22.351451862278896 56-57 21.8373719177703 27.482415438525937 28.203479496980364 22.476733146723394 58-59 21.671951827820195 27.52490099235895 28.39892640176408 22.40422077805677 60-61 21.676422085297347 27.344133564960682 28.659902037209772 22.3195423125322 62-63 21.533870476861715 27.57582213394416 28.61372919636707 22.276578192827053 64-65 21.329310076526014 27.877999202695776 28.310868820831647 22.48182189994656 66-67 21.204387384621707 28.10689070980669 28.070980016918725 22.617741888652873 68-69 21.324596884973253 28.21007347457527 28.10971948415314 22.355610156298333 70-71 21.33086301122356 28.28386211481355 27.7730057831803 22.61226909078259 72-73 21.706486024541096 28.155892100953306 27.355430620871278 22.782191253634316 74-75 21.908958200948376 27.976741846466137 27.444341012615997 22.669958939969497 76-77 22.15031788308716 27.535547104899276 27.46459098207974 22.849544029933828 78-79 22.404239875345112 27.356734793813448 27.286827969388387 22.95219736145305 80-81 22.790280958337934 27.335197053658256 27.063013101428375 22.811508886575435 82-83 22.456847151581183 27.649583739914117 26.982004842250795 22.911564266253905 84-85 22.91087611951824 27.66509264531641 26.90032113909986 22.523710096065496 86-87 22.71555308970254 27.906710926228577 26.950622381946275 22.4271136021226 88-89 22.633597374936507 28.159280370018188 26.807283787243218 22.399838467802095 90-91 22.806263698235092 28.25820777780672 27.190619895139896 21.744908628818298 92-93 22.994425054240168 27.996802188472785 27.467220073577963 21.541552683709085 94-95 22.647108362403603 28.017040088484823 27.907468209744113 21.428383339367464 96-97 22.853379057848734 27.770898595421713 28.149558811339848 21.226163535389713 98-99 23.615720220675325 29.813850861492124 28.587046173385726 17.98338274444682 100 22.81193574075054 30.998471817550044 22.44240637381468 23.747186067884737 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1572.0 1 1207.0 2 928.0 3 993.0 4 985.5 5 1092.5 6 1290.0 7 1512.5 8 1742.0 9 2012.0 10 2298.5 11 2503.0 12 2728.5 13 3104.5 14 3655.5 15 4381.5 16 5317.5 17 6464.5 18 7775.0 19 9472.5 20 11940.0 21 15295.0 22 19757.5 23 25697.0 24 33840.5 25 44491.0 26 57677.0 27 73047.0 28 89206.5 29 106498.5 30 122720.0 31 138343.0 32 154595.5 33 168990.0 34 182774.5 35 196423.0 36 211734.0 37 227450.0 38 237690.5 39 244305.5 40 253317.0 41 261994.0 42 267877.0 43 274342.0 44 280332.0 45 285741.0 46 288286.5 47 287441.5 48 284926.5 49 280037.5 50 272402.0 51 264467.0 52 254338.5 53 238325.5 54 221776.0 55 205089.5 56 187633.5 57 168773.0 58 149619.5 59 130671.5 60 108316.5 61 86537.5 62 68446.0 63 52690.5 64 39487.0 65 29527.0 66 22377.0 67 17410.0 68 13648.5 69 10477.0 70 8125.5 71 6247.0 72 4747.5 73 3580.0 74 2690.0 75 2054.0 76 1546.0 77 1167.5 78 909.5 79 708.5 80 539.5 81 400.5 82 312.0 83 221.0 84 172.5 85 145.5 86 118.5 87 97.0 88 65.0 89 40.5 90 29.5 91 24.0 92 16.0 93 7.0 94 5.0 95 5.5 96 7.0 97 6.0 98 3.0 99 4.5 100 17.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 2.378190919086067E-4 6 0.0 7 0.0 8 1.486369324428792E-5 9 0.0 10-11 7.43184662214396E-5 12-13 8.175031284358357E-5 14-15 2.229553986643188E-5 16-17 5.202292635500773E-5 18-19 7.654802020808278E-4 20-21 5.502420842099408E-4 22-23 0.0 24-25 1.1914551517292073E-4 26-27 1.4161405890712555E-4 28-29 0.0 30-31 0.0 32-33 4.49776393665889E-5 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 5.5308030172900805E-5 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 1.5281286460194413E-4 76-77 3.430731220906327E-5 78-79 4.508419299641338E-4 80-81 3.507297941715898E-5 82-83 8.8692401713076E-6 84-85 4.93271242143086E-4 86-87 1.3607329306712922E-4 88-89 8.263918711688128E-5 90-91 2.79081112413593E-5 92-93 6.603107044854907E-4 94-95 4.1174267117196137E-4 96-97 3.225624517561424E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 2375.0 20-21 4590.0 22-23 4993.0 24-25 5732.0 26-27 7662.0 28-29 10519.0 30-31 17268.0 32-33 20457.0 34-35 26167.0 36-37 37646.0 38-39 42638.0 40-41 39193.0 42-43 40950.0 44-45 46530.0 46-47 50210.0 48-49 30419.0 50-51 30063.0 52-53 10667.0 54-55 10809.0 56-57 10484.0 58-59 10315.0 60-61 11585.0 62-63 54413.0 64-65 56413.0 66-67 60687.0 68-69 61773.0 70-71 60921.0 72-73 58300.0 74-75 58990.0 76-77 61889.0 78-79 64235.0 80-81 65634.0 82-83 62814.0 84-85 62659.0 86-87 65302.0 88-89 69540.0 90-91 73879.0 92-93 76456.0 94-95 91351.0 96-97 226720.0 98-99 426401.0 100-101 4498154.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.15520464494362 #Duplication Level Percentage of deduplicated Percentage of total 1 88.78615700773493 74.71817212624028 2 7.773079185009006 13.08290139071569 3 1.987313123270091 5.017282277471296 4 0.6938475982573723 2.335635464950072 5 0.30167867129437875 1.269391515989656 6 0.1644369002993894 0.8302932597525183 7 0.08736351810754597 0.5146466321389939 8 0.05768178410514163 0.38833778765229204 9 0.0362074142801484 0.2742338122569128 >10 0.1099684044510656 1.3651706387488298 >50 0.0016937402814948604 0.09508986494594568 >100 5.448254888069022E-4 0.08905683090889432 >500 2.782742060279986E-5 0.019788398228562633 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 4.459107973286376E-5 0.0 0.0 0.0 3 0.0 4.459107973286376E-5 0.0 0.0 0.0 4 0.0 4.459107973286376E-5 0.0 0.0 0.0 5 0.0 4.459107973286376E-5 0.0 1.486369324428792E-5 0.0 6 1.3377323919859128E-4 4.459107973286376E-5 0.0 2.972738648857584E-5 0.0 7 1.3377323919859128E-4 4.459107973286376E-5 0.0 2.972738648857584E-5 0.0 8 1.3377323919859128E-4 8.918215946572752E-5 0.0 2.972738648857584E-5 0.0 9 1.3377323919859128E-4 1.635006256871671E-4 0.0 2.972738648857584E-5 0.0 10-11 1.3377323919859128E-4 1.635006256871671E-4 0.0 3.71592331107198E-5 0.0 12-13 1.3377323919859128E-4 1.635006256871671E-4 0.0 4.459107973286376E-5 0.0 14-15 1.3377323919859128E-4 2.5268278515289464E-4 0.0 4.459107973286376E-5 0.0 16-17 1.635006256871671E-4 2.5268278515289464E-4 0.0 4.459107973286376E-5 1.486369324428792E-5 18-19 1.635006256871671E-4 2.5268278515289464E-4 0.0 5.945477297715168E-5 1.486369324428792E-5 20-21 1.635006256871671E-4 2.5268278515289464E-4 0.0 8.918215946572753E-5 1.486369324428792E-5 22-23 1.635006256871671E-4 2.601146317750386E-4 0.0 1.6350062568716713E-4 2.229553986643188E-5 24-25 1.635006256871671E-4 2.749783250193265E-4 0.0 3.121375581300463E-4 2.972738648857584E-5 26-27 1.635006256871671E-4 2.824101716414705E-4 0.0 8.323668216801235E-4 3.71592331107198E-5 28-29 1.635006256871671E-4 2.824101716414705E-4 0.0 0.004407085046931368 4.459107973286376E-5 30-31 1.7093247230931107E-4 3.195694047521903E-4 0.0 0.016193993789651688 4.459107973286376E-5 32-33 1.7836431893145503E-4 3.270012513743342E-4 0.0 0.04998660038054027 5.945477297715168E-5 34-35 1.7836431893145503E-4 3.6416048448505405E-4 0.0 0.09341088019372744 8.918215946572752E-5 36-37 1.7836431893145503E-4 4.0131971759577384E-4 0.0 0.15280619839790197 8.918215946572752E-5 38-39 1.7836431893145503E-4 4.087515642179178E-4 0.0 0.22003468294181622 8.918215946572752E-5 40-41 1.7836431893145503E-4 4.756381838172134E-4 0.0 0.28339117539559344 8.918215946572752E-5 42-43 1.7836431893145503E-4 4.905018770615013E-4 0.0 0.39728422487994963 8.918215946572752E-5 44-45 1.7836431893145503E-4 5.202292635500773E-4 0.0 0.5014341234426751 8.918215946572752E-5 46-47 1.7836431893145503E-4 5.350929567943651E-4 0.0 0.6080439632373302 1.1890954595430335E-4 48-49 1.85796165553599E-4 5.350929567943651E-4 0.0 0.6784607099821442 1.1890954595430335E-4 50-51 2.0809170542003088E-4 6.317069628822366E-4 0.0 1.0390539080885692 1.1890954595430335E-4 52-53 2.0809170542003088E-4 6.391388095043806E-4 0.0 1.512484833459006 1.4120508582073522E-4 54-55 2.0809170542003088E-4 6.540025027486684E-4 0.0 2.135035761302761 1.635006256871671E-4 56-57 2.0809170542003088E-4 6.540025027486684E-4 0.0 2.8114824408503045 1.7093247230931107E-4 58-59 2.0809170542003088E-4 6.688661959929564E-4 0.0 3.5151148153416503 1.9322801217574296E-4 60-61 2.3038724528646277E-4 6.911617358593882E-4 0.0 4.206990008476764 1.9322801217574296E-4 62-63 2.378190919086067E-4 6.985935824815323E-4 0.0 4.7110624374703 1.9322801217574296E-4 64-65 2.378190919086067E-4 8.472305149244114E-4 0.0 4.718702375797864 1.9322801217574296E-4 66-67 2.5268278515289464E-4 8.695260547908433E-4 0.0 4.72246289018867 1.9322801217574296E-4 68-69 2.5268278515289464E-4 8.992534412794192E-4 0.0 4.725881539634855 1.9322801217574296E-4 70-71 2.5268278515289464E-4 9.066852879015631E-4 0.0 4.728943460443179 1.9322801217574296E-4 72-73 2.6754647839718256E-4 9.066852879015631E-4 0.0 4.73175269846635 2.378190919086067E-4 74-75 2.6754647839718256E-4 9.36412674390139E-4 0.0 4.734168048618546 2.378190919086067E-4 76-77 2.749783250193265E-4 9.512763676344268E-4 0.0 4.736078033200437 2.378190919086067E-4 78-79 2.824101716414705E-4 9.661400608787148E-4 0.0 4.737594129911354 2.378190919086067E-4 80-81 2.824101716414705E-4 9.661400608787148E-4 0.0 4.7384116330397905 2.378190919086067E-4 82-83 2.824101716414705E-4 9.661400608787148E-4 0.0 4.738820384604008 2.378190919086067E-4 84-85 2.824101716414705E-4 9.810037541230028E-4 0.0 4.738976453383073 2.378190919086067E-4 86-87 2.824101716414705E-4 9.958674473672907E-4 0.0 4.739006180769562 2.378190919086067E-4 88 2.824101716414705E-4 9.958674473672907E-4 0.0 4.739006180769562 2.378190919086067E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 4775 0.0 33.095886 1 GTATCAA 8675 0.0 31.058563 1 TCAACGC 8510 0.0 29.681961 4 CAACGCA 8570 0.0 29.474154 5 ATCAACG 8565 0.0 29.440947 3 AACGCAG 9160 0.0 27.575706 6 TATCAAC 9885 0.0 26.470505 2 CGCAGAG 11170 0.0 22.497593 8 ACGCAGA 11195 0.0 22.447353 7 TACATGG 18745 0.0 21.491287 2 TGTAGAT 9305 0.0 21.440338 94 GTACATG 19365 0.0 21.405235 1 ACATGGG 19030 0.0 20.352602 3 GGTGTAG 10575 0.0 19.781271 94 GTGTAGA 9640 0.0 19.020891 94 CATGGGG 14365 0.0 18.485693 4 AGGTGTA 13005 0.0 16.929089 94 GCAGAGT 14915 0.0 16.646036 9 TTAGGTG 16650 0.0 15.665948 94 TAGGTGT 14070 0.0 15.555901 94 >>END_MODULE