##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140323_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8701529 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.821195677219485 33.0 31.0 34.0 30.0 34.0 2 31.939355370763 33.0 31.0 34.0 30.0 34.0 3 31.98964113088631 34.0 31.0 34.0 30.0 34.0 4 35.50302803105063 37.0 35.0 37.0 33.0 37.0 5 35.55717977840446 37.0 35.0 37.0 33.0 37.0 6 35.60987902241089 37.0 35.0 37.0 33.0 37.0 7 35.505031816822076 37.0 35.0 37.0 33.0 37.0 8 35.479470332168056 37.0 35.0 37.0 33.0 37.0 9 37.09724199045938 39.0 37.0 39.0 33.0 39.0 10-11 37.07139164852522 39.0 37.0 39.0 33.0 39.0 12-13 37.019209325165725 39.0 37.0 39.0 33.0 39.0 14-15 38.381202372594515 40.0 38.0 41.0 33.0 41.0 16-17 38.39582790564739 40.0 38.0 41.0 33.0 41.0 18-19 38.41012797865754 40.0 38.0 41.0 33.0 41.0 20-21 38.46369361889355 40.0 38.0 41.0 33.0 41.0 22-23 38.445167499477556 40.0 38.0 41.0 33.0 41.0 24-25 38.45185228208515 40.0 38.0 41.0 33.0 41.0 26-27 38.425589525470954 40.0 38.0 41.0 33.0 41.0 28-29 38.39830328128363 40.0 38.0 41.0 33.0 41.0 30-31 38.34858951200367 40.0 38.0 41.0 33.0 41.0 32-33 38.30531824656922 40.0 38.0 41.0 33.0 41.0 34-35 38.25096605030935 40.0 38.0 41.0 33.0 41.0 36-37 38.191996197078026 40.0 38.0 41.0 33.0 41.0 38-39 38.11032090581545 40.0 38.0 41.0 33.0 41.0 40-41 38.04150910461047 40.0 38.0 41.0 32.5 41.0 42-43 37.96113025395843 40.0 37.0 41.0 32.0 41.0 44-45 37.84580065136524 40.0 37.0 41.0 32.0 41.0 46-47 37.74331403490143 40.0 37.0 41.0 32.0 41.0 48-49 37.64356538519599 40.0 37.0 41.0 32.0 41.0 50-51 37.51278947425328 40.0 36.0 41.0 31.0 41.0 52-53 37.392000774778836 40.0 36.0 41.0 31.0 41.0 54-55 37.25468620360657 39.0 36.0 41.0 31.0 41.0 56-57 37.07854976496399 39.0 35.5 41.0 31.0 41.0 58-59 37.23434284019656 39.0 35.5 41.0 31.0 41.0 60-61 37.29863333661136 39.0 35.5 41.0 31.0 41.0 62-63 37.14381670900703 39.0 35.0 41.0 31.0 41.0 64-65 36.94111535234326 39.0 35.0 40.5 31.0 41.0 66-67 36.67914910668388 38.0 35.0 40.0 31.0 41.0 68-69 36.40416585414599 37.5 35.0 40.0 31.0 41.0 70-71 36.169899786659485 37.0 35.0 40.0 31.0 41.0 72-73 35.92770188683121 36.5 34.5 39.0 31.0 41.0 74-75 35.65344403321973 36.0 34.0 39.0 30.0 41.0 76-77 35.40066632525681 36.0 34.0 39.0 30.0 40.5 78-79 35.07386091729278 35.0 34.0 37.5 30.0 39.5 80-81 34.77748008087828 35.0 34.0 37.0 30.0 39.0 82-83 34.493046779690175 35.0 34.0 36.5 30.0 39.0 84-85 34.26384365843405 35.0 34.0 36.0 30.0 37.5 86-87 34.03637030077225 35.0 34.0 36.0 30.0 37.0 88-89 33.876254269494034 35.0 34.0 35.5 30.0 37.0 90-91 33.74935549098092 35.0 34.0 35.0 30.0 36.0 92-93 33.652788300535164 35.0 34.0 35.0 30.0 36.0 94-95 33.612229848655076 35.0 34.0 35.0 30.0 36.0 96-97 33.61201214873296 35.0 34.0 35.0 30.0 36.0 98-99 33.65525626921958 35.0 34.0 35.0 30.0 36.0 100 33.309563316057876 35.0 33.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 1.0 16 24.0 17 256.0 18 1117.0 19 3670.0 20 9223.0 21 18733.0 22 31151.0 23 43817.0 24 57827.0 25 72466.0 26 84075.0 27 92639.0 28 105555.0 29 128805.0 30 152951.0 31 178804.0 32 223833.0 33 291809.0 34 394727.0 35 551195.0 36 849770.0 37 1555983.0 38 2358699.0 39 1418001.0 40 76398.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.024537181913665 20.588301205454812 14.309898869497534 24.077262743133996 2 13.95235251184016 20.99774648800228 42.32217119543014 22.727729804727424 3 17.789930942021797 26.333360493311 30.3984736475624 25.478234917104796 4 12.085450729406292 18.17905795636606 40.01463420968889 29.720857104538755 5 13.174427561932072 38.13555786703203 35.890073779157156 12.799940791878742 6 29.231851091917292 38.2800769841714 19.674059581942437 12.814012341968867 7 26.243930950977806 32.72088534335579 23.6759796670194 17.359204038647004 8 23.921818797592927 37.10553627988828 21.717999215999857 17.254645706518936 9 25.180011466950237 17.612410416606092 21.729732786042543 35.47784533040113 10-11 23.747956608298164 27.15328478897177 29.440745763487104 19.658012839242957 12-13 24.414867731948533 24.67528213907106 29.332919075993143 21.576931052987263 14-15 21.721239766663878 26.221623578718877 26.658276949056454 25.39885970556079 16-17 21.60387339401548 29.315345739753855 27.327801270491257 21.752979595739408 18-19 21.64020270173207 29.022473827652963 28.37400756540142 20.963315905213552 20-21 22.58752703591616 28.056523073388796 28.055798704575608 21.300151186119436 22-23 22.324567360625842 27.972081476563528 27.843409867254877 21.85994129555576 24-25 22.060890673957797 28.119786242302975 27.9266946063584 21.89262847738083 26-27 22.006065066017168 28.276117454304007 27.788764186333687 21.929053293345135 28-29 21.930264297002715 28.321478034256614 27.833982322058183 21.91427534668249 30-31 22.19894303759333 28.16721452376178 27.771366325612846 21.86247611303204 32-33 21.991978253677306 28.204820549080296 27.78175029559468 22.021450901647714 34-35 22.137808956680153 28.16989981649024 27.889394110343112 21.8028971164865 36-37 22.079935350214743 27.978803600856217 27.935465627548105 22.00579542138093 38-39 21.966339897996576 28.064741607526116 28.05753794280629 21.911380551671016 40-41 22.12230359425271 27.867422818353816 28.062973216111896 21.947300371281578 42-43 21.8369454868556 27.92636285807044 28.048087806470352 22.188603848603602 44-45 21.917932056428814 27.972816888150575 28.08731322562942 22.021937829791188 46-47 21.746271522968293 27.92353590597167 28.02788933084155 22.30230324021849 48-49 21.684993381478606 27.95924498693526 28.076320927958232 22.279440703627902 50-51 21.56722816580706 27.965607550704707 28.147203303824526 22.31996097966371 52-53 21.68226076258238 27.90962648422611 28.069946145585007 22.338166607606507 54-55 21.751463353555884 27.66596793536299 28.138399233050528 22.444169478030602 56-57 21.686151689848334 27.53099831306561 28.170217169025303 22.61263282806076 58-59 21.578665171325497 27.51259645906367 28.30814344958337 22.60059492002747 60-61 21.64367110818625 27.34800690973304 28.519648306942734 22.48867367513797 62-63 21.556835002947096 27.534099049241505 28.447936484304737 22.461129463506666 64-65 21.495481649009022 27.730748782121985 28.150535674316117 22.623233894552875 66-67 21.264244551707236 27.949077111626703 27.960176903476096 22.826501433189968 68-69 21.35068748599598 28.056131746800812 27.99731800295223 22.595862764250978 70-71 21.370104735486674 28.140795730158562 27.67098745722672 22.818112077128042 72-73 21.608034925418345 27.972751741489017 27.37113480595404 23.048078527138603 74-75 21.809653708696054 27.86007122452489 27.49662733513265 22.833647731646405 76-77 21.941159227467587 27.500848543042444 27.595502277337857 22.96248995215211 78-79 22.17127674849564 27.23533517386956 27.562335361503465 23.031052716131338 80-81 22.537081773925344 27.24266311249654 27.238230220950182 22.982024892627933 82-83 22.27028213318366 27.3063749921838 27.47599155837136 22.947351316261177 84-85 22.41994537130938 27.497640478166208 27.346739588247214 22.735674562277193 86-87 22.1472004139211 27.801967475102842 27.499027437093744 22.551804673882316 88-89 21.924013772583077 27.883442355701437 27.483533777887825 22.70901009382766 90-91 21.778221277637513 28.032912684533446 27.75674334935135 22.432122688477698 92-93 21.771594743380316 27.667120012394246 28.22611877725918 22.33516646696626 94-95 21.418525832680903 27.67184376896558 28.593832532393932 22.31579786595959 96-97 21.770424216434307 27.590308384375888 28.507693626482805 22.131573772706993 98-99 23.142092716177093 29.529523792765733 28.79732547686544 18.531058014191736 100 22.27946111637755 30.768313947454 22.51655468755406 24.43567024861439 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2362.0 1 1778.0 2 1329.5 3 1458.5 4 1446.0 5 1527.0 6 1772.5 7 2082.0 8 2331.0 9 2640.0 10 2972.5 11 3253.0 12 3620.0 13 4128.5 14 4822.5 15 5731.5 16 6836.5 17 8237.0 18 10014.0 19 12346.5 20 15341.0 21 19328.5 22 24762.5 23 32159.5 24 41920.0 25 54014.5 26 69433.5 27 87790.0 28 107221.0 29 129614.5 30 151698.0 31 171987.5 32 193986.0 33 213816.5 34 232598.5 35 251347.0 36 272246.5 37 293580.5 38 307098.0 39 315478.0 40 328200.0 41 341230.5 42 348783.5 43 355713.0 44 362432.0 45 368783.0 46 371349.0 47 369747.5 48 365850.0 49 358679.0 50 349624.5 51 337621.0 52 321220.0 53 301498.0 54 281329.5 55 258357.5 56 234323.0 57 209632.5 58 184725.5 59 160476.0 60 133328.5 61 107376.5 62 84704.0 63 65292.0 64 48638.0 65 36126.5 66 27467.5 67 21313.5 68 16714.0 69 12719.0 70 9871.5 71 7535.5 72 5626.0 73 4217.0 74 3133.0 75 2371.0 76 1829.0 77 1425.0 78 1105.5 79 856.5 80 653.5 81 488.5 82 379.5 83 270.5 84 195.5 85 153.5 86 129.5 87 104.5 88 68.0 89 38.5 90 24.0 91 19.5 92 14.5 93 7.5 94 4.5 95 3.5 96 5.0 97 6.5 98 3.5 99 2.5 100 10.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 2.2984466293222717E-4 6 0.0 7 1.149223314661136E-5 8 0.0 9 0.0 10-11 4.022281601313976E-5 12-13 1.5514514747925337E-4 14-15 5.171504915975112E-5 16-17 1.4939903090594768E-4 18-19 8.504252528492407E-4 20-21 5.116547183792067E-4 22-23 0.0 24-25 1.2089441139677373E-4 26-27 2.131849105415617E-4 28-29 0.0 30-31 0.0 32-33 7.524433136700602E-5 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 3.0093414170663726E-5 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 1.8755855545763705E-4 76-77 1.3074621440679463E-5 78-79 4.23282298936113E-4 80-81 3.3481042765737695E-5 82-83 4.747362653542425E-5 84-85 4.532568876676286E-4 86-87 7.653860690829117E-5 88-89 2.821671623168012E-5 90-91 3.579176209645236E-5 92-93 5.74342868151961E-4 94-95 4.2895397945044196E-4 96-97 3.782924017171751E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 2898.0 20-21 5588.0 22-23 6163.0 24-25 6909.0 26-27 8839.0 28-29 11708.0 30-31 16752.0 32-33 18085.0 34-35 22027.0 36-37 33914.0 38-39 41004.0 40-41 34425.0 42-43 36629.0 44-45 43752.0 46-47 55945.0 48-49 35347.0 50-51 35367.0 52-53 14509.0 54-55 14538.0 56-57 14632.0 58-59 14765.0 60-61 16065.0 62-63 69116.0 64-65 73506.0 66-67 78077.0 68-69 80056.0 70-71 80465.0 72-73 79641.0 74-75 81166.0 76-77 86680.0 78-79 92317.0 80-81 94771.0 82-83 92243.0 84-85 93700.0 86-87 96879.0 88-89 101301.0 90-91 106469.0 92-93 114321.0 94-95 131485.0 96-97 305419.0 98-99 573216.0 100-101 5780840.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.61992763723289 #Duplication Level Percentage of deduplicated Percentage of total 1 87.79309465079493 71.6566603244662 2 8.118081570127403 13.251944606139052 3 2.1641984197355284 5.299251552342828 4 0.8522825586571356 2.7825296305628444 5 0.40170141056607006 1.6393420031088508 6 0.20953801932872737 1.02614867849159 7 0.12675167557689285 0.724182381193881 8 0.08599566256073297 0.5615167804258339 9 0.055288531049548104 0.40613813130897175 >10 0.18900170497145752 2.3458623735685378 >50 0.00323578730808188 0.1738088738776906 >100 8.04667446139822E-4 0.10998634445885092 >500 0.0 0.0 >1k 2.5341877390517682E-5 0.022628320054934155 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.298446629322272E-5 0.0 0.0 0.0 3 0.0 2.298446629322272E-5 0.0 1.149223314661136E-5 0.0 4 0.0 9.193786517289087E-5 0.0 6.895339887966816E-5 0.0 5 2.298446629322272E-5 9.193786517289087E-5 0.0 1.0343009831950224E-4 0.0 6 3.447669943983408E-5 9.193786517289087E-5 0.0 1.0343009831950224E-4 1.149223314661136E-5 7 4.596893258644544E-5 9.193786517289087E-5 0.0 1.149223314661136E-4 1.149223314661136E-5 8 4.596893258644544E-5 9.193786517289087E-5 0.0 1.2641456461272497E-4 1.149223314661136E-5 9 4.596893258644544E-5 2.87305828665284E-4 0.0 1.3790679775933632E-4 2.298446629322272E-5 10-11 8.044563202627952E-5 2.87305828665284E-4 0.0 2.0686019663900449E-4 2.298446629322272E-5 12-13 1.0343009831950224E-4 2.9305194523858967E-4 0.0 2.4708301265214424E-4 2.298446629322272E-5 14-15 1.1492233146611361E-4 4.941660253042885E-4 0.0 2.9305194523858967E-4 3.447669943983408E-5 16-17 1.4939903090594768E-4 5.171504915975111E-4 0.0 3.6200534411825786E-4 5.1715049159751115E-5 18-19 1.8387573034578175E-4 5.573733076106509E-4 0.0 4.0222816013139764E-4 6.895339887966816E-5 20-21 2.0686019663900449E-4 6.090883567704021E-4 0.0 5.114043750242055E-4 6.895339887966816E-5 22-23 2.2409854635892153E-4 7.067723385165987E-4 0.0 8.102024368361008E-4 7.469951545297384E-5 24-25 2.5857524579875563E-4 7.412490379564327E-4 0.0 0.0015227208919260053 8.044563202627952E-5 26-27 2.9879806181189536E-4 7.584873876763498E-4 0.0 0.003436177710836797 8.044563202627952E-5 28-29 3.1029029495850674E-4 7.699796208229611E-4 0.0 0.014089477837745529 8.044563202627952E-5 30-31 3.505131109716465E-4 9.653475843153542E-4 0.0 0.051146183618993854 8.61917485995852E-5 32-33 4.0222816013139764E-4 9.653475843153542E-4 0.0 0.15480612660142834 9.193786517289087E-5 34-35 4.367048595712317E-4 0.0010687776826348565 0.0 0.29470108069512846 1.0343009831950224E-4 36-37 4.539432092911487E-4 0.0012066844803941927 0.0 0.49172392576063356 1.0343009831950224E-4 38-39 4.596893258644544E-4 0.0012813839958471665 0.0 0.7158167260029817 1.0343009831950224E-4 40-41 4.596893258644544E-4 0.001419290793606503 0.0 0.9329050101424703 1.0343009831950224E-4 42-43 4.596893258644544E-4 0.0014997364256327823 0.0 1.2527740814286776 1.0343009831950224E-4 44-45 4.7692767558437147E-4 0.0016491354565387301 0.0 1.5268868264416517 1.0343009831950224E-4 46-47 4.884199087309827E-4 0.0017698039045781495 0.0 1.794948910702935 1.0917621489280792E-4 48-49 4.941660253042885E-4 0.0017812961377247608 0.0 1.9550816873678178 1.3790679775933632E-4 50-51 4.941660253042885E-4 0.0019192029354840971 0.0 2.3521613270495334 1.3790679775933632E-4 52-53 4.999121418775942E-4 0.0019192029354840971 0.0 2.833772087641149 1.4939903090594768E-4 54-55 5.056582584508999E-4 0.0019306951686307084 0.0 3.4388266705770905 1.6663738062586473E-4 56-57 5.286427247441225E-4 0.001953679634923931 0.0 4.087936729280567 1.723834971991704E-4 58-59 5.286427247441225E-4 0.001970917984643848 0.0 4.759755440681747 1.7812961377247606E-4 60-61 5.343888413174283E-4 0.002022633033803599 0.0 5.424529413164054 1.8387573034578175E-4 62-63 5.458810744640395E-4 0.0020743480829633508 0.0 5.913409011220901 1.8387573034578175E-4 64-65 5.57373307610651E-4 0.002298446629322272 0.0 5.922959056965736 1.8387573034578175E-4 66-67 5.631194241839567E-4 0.002355907795055329 0.0 5.926475680308599 1.8387573034578175E-4 68-69 5.975961236237907E-4 0.002401876727641774 0.0 5.929727982289089 1.8387573034578175E-4 70-71 6.033422401970964E-4 0.0024133689607883854 0.0 5.932336719213371 1.8387573034578175E-4 72-73 6.148344733437078E-4 0.0024133689607883854 0.0 5.9350373940028245 1.9536796349239313E-4 74-75 6.205805899170135E-4 0.002459337893374831 0.0 5.937536954712212 1.9536796349239313E-4 76-77 6.205805899170135E-4 0.002585752457987556 0.0 5.939795178525522 2.0111408006569882E-4 78-79 6.320728230636248E-4 0.0026661980900138356 0.0 5.9415879668963925 2.0686019663900449E-4 80-81 6.378189396369304E-4 0.0026719442065871414 0.0 5.942363692633789 2.2984466293222722E-4 82-83 6.493111727835419E-4 0.002689182556307058 0.0 5.942846366425947 2.5282912922544994E-4 84-85 6.550572893568475E-4 0.002706420906026975 0.0 5.943024496039719 2.5282912922544994E-4 86-87 6.550572893568475E-4 0.0027351514888935037 0.0 5.943087703322025 2.5282912922544994E-4 88 6.550572893568475E-4 0.002942011685532508 0.0 5.943104941671745 2.5282912922544994E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6900 0.0 37.751366 1 GTATCAA 11625 0.0 30.749197 1 TCAACGC 11710 0.0 29.077682 4 ATCAACG 11760 0.0 28.843119 3 CAACGCA 11780 0.0 28.79415 5 AACGCAG 12335 0.0 27.639606 6 TATCAAC 13280 0.0 26.39319 2 GTACATG 25545 0.0 22.879593 1 ACGCAGA 15050 0.0 22.538137 7 CGCAGAG 15135 0.0 22.382828 8 TACATGG 25590 0.0 21.887718 2 ACATGGG 25890 0.0 21.012619 3 CATGGGG 19440 0.0 18.790483 4 GCAGAGT 19655 0.0 17.080643 9 ATGGGGG 12325 0.0 15.454042 5 GTGTAGA 12675 0.0 15.370264 94 AGAGTAC 17025 0.0 15.121487 10-11 GTATAAG 3825 0.0 15.120813 1 CAGAGTA 19380 0.0 15.09032 10-11 GTACTAG 2470 0.0 14.965005 1 >>END_MODULE