##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140321_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8967489 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.735882140474327 33.0 31.0 34.0 30.0 34.0 2 31.841158879592715 33.0 31.0 34.0 30.0 34.0 3 31.89414807199652 34.0 31.0 34.0 30.0 34.0 4 35.399351479550184 37.0 35.0 37.0 33.0 37.0 5 35.46334620538704 37.0 35.0 37.0 33.0 37.0 6 35.50857748473402 37.0 35.0 37.0 33.0 37.0 7 35.39153524470451 37.0 35.0 37.0 32.0 37.0 8 35.3664431592835 37.0 35.0 37.0 32.0 37.0 9 36.944856692882475 39.0 37.0 39.0 33.0 39.0 10-11 36.92204094144972 39.0 37.0 39.0 33.0 39.0 12-13 36.86545854698009 39.0 37.0 39.0 33.0 39.0 14-15 38.20385455727907 40.0 38.0 41.0 33.0 41.0 16-17 38.222781761984876 40.0 38.0 41.0 33.0 41.0 18-19 38.24796272401338 40.0 38.0 41.0 33.0 41.0 20-21 38.30830394231312 40.0 38.0 41.0 33.0 41.0 22-23 38.293718134061564 40.0 38.0 41.0 33.0 41.0 24-25 38.30762176825931 40.0 38.0 41.0 33.0 41.0 26-27 38.285458673907385 40.0 38.0 41.0 33.0 41.0 28-29 38.258760062618485 40.0 38.0 41.0 33.0 41.0 30-31 38.20841208697204 40.0 38.0 41.0 33.0 41.0 32-33 38.16450590275021 40.0 38.0 41.0 33.0 41.0 34-35 38.10890157313321 40.0 38.0 41.0 32.5 41.0 36-37 38.05175155817243 40.0 38.0 41.0 32.0 41.0 38-39 37.974601429341185 40.0 37.5 41.0 32.0 41.0 40-41 37.910299586897466 40.0 37.0 41.0 32.0 41.0 42-43 37.830376825852724 40.0 37.0 41.0 32.0 41.0 44-45 37.725546353788424 40.0 37.0 41.0 32.0 41.0 46-47 37.63356394412472 40.0 37.0 41.0 31.0 41.0 48-49 37.53777946299398 40.0 36.5 41.0 31.0 41.0 50-51 37.4071134577797 40.0 36.0 41.0 31.0 41.0 52-53 37.28996983241721 39.5 36.0 41.0 31.0 41.0 54-55 37.15506782593627 39.0 36.0 41.0 31.0 41.0 56-57 36.984561354129326 39.0 35.0 41.0 30.0 41.0 58-59 37.142654524338326 39.0 35.0 41.0 31.0 41.0 60-61 37.21158220104937 39.0 35.0 41.0 31.0 41.0 62-63 37.059749284705234 39.0 35.0 41.0 31.0 41.0 64-65 36.860925998366355 38.5 35.0 40.5 31.0 41.0 66-67 36.59672340703099 38.0 35.0 40.0 31.0 41.0 68-69 36.32218795396699 37.5 35.0 40.0 30.5 41.0 70-71 36.0822043686524 37.0 35.0 40.0 30.0 41.0 72-73 35.83503759723166 36.5 34.0 39.0 30.0 41.0 74-75 35.55461131428328 36.0 34.0 39.0 30.0 41.0 76-77 35.28420312324616 36.0 34.0 39.0 30.0 40.5 78-79 34.95377200495659 35.0 34.0 37.5 30.0 39.5 80-81 34.63218707269439 35.0 34.0 37.0 30.0 39.0 82-83 34.34230022402616 35.0 34.0 36.5 30.0 39.0 84-85 34.09894806423988 35.0 34.0 36.0 29.0 37.5 86-87 33.88649496109173 35.0 34.0 36.0 29.0 37.0 88-89 33.72745265838965 35.0 34.0 35.5 29.0 37.0 90-91 33.58922417605851 35.0 33.0 35.0 29.0 36.0 92-93 33.47904604939526 35.0 33.0 35.0 29.0 36.0 94-95 33.44901976224649 35.0 33.0 35.0 29.0 36.0 96-97 33.46242445390648 35.0 33.0 35.0 29.0 36.0 98-99 33.56705496473188 35.0 33.5 35.0 30.0 36.0 100 33.21196230856463 35.0 33.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 63.0 17 400.0 18 1332.0 19 4153.0 20 10774.0 21 21942.0 22 35581.0 23 50923.0 24 67482.0 25 83709.0 26 96214.0 27 104640.0 28 118779.0 29 143951.0 30 169592.0 31 196178.0 32 244886.0 33 316529.0 34 426761.0 35 592005.0 36 907189.0 37 1629638.0 38 2348103.0 39 1321615.0 40 75050.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.87325894684677 20.805054792930328 14.491960904551988 23.829725355670913 2 13.84463365385784 20.95107114154252 42.58680439976006 22.617490804839573 3 17.664119799868168 26.58382965398675 30.400539102975205 25.351511443169876 4 11.97530323148431 18.195729038530185 40.125056189084816 29.70391154090069 5 12.954370174501879 38.47095969564653 35.90439352557489 12.670276604276703 6 29.09953945859315 38.39246415579657 19.689770458597717 12.818225927012566 7 26.1741162994457 32.88893914450299 23.679125784263576 17.257818771787733 8 23.919053353520333 37.20414649053854 21.65820814683088 17.218592009110246 9 25.15387529329559 17.71382156142037 21.80919318663229 35.32310995865175 10-11 23.73203404634467 27.335698731500173 29.3592990005835 19.572968221571664 12-13 24.361631968683273 24.867236890291093 29.27519404568242 21.495937095343216 14-15 21.655214458413617 26.432919956538537 26.702215097221522 25.209650487826323 16-17 21.47628711377164 29.42855216849467 27.368675011303345 21.726485706430342 18-19 21.48648511515422 29.128553186321714 28.440879634239945 20.94408206428412 20-21 22.57651836615401 28.190644337676886 28.111633270827767 21.121204025341335 22-23 22.266348603886282 28.096239727733973 27.87641174134683 21.76099992703292 24-25 21.901446329833917 28.280018860288987 28.017049799577304 21.8014850102998 26-27 21.868761605088732 28.428248696446868 27.87250744518014 21.830482253284263 28-29 21.782075890801405 28.53203117192567 27.92806461464646 21.757828322626462 30-31 22.046737272685935 28.306260117168097 27.87980488916397 21.767197720981997 32-33 21.856781195602256 28.383741137298713 27.889836717058557 21.869640950040473 34-35 21.987759748140743 28.334295741113525 27.99460189085705 21.68334261988868 36-37 21.938276052852647 28.146450870784452 28.01008290973629 21.90519016662661 38-39 21.79295422763974 28.180082890375736 28.180308946816606 21.846653935167918 40-41 21.974068782280128 27.94107128789523 28.214722316523627 21.870137613301015 42-43 21.69463260967363 27.89658544641887 28.250199959573607 22.158581984333892 44-45 21.701484040379974 27.953278020844053 28.329424340579006 22.015813598196964 46-47 21.569658425249465 27.85301945340152 28.289918185435937 22.287403935913083 48-49 21.439113434512773 27.77937094790882 28.498855715546384 22.28265990203203 50-51 21.26534978485001 27.861444516634343 28.480055441232103 22.39315025728354 52-53 21.2468187259223 27.843144604388375 28.50532759887296 22.404709070816367 54-55 21.265451667619466 27.697089986049946 28.58083474473095 22.45662360159964 56-57 21.25400704167185 27.771660342291604 28.473825876107895 22.500506739928642 58-59 21.216045899492066 27.831424513429692 28.471587871221022 22.48094171585722 60-61 21.2911469026706 27.633502502146385 28.422744660999587 22.652605934183427 62-63 21.220120270050845 27.54671459559561 28.419027349789268 22.814137784564277 64-65 21.31254618231533 27.646093394803934 28.30688387002633 22.734476552854414 66-67 21.185947302531464 27.781763968086047 28.004231599845152 23.028057129537338 68-69 21.29605855458072 27.88052210653298 27.83555181809088 22.98786752079542 70-71 21.39096428329179 27.81458375527083 27.73024323451145 23.064208726925926 72-73 21.555332135070326 27.803104779993358 27.31317451521666 23.328388569719653 74-75 21.593407938579205 27.744956066797076 27.170458134313925 23.491177860309797 76-77 21.839152213815986 27.52504279492366 27.29600921405579 23.339795777204568 78-79 21.949314212258823 27.313598162594026 27.41460165593146 23.322485969215688 80-81 22.07951131217244 27.23822941960522 27.41191754800421 23.27034172021813 82-83 22.04613896570691 27.343143061922902 27.404630322306218 23.20608765006397 84-85 22.234950092751788 27.16309139278262 27.43110178911105 23.17085672535454 86-87 21.859584179614387 27.42346282454572 27.71473829298453 23.002214702855362 88-89 22.02566597156561 27.518214205604668 27.489692881957673 22.96642694087205 90-91 22.000644366825668 27.80541104380876 27.69873299087188 22.495211598493693 92-93 21.742451536213224 27.80775693020892 27.99875848640979 22.451033047168064 94-95 21.49935929815233 27.836504940404982 28.292606672869862 22.37152908857282 96-97 21.60144561381777 27.77945578815808 28.525117561891868 22.093981036132277 98-99 22.973018704952235 29.83006740184257 28.626118553993113 18.570795339212083 100 22.411593390433197 30.962824057976274 22.3845786761525 24.241003875438032 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2957.0 1 2219.0 2 1610.5 3 1738.5 4 1734.0 5 1876.5 6 2175.0 7 2553.5 8 2903.5 9 3281.0 10 3736.0 11 4084.0 12 4487.5 13 5027.0 14 5807.5 15 6900.0 16 8237.0 17 9777.5 18 11639.0 19 14000.5 20 17152.5 21 21217.0 22 26664.0 23 34362.5 24 44044.5 25 56293.5 26 71901.0 27 89660.0 28 108344.0 29 130915.0 30 153726.5 31 173617.5 32 194967.0 33 215640.0 34 235440.5 35 252532.5 36 270232.5 37 290624.5 38 305689.5 39 315440.0 40 327956.0 41 339615.5 42 346060.5 43 353821.5 44 360934.0 45 367979.5 46 371769.0 47 371151.5 48 368792.0 49 361648.0 50 353999.0 51 344935.5 52 329485.5 53 308581.0 54 285302.0 55 261155.0 56 235872.0 57 208732.0 58 183244.5 59 159178.0 60 130939.0 61 104182.0 62 81792.5 63 62483.5 64 47639.0 65 36694.5 66 28391.0 67 21888.0 68 17229.5 69 13413.5 70 10503.0 71 8176.0 72 6211.5 73 4768.0 74 3605.0 75 2720.0 76 2099.5 77 1626.5 78 1227.5 79 917.5 80 690.0 81 520.0 82 406.0 83 283.0 84 208.5 85 183.0 86 168.0 87 138.5 88 85.5 89 45.0 90 26.5 91 20.5 92 19.5 93 14.5 94 13.0 95 13.5 96 10.0 97 8.0 98 5.0 99 8.5 100 22.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 2.3417926690515035E-4 6 0.0 7 0.0 8 2.2302787324300035E-5 9 0.0 10-11 7.248405880397511E-5 12-13 1.4496811760795022E-4 14-15 5.0181271479675084E-5 16-17 1.393924207768752E-4 18-19 8.921114929720013E-4 20-21 4.072431258197163E-4 22-23 0.0 24-25 5.028513908757727E-5 26-27 1.7336126351057452E-4 28-29 0.0 30-31 0.0 32-33 2.8078058575210364E-5 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 6.86493239786425E-5 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 1.1629003690005282E-4 76-77 1.8560755694981203E-5 78-79 3.3177362171847715E-4 80-81 5.072109225843335E-5 82-83 3.213171019356656E-5 84-85 4.16830956680452E-4 86-87 9.907993055421614E-5 88-89 4.024644238218693E-5 90-91 1.3646055437100214E-5 92-93 5.490317685765768E-4 94-95 3.9700316489505187E-4 96-97 3.053121478687794E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 3206.0 20-21 6434.0 22-23 7054.0 24-25 7632.0 26-27 9618.0 28-29 12079.0 30-31 14299.0 32-33 14668.0 34-35 16860.0 36-37 22116.0 38-39 24543.0 40-41 21656.0 42-43 15289.0 44-45 15708.0 46-47 16192.0 48-49 16075.0 50-51 15997.0 52-53 15617.0 54-55 15598.0 56-57 15705.0 58-59 15285.0 60-61 17093.0 62-63 46473.0 64-65 76798.0 66-67 82135.0 68-69 84977.0 70-71 85177.0 72-73 83158.0 74-75 85699.0 76-77 92314.0 78-79 99523.0 80-81 105729.0 82-83 103639.0 84-85 105946.0 86-87 113125.0 88-89 123235.0 90-91 131962.0 92-93 139522.0 94-95 155110.0 96-97 328826.0 98-99 597580.0 100-101 6007837.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 80.03561571420498 #Duplication Level Percentage of deduplicated Percentage of total 1 86.40623678539474 69.15576362666455 2 8.937085761900718 14.305703232887575 3 2.4672353527264703 5.924001017019502 4 0.9772836647044447 3.1286999932821953 5 0.46984763352215764 1.880227232040401 6 0.2556581258280633 1.2277053307793242 7 0.14543932754875605 0.8148228290597236 8 0.0889496969134958 0.5695315008050844 9 0.061863967843369054 0.44561886811810375 >10 0.18678376337293984 2.1882265386672963 >50 0.0027790749810250857 0.14600208431876874 >100 7.114476999223254E-4 0.11765087205415652 >500 5.01594623492186E-5 0.02179897075895575 >1k 7.523810153867977E-5 0.07424790354436422 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 2.2302787324300035E-5 0.0 2 0.0 2.2302787324300035E-5 0.0 2.2302787324300035E-5 0.0 3 0.0 2.2302787324300035E-5 0.0 2.2302787324300035E-5 0.0 4 0.0 1.226653302836502E-4 0.0 2.2302787324300035E-5 0.0 5 0.0 1.226653302836502E-4 0.0 6.69083619729001E-5 0.0 6 0.0 1.226653302836502E-4 0.0 6.69083619729001E-5 1.1151393662150018E-5 7 0.0 1.226653302836502E-4 0.0 6.69083619729001E-5 1.1151393662150018E-5 8 0.0 1.5611951127010026E-4 0.0 8.921114929720014E-5 1.1151393662150018E-5 9 0.0 2.3417926690515037E-4 0.0 8.921114929720014E-5 2.2302787324300035E-5 10-11 0.0 2.3417926690515037E-4 0.0 1.6727090493225024E-4 3.345418098645005E-5 12-13 0.0 2.3417926690515037E-4 0.0 2.3417926690515037E-4 3.345418098645005E-5 14-15 0.0 4.014501718374006E-4 0.0 2.732091447226754E-4 5.0181271479675084E-5 16-17 0.0 4.1260156549955063E-4 0.0 2.8993623521590044E-4 8.363545246612514E-5 18-19 0.0 4.293286559927757E-4 0.0 3.122390225402005E-4 8.921114929720014E-5 20-21 0.0 4.460557464860007E-4 0.0 4.181772623306257E-4 9.478684612827515E-5 22-23 0.0 4.8508562430352577E-4 0.0 8.475059183234014E-4 1.1151393662150018E-4 24-25 0.0 5.129641084589008E-4 0.0 0.0017897986827750778 1.4496811760795022E-4 26-27 0.0 5.241155021210508E-4 0.0 0.004382497709224957 1.4496811760795022E-4 28-29 0.0 5.241155021210508E-4 0.0 0.017340417144643277 1.4496811760795022E-4 30-31 0.0 6.13326651418251E-4 0.0 0.06340124866615393 1.4496811760795022E-4 32-33 0.0 6.13326651418251E-4 0.0 0.1818123222676939 1.4496811760795022E-4 34-35 0.0 7.136891943776011E-4 0.0 0.34719306597420974 1.6727090493225027E-4 36-37 0.0 8.196274341680263E-4 0.0 0.6011883594170007 1.7842229859440028E-4 38-39 0.0 8.642330088166264E-4 0.0 0.9488386325313585 1.951493890876253E-4 40-41 0.0 9.590198549449015E-4 0.0 1.321964264466898 2.007250859187003E-4 42-43 0.0 9.868983391002764E-4 0.0 1.7608050592534878 2.007250859187003E-4 44-45 0.0 0.0010872608820596268 0.0 2.2936521026120023 2.007250859187003E-4 46-47 0.0 0.0011597449408636018 0.0 2.8915284981113443 2.2302787324300036E-4 48-49 0.0 0.0011708963345257518 0.0 3.4964804528893207 2.564820542294504E-4 50-51 0.0 0.001332591542626927 0.0 4.104214680386003 2.564820542294504E-4 52-53 0.0 0.0013493186331201522 0.0 4.691341132395033 2.787848415537504E-4 54-55 0.0 0.001354894329951227 0.0 5.284701213461204 3.010876288780505E-4 56-57 0.0 0.0013716214204444522 0.0 5.929162555984178 3.010876288780505E-4 58-59 0.0 0.0013939242077687522 0.0 6.599238649749111 3.010876288780505E-4 60-61 0.0 0.0014496811760795023 0.0 7.27095957407921 3.010876288780505E-4 62-63 0.0 0.0015165895380524024 0.0 7.918286824773356 3.2339041620235053E-4 64-65 0.0 0.0016838604429846526 0.0 8.082992909163313 3.2339041620235053E-4 66-67 0.0 0.0017061632303089528 0.0 8.086806685795768 3.2896611303342554E-4 68-69 0.0 0.0017396174112954028 0.0 8.090207860862723 3.3454180986450054E-4 70-71 0.0 0.0017619201986197029 0.0 8.093118374608544 3.3454180986450054E-4 72-73 0.0 0.0017730715922818529 0.0 8.095750103512811 3.679959908509506E-4 74-75 0.0 0.0018121014700993778 0.0 8.097896746792776 3.679959908509506E-4 76-77 0.0 0.001851131347916903 0.0 8.099909573348793 3.679959908509506E-4 78-79 0.0 0.001862282741579053 0.0 8.101520949732974 3.679959908509506E-4 80-81 0.0 0.001873434135241203 0.0 8.10226809310834 3.679959908509506E-4 82-83 0.0 0.001895736922565503 0.0 8.10274202733898 3.791473845131006E-4 84-85 0.0 0.001929191103551953 0.0 8.102942752424898 3.791473845131006E-4 86-87 0.0 0.0019737966782005533 0.0 8.102959479515391 3.847230813441756E-4 88 0.0 0.0020407050401734534 0.0 8.102970630909054 3.902987781752506E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7705 0.0 41.514088 1 GTATCAA 13080 0.0 33.368572 1 ATCAACG 14065 0.0 29.37376 3 TCAACGC 14060 0.0 29.352915 4 CAACGCA 14265 0.0 28.83872 5 AACGCAG 14945 0.0 27.585434 6 TATCAAC 15690 0.0 27.032598 2 ACGCAGA 17865 0.0 23.052017 7 CGCAGAG 18275 0.0 22.486696 8 GTACATG 30820 0.0 22.013317 1 TCGGTGG 3890 0.0 21.785357 94 TACATGG 30695 0.0 21.486599 2 ACATGGG 30905 0.0 20.799608 3 CATGGGG 23090 0.0 18.04512 4 GCAGAGT 22870 0.0 17.660892 9 GGACCGA 1420 0.0 16.42191 6 AGAGTAC 19935 0.0 16.144857 10-11 CAGAGTA 22425 0.0 15.921802 10-11 ATGGGGG 13935 0.0 15.408097 5 GTACTAG 2430 0.0 15.390275 1 >>END_MODULE