##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140320_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10115493 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.532150632697782 31.0 31.0 34.0 28.0 34.0 2 31.65875454612049 33.0 31.0 34.0 28.0 34.0 3 31.710323560107252 33.0 31.0 34.0 28.0 34.0 4 35.25219017995465 37.0 35.0 37.0 32.0 37.0 5 35.311386899284095 37.0 35.0 37.0 32.0 37.0 6 35.36647447633052 37.0 35.0 37.0 32.0 37.0 7 35.253365011472994 37.0 35.0 37.0 32.0 37.0 8 35.21819490162269 37.0 35.0 37.0 32.0 37.0 9 36.78196505103607 39.0 37.0 39.0 32.0 39.0 10-11 36.7552658580259 39.0 37.0 39.0 32.0 39.0 12-13 36.696923669464255 39.0 37.0 39.0 32.0 39.0 14-15 37.98613661242215 40.0 38.0 41.0 32.0 41.0 16-17 37.99860031537761 40.0 38.0 41.0 32.0 41.0 18-19 38.011409429080715 40.0 38.0 41.0 32.0 41.0 20-21 38.06697214235634 40.0 38.0 41.0 32.0 41.0 22-23 38.04865520712214 40.0 38.0 41.0 32.0 41.0 24-25 38.054201497088144 40.0 38.0 41.0 32.0 41.0 26-27 38.021590218587356 40.0 38.0 41.0 32.0 41.0 28-29 37.99451626546151 40.0 38.0 41.0 32.0 41.0 30-31 37.94351226100814 40.0 37.0 41.0 32.0 41.0 32-33 37.901287655701736 40.0 37.0 41.0 32.0 41.0 34-35 37.853161879926 40.0 37.0 41.0 32.0 41.0 36-37 37.79989386880733 40.0 37.0 41.0 31.5 41.0 38-39 37.720571186010595 40.0 37.0 41.0 31.0 41.0 40-41 37.65570642165912 40.0 37.0 41.0 31.0 41.0 42-43 37.5771187045098 40.0 37.0 41.0 31.0 41.0 44-45 37.45875369286512 40.0 36.5 41.0 31.0 41.0 46-47 37.36096618406027 40.0 36.0 41.0 31.0 41.0 48-49 37.262467546487 40.0 36.0 41.0 31.0 41.0 50-51 37.12960287004161 39.0 36.0 41.0 30.0 41.0 52-53 37.00813325398258 39.0 35.0 41.0 30.0 41.0 54-55 36.871497513803405 39.0 35.0 40.5 30.0 41.0 56-57 36.699233146196406 39.0 35.0 40.0 30.0 41.0 58-59 36.85318353393262 39.0 35.0 40.5 30.5 41.0 60-61 36.92046516412681 39.0 35.0 41.0 31.0 41.0 62-63 36.765763236904434 39.0 35.0 40.5 30.5 41.0 64-65 36.57251540877812 38.0 35.0 40.0 30.0 41.0 66-67 36.314033614006476 38.0 35.0 40.0 30.0 41.0 68-69 36.05230040522855 37.0 34.0 40.0 30.0 41.0 70-71 35.837739944984186 37.0 34.0 39.5 30.0 41.0 72-73 35.61974646053595 36.0 34.0 39.0 30.0 41.0 74-75 35.3654748710005 36.0 34.0 39.0 30.0 41.0 76-77 35.135214882624496 35.5 34.0 38.5 30.0 40.0 78-79 34.84278155422592 35.0 34.0 37.0 30.0 39.0 80-81 34.55991314035733 35.0 34.0 37.0 30.0 39.0 82-83 34.297575993773634 35.0 34.0 36.5 29.5 39.0 84-85 34.08184780537431 35.0 34.0 36.0 29.0 37.0 86-87 33.89561962303601 35.0 34.0 36.0 29.0 37.0 88-89 33.755341995531225 35.0 34.0 35.5 29.0 37.0 90-91 33.64447263051842 35.0 34.0 35.0 29.0 36.0 92-93 33.55596112380867 35.0 33.0 35.0 29.0 36.0 94-95 33.536382694161105 35.0 33.0 35.0 29.5 36.0 96-97 33.54832276156698 35.0 33.0 35.0 30.0 36.0 98-99 33.59710224518051 35.0 33.5 35.0 30.0 36.0 100 33.25062569120777 35.0 33.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 1.0 15 5.0 16 74.0 17 524.0 18 1815.0 19 5900.0 20 15076.0 21 29893.0 22 47904.0 23 66993.0 24 86787.0 25 105899.0 26 121130.0 27 130640.0 28 145129.0 29 172314.0 30 201420.0 31 231777.0 32 285047.0 33 363961.0 34 487220.0 35 668322.0 36 999507.0 37 1747108.0 38 2500560.0 39 1617289.0 40 83197.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.787591865270436 20.68574413525866 14.49839370162186 24.02827029784905 2 13.871839958764246 20.91634090399746 42.41964281918835 22.792176318049943 3 17.652861803176574 26.363816375534043 30.46648344277437 25.51683837851502 4 12.097304599983412 18.0858906234229 39.92866190505989 29.888142871533795 5 13.051513729751573 38.40413671009912 35.86388107413214 12.68046848601717 6 29.433661809661675 38.16763058409511 19.527362630768465 12.871344975474749 7 26.331017809118922 32.861713498463544 23.520319130300336 17.286949562117197 8 24.11695603961171 37.05494136568529 21.553798712529385 17.274303882173612 9 25.37295018641207 17.500185112084996 21.548094591138565 35.57877011036437 10-11 23.782400863309594 27.139336446413548 29.331103617763272 19.747159072513586 12-13 24.43286066016729 24.69375283816198 29.231020787295197 21.642365714375533 14-15 21.75207915028935 26.285739678169833 26.59324330342656 25.368937868114255 16-17 21.581364091201984 29.306349415677868 27.246170770705735 21.866115722414413 18-19 21.67656246910651 29.04051742887083 28.314253514443323 20.968666587579335 20-21 22.61443023947917 28.06722541940831 28.015430312384044 21.302914028728477 22-23 22.31145626123463 27.9628577606503 27.803612664284465 21.922073313830605 24-25 22.06215007133284 28.127242544884588 27.86964361426526 21.94096376951731 26-27 21.98793121937878 28.28397744772115 27.73206505451318 21.996026278386896 28-29 21.89640674098735 28.415204947638696 27.776190747968887 21.91219756340507 30-31 22.275392752558236 28.140578256519944 27.76084540197523 21.823183588946588 32-33 22.030119875671474 28.239732173700517 27.69997316305719 22.03017478757082 34-35 22.110670411569018 28.331643197399508 27.83147618782087 21.726210203210602 36-37 22.090647026445716 28.165702583503233 27.833757314448288 21.909893075602756 38-39 21.97769700494035 28.263151497124305 27.892906612683838 21.86624488525151 40-41 22.190510881847338 28.08642686145718 27.820848925087528 21.902213331607957 42-43 21.97896013456674 28.10257715022856 27.817730358583493 22.100732356621208 44-45 22.032056705018512 28.183893469005884 27.79831631048163 21.985733515493973 46-47 21.96565654515149 28.10717763849822 27.736011583151775 22.191154233198514 48-49 21.903494173912854 28.146055114733176 27.856198772030876 22.094251939323094 50-51 21.903736504993017 28.146758533959993 27.78153275569908 22.167972205347912 52-53 22.002717609020266 28.116289361372637 27.71913881798526 22.161854211621836 54-55 21.95046535558945 27.994680472072016 27.841391590416105 22.21346258192243 56-57 22.02223915290148 28.04935394687068 27.818153910176786 22.110252990051055 58-59 21.983568611137176 28.194747635112787 27.859831390468155 21.961852363281885 60-61 22.133644143290905 28.094019005512155 27.819879209371855 21.95245764182508 62-63 22.07011927224333 28.121991689570248 27.743057923346235 22.064831114840192 64-65 21.94064363960483 28.08393094780634 27.826571212714228 22.148854199874606 66-67 22.046209246752646 28.11730416736971 27.704844601542234 22.13164198433541 68-69 21.95394494555464 28.063039605125383 27.814323713577068 22.16869173574291 70-71 21.92703844806898 27.879333067605195 27.87374510573905 22.319883378586777 72-73 22.008295631253187 27.985933733534146 27.79948313727297 22.206287497939698 74-75 21.82492976764522 28.076595896685458 27.9038313636656 22.194642972003724 76-77 21.941657820710315 28.009318676447197 27.80402169703463 22.245001805807853 78-79 21.92007399602169 28.05753711889415 27.74320347121276 22.279185413871403 80-81 21.954207183443895 28.07817664122649 27.82093814670729 22.146678028622325 82-83 21.988470972696135 28.068662483128154 27.965414437932058 21.977452106243657 84-85 22.106229871417487 28.078275924300023 27.771181912219745 22.04431229206275 86-87 21.831082927753965 28.233335865161337 27.879003290727212 22.056577916357494 88-89 21.91277428250407 28.114334920020944 27.864096127482323 22.10879466999266 90-91 21.972030214686992 28.16624256962702 27.865367557106964 21.996359658579028 92-93 22.015474343518395 28.156276522247005 27.877168240792756 21.951080893441848 94-95 21.789094898600496 28.29325413946512 27.898021440697505 22.01962952123688 96-97 21.778997732554895 28.426846769553855 27.99314257393963 21.80101292395162 98-99 22.860856446771745 30.316844051679396 28.15029843401725 18.672001067531603 100 21.854355874449116 31.40723174730918 21.881940110490724 24.856472267750984 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2998.0 1 2276.5 2 1705.0 3 1874.0 4 1877.0 5 1977.0 6 2280.0 7 2680.0 8 3062.0 9 3486.5 10 3972.0 11 4379.5 12 4833.5 13 5503.0 14 6416.5 15 7606.5 16 9124.5 17 11045.5 18 13449.5 19 16559.0 20 20793.0 21 26443.5 22 34152.0 23 44053.0 24 56852.5 25 73957.0 26 95375.0 27 118428.0 28 141840.5 29 168651.5 30 195399.0 31 220518.5 32 246819.0 33 270817.5 34 295180.0 35 318848.0 36 342191.0 37 366599.0 38 381777.5 39 391015.0 40 404315.0 41 416322.5 42 422283.5 43 427016.0 44 431739.0 45 437405.5 46 441085.0 47 440492.0 48 436366.5 49 427265.0 50 416041.0 51 403833.5 52 387710.0 53 365822.0 54 342439.5 55 316733.0 56 290085.5 57 262174.5 58 232813.5 59 203110.5 60 169310.0 61 137149.0 62 109134.0 63 85431.5 64 65967.5 65 50022.5 66 37551.0 67 28636.5 68 22423.5 69 17235.0 70 13380.0 71 10427.5 72 8072.5 73 6176.0 74 4684.0 75 3566.0 76 2694.5 77 2059.0 78 1557.0 79 1144.5 80 843.5 81 648.0 82 514.0 83 366.0 84 258.5 85 196.5 86 156.0 87 120.5 88 77.0 89 46.0 90 34.0 91 31.0 92 26.5 93 19.5 94 14.5 95 11.0 96 8.5 97 8.5 98 6.0 99 10.5 100 36.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 1.4828738451007776E-4 6 0.0 7 9.885825634005184E-6 8 0.0 9 0.0 10-11 2.471456408501296E-5 12-13 1.1368699479105962E-4 14-15 2.471456408501296E-5 16-17 1.0874408197405703E-4 18-19 9.193817839624821E-4 20-21 4.0062899741802034E-4 22-23 0.0 24-25 8.918764768917035E-5 26-27 1.587263952769374E-4 28-29 0.0 30-31 0.0 32-33 6.489583893371944E-5 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 5.8615988064932234E-5 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 1.3274709000276838E-4 76-77 6.102763581563039E-6 78-79 4.19924918659617E-4 80-81 3.7517450304072676E-5 82-83 3.799607677841904E-5 84-85 4.103032532111519E-4 86-87 9.088605070506802E-5 88-89 1.9734916652539756E-5 90-91 2.0018737538335882E-5 92-93 5.486893369746435E-4 94-95 3.579931153793223E-4 96-97 3.5882733538197944E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 4376.0 20-21 8342.0 22-23 9246.0 24-25 10256.0 26-27 13237.0 28-29 17760.0 30-31 28440.0 32-33 33930.0 34-35 43832.0 36-37 63345.0 38-39 73889.0 40-41 71403.0 42-43 74968.0 44-45 84078.0 46-47 86802.0 48-49 87237.0 50-51 85382.0 52-53 83163.0 54-55 88659.0 56-57 91930.0 58-59 91485.0 60-61 91927.0 62-63 88192.0 64-65 91965.0 66-67 96340.0 68-69 97447.0 70-71 96160.0 72-73 92544.0 74-75 92646.0 76-77 95073.0 78-79 99372.0 80-81 101837.0 82-83 97393.0 84-85 96407.0 86-87 99561.0 88-89 106218.0 90-91 111090.0 92-93 115479.0 94-95 134906.0 96-97 326952.0 98-99 589528.0 100-101 6242696.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.66295624606774 #Duplication Level Percentage of deduplicated Percentage of total 1 89.00739415667582 73.57614328749798 2 7.150734118291907 11.822016430952553 3 1.9759451376281527 4.900123993691588 4 0.7904771182992778 2.613727017739637 5 0.4051187933603818 1.67441585450045 6 0.20802124361809735 1.0317390575673226 7 0.13529210993193777 0.7828552034619369 8 0.08675102690578368 0.5736877073131393 9 0.05892307032124434 0.4383679665464095 >10 0.17701197532150678 2.238797238388631 >50 0.003181487257606801 0.17518465287401588 >100 0.001106389216391686 0.14422294725890084 >500 4.3373171893533485E-5 0.028718642207505 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.9657476902015553E-5 0.0 9.885825634005184E-6 0.0 3 0.0 2.9657476902015553E-5 0.0 1.9771651268010367E-5 0.0 4 0.0 6.920077943803629E-5 0.0 1.9771651268010367E-5 0.0 5 0.0 6.920077943803629E-5 0.0 3.9543302536020735E-5 0.0 6 0.0 6.920077943803629E-5 0.0 3.9543302536020735E-5 0.0 7 0.0 6.920077943803629E-5 0.0 3.9543302536020735E-5 0.0 8 0.0 8.897243070604666E-5 0.0 4.942912817002592E-5 0.0 9 0.0 1.4828738451007776E-4 0.0 5.9314953804031106E-5 0.0 10-11 0.0 1.4828738451007776E-4 0.0 6.920077943803629E-5 0.0 12-13 0.0 1.4828738451007776E-4 0.0 7.908660507204147E-5 4.942912817002592E-6 14-15 0.0 1.9771651268010368E-4 0.0 1.0380116915705443E-4 1.4828738451007775E-5 16-17 0.0 1.9771651268010368E-4 0.0 1.0874408197405702E-4 2.9657476902015553E-5 18-19 0.0 2.1748816394811404E-4 0.0 1.1862990760806221E-4 2.9657476902015553E-5 20-21 0.0 2.3725981521612442E-4 0.0 1.5817321014408297E-4 3.4600389719018146E-5 22-23 0.0 2.6691729211814E-4 0.0 2.3725981521612442E-4 4.942912817002592E-5 24-25 0.0 3.015176818371581E-4 0.0 3.707184612751944E-4 5.9314953804031106E-5 26-27 0.0 3.064605946541607E-4 0.0 6.771790559293551E-4 5.9314953804031106E-5 28-29 0.0 3.064605946541607E-4 0.0 0.002624686705828376 5.9314953804031106E-5 30-31 0.0 3.460038971901814E-4 0.0 0.00842766635298942 5.9314953804031106E-5 32-33 0.0 3.460038971901814E-4 0.0 0.02404232794190061 5.9314953804031106E-5 34-35 0.0 3.9543302536020736E-4 0.0 0.04076914491463737 6.920077943803629E-5 36-37 0.0 4.349763278962281E-4 0.0 0.059468184101358186 6.920077943803629E-5 38-39 0.0 4.5474797916423843E-4 0.0 0.07852805592372017 6.920077943803629E-5 40-41 0.0 5.041771073342644E-4 0.0 0.0963175991521125 7.908660507204147E-5 42-43 0.0 5.190058457852722E-4 0.0 0.11278738465836514 7.908660507204147E-5 44-45 0.0 5.58549148321293E-4 0.0 0.12647925316146233 7.908660507204147E-5 46-47 0.0 5.832637124063058E-4 0.0 0.13971637368539525 8.897243070604666E-5 48-49 0.0 5.931495380403109E-4 0.0 0.15115427394393927 1.0874408197405702E-4 50-51 0.0 6.574074046613447E-4 0.0 0.16129713104442858 1.0874408197405702E-4 52-53 0.0 6.623503174783473E-4 0.0 0.17042174810461536 1.2851573324206738E-4 54-55 0.0 6.623503174783473E-4 0.0 0.1790718455343699 1.5323029732708035E-4 56-57 0.0 6.623503174783473E-4 0.0 0.1876725138359544 1.6311612296108553E-4 58-59 0.0 6.623503174783473E-4 0.0 0.19667850098853312 1.6805903577808812E-4 60-61 0.0 6.920077943803628E-4 0.0 0.20436473041897218 1.7794486141209332E-4 62-63 0.0 7.068365328313707E-4 0.0 0.21120572175770375 1.878306870460985E-4 64-65 0.0 7.908660507204147E-4 0.0 0.21559502833920208 1.878306870460985E-4 66-67 0.0 7.908660507204147E-4 0.0 0.21901058109575083 1.878306870460985E-4 68-69 0.0 8.0075187635442E-4 0.0 0.22269799405723478 1.927735998631011E-4 70-71 0.0 8.106377019884251E-4 0.0 0.2260048027318095 1.9771651268010368E-4 72-73 0.0 8.106377019884251E-4 0.0 0.22856523157101685 2.1748816394811404E-4 74-75 0.0 8.155806148054277E-4 0.0 0.23078459942585103 2.1748816394811404E-4 76-77 0.0 8.551239173414484E-4 0.0 0.2329841956294172 2.2737398958211922E-4 78-79 0.0 8.699526557924562E-4 0.0 0.23465984307438104 2.3725981521612442E-4 80-81 0.0 8.699526557924562E-4 0.0 0.23539139417129745 2.42202728033127E-4 82-83 0.0 8.699526557924562E-4 0.0 0.23582637049919367 2.718602049351426E-4 84-85 0.0 8.748955686094588E-4 0.0 0.23603891575032476 2.7680311775214516E-4 86-87 0.0 8.996101326944717E-4 0.0 0.2360932877913118 2.7680311775214516E-4 88 0.0 9.68810912132508E-4 0.0 0.23611305944257982 2.7680311775214516E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8360 0.0 38.408077 1 GTATCAA 14175 0.0 31.127989 1 TCAACGC 14655 0.0 28.108833 4 ATCAACG 14840 0.0 27.814837 3 CAACGCA 15040 0.0 27.305786 5 AACGCAG 15835 0.0 26.199263 6 TATCAAC 16880 0.0 25.048542 2 ACGCAGA 19010 0.0 21.581293 7 CGCAGAG 19385 0.0 21.163807 8 GTACATG 32730 0.0 20.579914 1 ACCGAAC 1490 0.0 20.510208 8 TACATGG 32085 0.0 20.341248 2 ACATGGG 32340 0.0 19.624231 3 GGACCGA 1895 0.0 18.777735 6 CATGGGG 25090 0.0 18.153555 4 GCAGAGT 24110 0.0 16.85992 9 TATACCG 865 0.0 16.45494 5 CCGAACC 1680 0.0 16.446299 9 GTACTAG 2745 0.0 16.3183 1 AGGACCG 2545 0.0 15.297789 5 >>END_MODULE