##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140319_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10103834 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.828783608281768 33.0 31.0 34.0 30.0 34.0 2 31.94944493347773 34.0 31.0 34.0 30.0 34.0 3 32.00046705042858 34.0 31.0 34.0 30.0 34.0 4 35.51267241722301 37.0 35.0 37.0 33.0 37.0 5 35.57412126921325 37.0 35.0 37.0 33.0 37.0 6 35.624851417788534 37.0 35.0 37.0 33.0 37.0 7 35.519786944243144 37.0 35.0 37.0 33.0 37.0 8 35.49199086208265 37.0 35.0 37.0 33.0 37.0 9 37.10942519443609 39.0 37.0 39.0 33.0 39.0 10-11 37.090025182519824 39.0 37.0 39.0 33.0 39.0 12-13 37.04020166997993 39.0 37.0 39.0 33.0 39.0 14-15 38.40653740946259 40.0 38.0 41.0 33.0 41.0 16-17 38.41915098763499 40.0 38.0 41.0 33.0 41.0 18-19 38.43487244544991 40.0 38.0 41.0 33.0 41.0 20-21 38.488376318624525 40.0 38.0 41.0 33.0 41.0 22-23 38.47031034808197 40.0 38.0 41.0 33.0 41.0 24-25 38.481792047054704 40.0 38.0 41.0 33.0 41.0 26-27 38.4620816477067 40.0 38.0 41.0 33.0 41.0 28-29 38.435409115181045 40.0 38.0 41.0 33.0 41.0 30-31 38.38626908737136 40.0 38.0 41.0 33.0 41.0 32-33 38.34544808737957 40.0 38.0 41.0 33.0 41.0 34-35 38.29372720315757 40.0 38.0 41.0 33.0 41.0 36-37 38.23702814997745 40.0 38.0 41.0 33.0 41.0 38-39 38.160556236892006 40.0 38.0 41.0 33.0 41.0 40-41 38.09942487717052 40.0 38.0 41.0 33.0 41.0 42-43 38.018080697172586 40.0 38.0 41.0 32.5 41.0 44-45 37.90583119902839 40.0 37.0 41.0 32.0 41.0 46-47 37.81229116683507 40.0 37.0 41.0 32.0 41.0 48-49 37.71880319040727 40.0 37.0 41.0 32.0 41.0 50-51 37.588783363153695 40.0 37.0 41.0 31.0 41.0 52-53 37.47290692993075 40.0 36.0 41.0 31.0 41.0 54-55 37.34048177251222 39.5 36.0 41.0 31.0 41.0 56-57 37.17179456538684 39.0 36.0 41.0 31.0 41.0 58-59 37.316287352194664 39.0 36.0 41.0 31.0 41.0 60-61 37.37489063662584 39.0 36.0 41.0 31.0 41.0 62-63 37.22132221817466 39.0 35.0 41.0 31.0 41.0 64-65 37.023463747422376 39.0 35.0 41.0 31.0 41.0 66-67 36.764232098731476 38.0 35.0 40.0 31.0 41.0 68-69 36.49925077511242 37.5 35.0 40.0 31.0 41.0 70-71 36.2720084916449 37.0 35.0 40.0 31.0 41.0 72-73 36.03905025328993 37.0 35.0 39.0 31.0 41.0 74-75 35.77608150363432 36.0 35.0 39.0 31.0 41.0 76-77 35.52786927051747 36.0 34.0 39.0 31.0 40.5 78-79 35.22093828838375 35.5 34.0 37.5 30.5 39.5 80-81 34.924100928146174 35.0 34.0 37.0 30.0 39.0 82-83 34.64668056065973 35.0 34.0 37.0 30.0 39.0 84-85 34.41308871432193 35.0 34.0 36.0 30.0 38.0 86-87 34.213080298559746 35.0 34.0 36.0 30.0 37.0 88-89 34.05637154800969 35.0 34.0 36.0 30.0 37.0 90-91 33.934350429754645 35.0 34.0 35.0 30.0 36.5 92-93 33.833341541312656 35.0 34.0 35.0 30.0 36.0 94-95 33.798013854657796 35.0 34.0 35.0 30.0 36.0 96-97 33.79154061656909 35.0 34.0 35.0 30.0 36.0 98-99 33.81773082197278 35.0 34.0 35.0 30.0 36.0 100 33.480594930314105 35.0 33.0 35.0 30.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 4.0 15 4.0 16 38.0 17 310.0 18 1333.0 19 4110.0 20 10483.0 21 21633.0 22 35567.0 23 50203.0 24 66010.0 25 82845.0 26 95598.0 27 102164.0 28 117248.0 29 141276.0 30 166944.0 31 195430.0 32 246078.0 33 320247.0 34 433309.0 35 609032.0 36 931652.0 37 1714537.0 38 2712246.0 39 1927773.0 40 117760.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.773027347836475 20.849204371330725 14.402107160509564 23.975661120323235 2 13.812331041859952 21.123674438831834 42.592465394819435 22.471529124488786 3 17.592430754503685 26.586254287233935 30.62676009918611 25.19455485907627 4 11.998653184523816 18.25736646108794 40.23576594785702 29.508214406531224 5 12.958209168236287 38.34180917136381 36.08802770516772 12.611953955232174 6 29.063393163426877 38.50654118030838 19.73311319247723 12.69695246378751 7 26.005930026166308 32.92601600540943 23.923156298886145 17.144897669538118 8 23.70707990649886 37.36281692672306 21.826051378120425 17.10405178865765 9 24.995184996111377 17.78419954247071 21.962850933615893 35.257764527802024 10-11 23.48539759397215 27.367177491033974 29.632625009631248 19.514799905362633 12-13 24.170954894993706 24.870749418314237 29.53342512037275 21.424870566319303 14-15 21.51091890239856 26.484561821918746 26.832405112852488 25.172114162830212 16-17 21.397519187163315 29.502533471109533 27.535342925310815 21.564604416416337 18-19 21.455063030614106 29.218103472763207 28.517768814541068 20.80906468208162 20-21 22.398574439393744 28.277392975147304 28.24761293011433 21.076419655344623 22-23 22.08140117157319 28.18147058771075 28.03027795981156 21.7068502809045 24-25 21.842534096007945 28.33779082844169 28.093016518287577 21.726658557262787 26-27 21.819323158946172 28.490576297881354 27.955630098133838 21.734470445038642 28-29 21.730335211245077 28.582972113355794 27.999899068514644 21.68679360688448 30-31 22.01641879648732 28.332621564558817 27.99146016789185 21.65949947106201 32-33 21.785510975055686 28.456543440596704 27.965889901655792 21.79205568269182 34-35 21.926504684395407 28.432316095185957 28.02858735577819 21.61259186464045 36-37 21.90406204399944 28.293354200185355 28.05054430906024 21.75203944675497 38-39 21.778026691928577 28.4177807525177 28.139983050591972 21.664209504961754 40-41 21.98853200882946 28.238144674756754 28.048863393147816 21.724459923265968 42-43 21.796067171520622 28.314477398845373 28.020758232449612 21.868697197184396 44-45 21.856201110975487 28.380564453071834 28.015484045863264 21.74775039008942 46-47 21.807785349314145 28.284457101465442 27.938937930157227 21.968819619063186 48-49 21.79629630991785 28.27522151242646 28.055860610230077 21.872621567425618 50-51 21.75550395122861 28.334347284166256 28.008365624311075 21.901783140294054 52-53 21.836426738936336 28.31421464403558 27.938995424106324 21.91036319292177 54-55 21.8618088966331 28.216407427232564 28.00153020101086 21.920253475123477 56-57 21.894596738824056 28.293160846299426 27.976326383137568 21.83591603173895 58-59 21.834062550871568 28.345727843015784 28.02062778105926 21.79958182505339 60-61 21.950617788039324 28.285071353051173 27.966399484994486 21.797911373915017 62-63 21.87722460643178 28.355502589302557 27.928462174471935 21.83881062979373 64-65 21.835730646537414 28.281119391982806 27.975417636034226 21.907732325445554 66-67 21.89197431484584 28.33116769003406 27.864556493696284 21.912301501423816 68-69 21.844215962560064 28.265974025734035 27.973427590339593 21.916382421366308 70-71 21.858388316186108 28.0754407822679 28.004914918873364 22.061255982672623 72-73 21.913363468114465 28.136484144658752 28.013721046692464 21.93643134053432 74-75 21.74759287504852 28.264187167519484 28.032182957004213 21.95603700042778 76-77 21.87242800215031 28.2473133938206 27.940770596108035 21.939488007921053 78-79 21.82842522317405 28.22171525005369 27.92401362396042 22.025845902811835 80-81 21.84449959868746 28.23586166407313 27.947752341154423 21.971886396084987 82-83 21.828911392069823 28.218191048899715 28.11750887863211 21.835388680398353 84-85 21.968070052457072 28.246932611183702 27.95842786872785 21.82656946763138 86-87 21.735749319438657 28.299895402511734 28.041639786350313 21.922715491699297 88-89 21.824253737622705 28.25020097529654 27.993101466310588 21.932443820770168 90-91 21.81437298093046 28.351743985458633 28.018578653753366 21.81530437985754 92-93 21.852248893899926 28.30851322937059 28.045757512109205 21.793480364620283 94-95 21.662152278171387 28.43868987889288 28.06277548317458 21.836382359761156 96-97 21.75602004348559 28.554969160053645 28.12461085023919 21.56439994622157 98-99 22.827602393419795 30.498033285974635 28.279530328219373 18.3948339923862 100 21.828318232507364 31.452134839193018 22.087088989300387 24.632457938999234 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2794.0 1 2107.0 2 1591.0 3 1752.0 4 1715.5 5 1816.0 6 2119.5 7 2486.5 8 2827.5 9 3234.5 10 3727.0 11 4167.0 12 4625.5 13 5193.0 14 6007.5 15 7225.5 16 8903.5 17 10931.5 18 13514.5 19 17046.5 20 21566.5 21 27746.0 22 36407.0 23 47623.0 24 61744.0 25 79245.0 26 101132.5 27 126794.0 28 153641.5 29 182591.5 30 210086.0 31 235008.0 32 261224.0 33 285920.0 34 309735.5 35 331932.5 36 353913.0 37 374195.5 38 385914.0 39 393487.0 40 403167.5 41 410472.0 42 414321.5 43 419161.0 44 423911.5 45 428355.0 46 429601.5 47 425869.5 48 419586.5 49 410522.0 50 399515.0 51 385016.5 52 365568.0 53 343080.5 54 319468.5 55 294215.5 56 269223.5 57 243507.0 58 216214.5 59 189274.5 60 159173.0 61 129163.5 62 102616.5 63 80165.0 64 61775.5 65 46984.0 66 35872.0 67 28031.0 68 21941.5 69 16752.5 70 12959.0 71 9876.0 72 7391.5 73 5546.5 74 4188.5 75 3177.5 76 2430.5 77 1887.5 78 1456.5 79 1123.0 80 867.0 81 644.5 82 481.5 83 332.5 84 237.0 85 178.5 86 146.0 87 113.5 88 72.5 89 49.0 90 36.0 91 30.0 92 26.5 93 16.0 94 7.5 95 6.0 96 5.5 97 3.5 98 2.0 99 5.0 100 20.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 1.484584960520927E-4 6 0.0 7 0.0 8 0.0 9 0.0 10-11 2.4743082675348782E-5 12-13 1.0886956377153464E-4 14-15 2.4743082675348782E-5 16-17 8.412648109618587E-5 18-19 9.204426755229746E-4 20-21 4.3568288365826283E-4 22-23 0.0 24-25 6.940431319053265E-5 26-27 1.7861608259207658E-4 28-29 0.0 30-31 0.0 32-33 4.988341746504245E-5 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 3.7095748419177926E-5 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 1.3718511765741263E-4 76-77 1.2060066124136553E-5 78-79 4.3305859526770644E-4 80-81 4.937709559479773E-5 82-83 2.4984712479051878E-5 84-85 4.8021759417430347E-4 86-87 1.5343413401870657E-4 88-89 3.2363161272428885E-5 90-91 1.9677438249411138E-5 92-93 7.449101684893687E-4 94-95 5.332856661453518E-4 96-97 3.3749157390297504E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 3226.0 20-21 6150.0 22-23 6827.0 24-25 7782.0 26-27 10398.0 28-29 14552.0 30-31 24738.0 32-33 30081.0 34-35 39598.0 36-37 58829.0 38-39 66564.0 40-41 65586.0 42-43 70585.0 44-45 79379.0 46-47 82353.0 48-49 82240.0 50-51 79984.0 52-53 79614.0 54-55 84774.0 56-57 87996.0 58-59 87619.0 60-61 87600.0 62-63 84290.0 64-65 88030.0 66-67 93121.0 68-69 93560.0 70-71 93075.0 72-73 90256.0 74-75 90064.0 76-77 93361.0 78-79 96299.0 80-81 97101.0 82-83 92391.0 84-85 91508.0 86-87 94660.0 88-89 100513.0 90-91 104775.0 92-93 108115.0 94-95 125948.0 96-97 320922.0 98-99 595680.0 100-101 6393690.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.34838572754157 #Duplication Level Percentage of deduplicated Percentage of total 1 89.09711492710453 74.26100702155411 2 7.3030268199428745 12.1739099273436 3 1.9150388529144344 4.788461909878231 4 0.7365144885338382 2.4554917473696536 5 0.3554457320593397 1.4812913990445118 6 0.17745499362111739 0.8874352354566792 7 0.12192087386929053 0.7113335616447599 8 0.07489905849550405 0.49941724944903765 9 0.04845284465680411 0.3634619747446765 >10 0.16686020210527458 2.0921739145803366 >50 0.0026141950672552558 0.142027762277131 >100 5.526762552348328E-4 0.07351597926233672 >500 8.346957998330799E-5 0.04391579780250186 >1k 2.0865794568395093E-5 0.026556519592407065 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 9.897233070139513E-6 2 0.0 3.958893228055805E-5 0.0 0.0 9.897233070139513E-6 3 0.0 3.958893228055805E-5 0.0 0.0 9.897233070139513E-6 4 0.0 9.897233070139513E-5 0.0 9.897233070139513E-6 9.897233070139513E-6 5 0.0 9.897233070139513E-5 0.0 9.897233070139513E-6 9.897233070139513E-6 6 0.0 9.897233070139513E-5 0.0 9.897233070139513E-6 1.9794466140279026E-5 7 0.0 9.897233070139513E-5 0.0 9.897233070139513E-6 1.9794466140279026E-5 8 9.897233070139513E-6 1.0886956377153464E-4 0.0 3.958893228055805E-5 1.9794466140279026E-5 9 9.897233070139513E-6 2.1773912754306928E-4 0.0 8.907509763125562E-5 1.9794466140279026E-5 10-11 9.897233070139513E-6 2.1773912754306928E-4 0.0 8.907509763125562E-5 1.9794466140279026E-5 12-13 9.897233070139513E-6 2.1773912754306928E-4 0.0 1.0392094723646488E-4 1.9794466140279026E-5 14-15 1.9794466140279026E-5 3.66197623595162E-4 0.0 1.0886956377153464E-4 2.969169921041854E-5 16-17 1.9794466140279026E-5 3.7114624013023177E-4 0.0 1.2866402991181368E-4 3.958893228055805E-5 18-19 1.9794466140279026E-5 4.008379393406503E-4 0.0 1.484584960520927E-4 3.958893228055805E-5 20-21 1.9794466140279026E-5 4.2558102201599907E-4 0.0 1.7320157872744148E-4 4.453754881562781E-5 22-23 2.969169921041854E-5 5.196047361823244E-4 0.0 2.721739094288366E-4 5.443478188576732E-5 24-25 3.958893228055805E-5 5.789881346031615E-4 0.0 4.8496442043683617E-4 5.938339842083708E-5 26-27 3.958893228055805E-5 6.185770668837196E-4 0.0 9.847746904788814E-4 6.433201495590683E-5 28-29 3.958893228055805E-5 6.235256834187893E-4 0.0 0.0037065137847672475 6.928063149097659E-5 30-31 4.9486165350697564E-5 7.126007810500449E-4 0.0 0.013494877291135226 7.422924802604635E-5 32-33 4.9486165350697564E-5 7.32395247190324E-4 0.0 0.038940663514463916 7.91778645611161E-5 34-35 6.433201495590683E-5 8.660078936372074E-4 0.0 0.06578195960068228 8.907509763125562E-5 36-37 8.412648109618585E-5 9.897233070139512E-4 0.0 0.09547365881110081 9.897233070139513E-5 38-39 8.907509763125562E-5 9.996205400840908E-4 0.0 0.12280486793429109 9.897233070139513E-5 40-41 8.907509763125562E-5 0.0010590039385049278 0.0 0.14807250396235727 1.0886956377153464E-4 42-43 8.907509763125562E-5 0.001098592870785486 0.0 0.17023735742293472 1.0886956377153464E-4 44-45 8.907509763125562E-5 0.0012124110510920905 0.0 0.1863154125453763 1.0886956377153464E-4 46-47 8.907509763125562E-5 0.0012767430660479973 0.0 0.1986919024995858 1.2866402991181365E-4 48-49 8.907509763125562E-5 0.0012767430660479973 0.0 0.20810417114928847 1.484584960520927E-4 50-51 8.907509763125562E-5 0.0014153043290299505 0.0 0.215447918087332 1.484584960520927E-4 52-53 8.907509763125562E-5 0.0014153043290299505 0.0 0.22100521445621535 1.583557291222322E-4 54-55 8.907509763125562E-5 0.0014202529455650203 0.0 0.2257558863298823 1.7320157872744148E-4 56-57 8.907509763125562E-5 0.0014449960282403689 0.0 0.23044717480512844 1.7815019526251123E-4 58-59 8.907509763125562E-5 0.0014598418778455783 0.0 0.23569270833230238 1.7815019526251123E-4 60-61 8.907509763125562E-5 0.0014746877274507877 0.0 0.23996336440206756 1.8804742833265076E-4 62-63 8.907509763125562E-5 0.001504379426661206 0.0 0.2441152536749911 1.9794466140279026E-4 64-65 8.907509763125562E-5 0.0016825296219237173 0.0 0.2473417516558566 1.9794466140279026E-4 66-67 8.907509763125562E-5 0.0017023240880639963 0.0 0.2503950480579946 1.9794466140279026E-4 68-69 9.897233070139513E-5 0.0017716047195549729 0.0 0.25385907963254345 1.9794466140279026E-4 70-71 9.897233070139513E-5 0.0018111936518355309 0.0 0.257021245598453 2.2268774407813906E-4 72-73 9.897233070139513E-5 0.0018210908849056705 0.0 0.2595598858809438 2.5732805982362736E-4 74-75 9.897233070139513E-5 0.0018557312006511587 0.0 0.2619946052161981 2.5732805982362736E-4 76-77 9.897233070139513E-5 0.0019448062982824143 0.0 0.26428086605540035 2.5732805982362736E-4 78-79 9.897233070139513E-5 0.001989343847098042 0.0 0.2661118541733762 2.5732805982362736E-4 80-81 9.897233070139513E-5 0.0020041896967032515 0.0 0.26687888973631196 2.5732805982362736E-4 82-83 9.897233070139513E-5 0.0020091383132383213 0.0 0.2673688027732839 2.721739094288366E-4 84-85 9.897233070139513E-5 0.0020239841628435307 0.0 0.26754695296854636 2.7712252596390636E-4 86-87 9.897233070139513E-5 0.0020685217116591585 0.0 0.2676310794496426 2.7712252596390636E-4 88 9.897233070139513E-5 0.0021180078770098557 0.0 0.2676310794496426 2.870197590340459E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7620 0.0 34.605892 1 GTATCAA 12690 0.0 31.91792 1 TCAACGC 13290 0.0 28.984833 4 ATCAACG 13345 0.0 28.833757 3 CAACGCA 13585 0.0 28.324366 5 AACGCAG 14315 0.0 26.997845 6 TATCAAC 14965 0.0 26.671007 2 ACGCAGA 17260 0.0 22.269203 7 CGCAGAG 17680 0.0 21.692457 8 GTACATG 29235 0.0 20.204584 1 TACATGG 29030 0.0 19.635107 2 ACATGGG 29250 0.0 18.867174 3 CATGGGG 21615 0.0 17.333357 4 GCAGAGT 22545 0.0 16.955286 9 AGAGTAC 19530 0.0 15.370918 10-11 GTGTAGC 5870 0.0 14.73468 1 GTACTAG 2520 0.0 14.566113 1 CAGAGTA 22250 0.0 14.184 10-11 ACCGAAC 1095 0.0 13.871248 8 GGACCGA 1320 0.0 13.424569 6 >>END_MODULE